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The map label for this gene is mmsR [H]

Identifier: 116492820

GI number: 116492820

Start: 1051556

End: 1052452

Strand: Reverse

Name: mmsR [H]

Synonym: PEPE_1057

Alternate gene names: 116492820

Gene position: 1052452-1051556 (Counterclockwise)

Preceding gene: 116492823

Following gene: 116492819

Centisome position: 57.44

GC content: 34.23

Gene sequence:

>897_bases
ATGAAAAAATTACACGGGTTTGAGAATGAATATTTATTTGTATTACCGCCAGTGATTTTGAATAATTTTAATTTTTCAAA
AGTCATAAAGCTGTTATATATAACCGATCTCGGTTTTTATCCTAAAGCAAGATATCATTTTGTTCACCGTGATCGTGGTA
CTGAAGAATGGATATTGATTTTTTGTACACATGGCAAAGGAGTTGTAAAATCTGCGACTGAGGAATGGCTAATCGAAAGT
GGATCAATTGTTTTGTTACCTCCTGGTAAGGAACATACATACTACGCTTTTGATGATGATCCTTGGGACATATTTTGGGC
GCATTTTAACGGAGATTCTGTAAATGAATATATTCCACAAGAAGCTTTGCAAGGAAACGGTTTCTTAGTGATTAATAAAA
CAAGTACTGAAGATATGCAAATGCTTATGTCACAATTTTGGCAAATGATTCAAGCGTTATCAGCAGGATTTTCATATCAA
TCAGTTTTTTACTCATCACAGGTATTAGGTGCAACTTTAGCGTATGTATCGTTGCAGTCAGTTTTGCCGCATGATTCTTA
TACAATGGGTAACGAATATATAACCAAAGCAGTTAAATATATATATGACCATTTCGAAGAAAAGGTTAGTTTGTCTACGT
TAACCGAGGTATTGGACGTGTCGAAAAGTTATCTTAGCCGAATTTTTAGACAAACGGTTGGTACTAGTGTAAACCAGTTT
ATTCTGGATATCAAAATGAAGCAAGCATGTTATTACTTAAAAGATACTAATTTGGCAGTTCATCAAATTGCCTCTCGATT
GGGCTACGATGATCCATACTATTTTTCAAGAATTTTTAAAAAGGTGGTAGGTAGTTCTCCACGGGTTTTTAGGAAGCAAG
AAAAAAATAGGTTGTAG

Upstream 100 bases:

>100_bases
TGCTAAATGATGGATTTTAGGCAACTGTTATTTGTTTAAATTTTTATCATATGATAATATCGAGACCAATTAATGAAGAG
ATTTTATAAAGGAGGAGCTT

Downstream 100 bases:

>100_bases
CCAATTATCCATGTTTATGAGTTTATATTCCATGTTTTTGATACCGCTTTCAATACATAATATGAATGTATTGAGGGCGT
TTTTTTAGAATGGAAGTGAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MKKLHGFENEYLFVLPPVILNNFNFSKVIKLLYITDLGFYPKARYHFVHRDRGTEEWILIFCTHGKGVVKSATEEWLIES
GSIVLLPPGKEHTYYAFDDDPWDIFWAHFNGDSVNEYIPQEALQGNGFLVINKTSTEDMQMLMSQFWQMIQALSAGFSYQ
SVFYSSQVLGATLAYVSLQSVLPHDSYTMGNEYITKAVKYIYDHFEEKVSLSTLTEVLDVSKSYLSRIFRQTVGTSVNQF
ILDIKMKQACYYLKDTNLAVHQIASRLGYDDPYYFSRIFKKVVGSSPRVFRKQEKNRL

Sequences:

>Translated_298_residues
MKKLHGFENEYLFVLPPVILNNFNFSKVIKLLYITDLGFYPKARYHFVHRDRGTEEWILIFCTHGKGVVKSATEEWLIES
GSIVLLPPGKEHTYYAFDDDPWDIFWAHFNGDSVNEYIPQEALQGNGFLVINKTSTEDMQMLMSQFWQMIQALSAGFSYQ
SVFYSSQVLGATLAYVSLQSVLPHDSYTMGNEYITKAVKYIYDHFEEKVSLSTLTEVLDVSKSYLSRIFRQTVGTSVNQF
ILDIKMKQACYYLKDTNLAVHQIASRLGYDDPYYFSRIFKKVVGSSPRVFRKQEKNRL
>Mature_298_residues
MKKLHGFENEYLFVLPPVILNNFNFSKVIKLLYITDLGFYPKARYHFVHRDRGTEEWILIFCTHGKGVVKSATEEWLIES
GSIVLLPPGKEHTYYAFDDDPWDIFWAHFNGDSVNEYIPQEALQGNGFLVINKTSTEDMQMLMSQFWQMIQALSAGFSYQ
SVFYSSQVLGATLAYVSLQSVLPHDSYTMGNEYITKAVKYIYDHFEEKVSLSTLTEVLDVSKSYLSRIFRQTVGTSVNQF
ILDIKMKQACYYLKDTNLAVHQIASRLGYDDPYYFSRIFKKVVGSSPRVFRKQEKNRL

Specific function: Regulatory protein for the mmsAB operon. Activates the transcription of the mmsAB genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=249, Percent_Identity=27.3092369477912, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787987, Length=262, Percent_Identity=24.4274809160305, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34583; Mature: 34583

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLHGFENEYLFVLPPVILNNFNFSKVIKLLYITDLGFYPKARYHFVHRDRGTEEWILI
CCCCCCCCCCEEEEECHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEE
FCTHGKGVVKSATEEWLIESGSIVLLPPGKEHTYYAFDDDPWDIFWAHFNGDSVNEYIPQ
EEECCCCHHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCCCEEEEEEECCCCHHHHCCH
EALQGNGFLVINKTSTEDMQMLMSQFWQMIQALSAGFSYQSVFYSSQVLGATLAYVSLQS
HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
VLPHDSYTMGNEYITKAVKYIYDHFEEKVSLSTLTEVLDVSKSYLSRIFRQTVGTSVNQF
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ILDIKMKQACYYLKDTNLAVHQIASRLGYDDPYYFSRIFKKVVGSSPRVFRKQEKNRL
HHHHHHHHHHEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure
MKKLHGFENEYLFVLPPVILNNFNFSKVIKLLYITDLGFYPKARYHFVHRDRGTEEWILI
CCCCCCCCCCEEEEECHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEE
FCTHGKGVVKSATEEWLIESGSIVLLPPGKEHTYYAFDDDPWDIFWAHFNGDSVNEYIPQ
EEECCCCHHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCCCEEEEEEECCCCHHHHCCH
EALQGNGFLVINKTSTEDMQMLMSQFWQMIQALSAGFSYQSVFYSSQVLGATLAYVSLQS
HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
VLPHDSYTMGNEYITKAVKYIYDHFEEKVSLSTLTEVLDVSKSYLSRIFRQTVGTSVNQF
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ILDIKMKQACYYLKDTNLAVHQIASRLGYDDPYYFSRIFKKVVGSSPRVFRKQEKNRL
HHHHHHHHHHEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1339433; 10984043 [H]