| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492755
Identifier: 116492755
GI number: 116492755
Start: 1001148
End: 1002914
Strand: Reverse
Name: 116492755
Synonym: PEPE_0992
Alternate gene names: NA
Gene position: 1002914-1001148 (Counterclockwise)
Preceding gene: 116492756
Following gene: 116492754
Centisome position: 54.73
GC content: 43.07
Gene sequence:
>1767_bases GTGACCTTACAACGAGATGATTTTGAATATGCTGGATTAAATAGCCGGGACGATTTACAGGTTGAGATGGGTAACGTGGT ATTGCCTAGTGCACCTGCCATGGCTGAACAGGTGACTGACATACCGGCCATGTATGGTAACCAGTTTAATGGCACGGACT TTACTAGTCGGACGATTAATATTCCGGTATCAATCTACTGTGCTGATAATCAAGACAGGTTTAATCAGGTGATGCACAAT TTAAGCGGTTTATTACTAAGTGATGACCCTAGTGATAATGGTAAAGAATATCCACTAGTATTTGGCTTTGAACCTAAGGT GACGTATTGGGGACATATTACCGCAATTAGTGATCCAGCCCCAATTAATCCGGGTATGTATGACATGACGCTTACGATTA CCTTTGTGCAGTCTGATCCCCGAGCAACCCTGCCACAAGTTGAGAAGCCTTTAAACAATGGCTTAAACACGATTACTGTT GACGGTACTGCACGAACAGCTCCAGTTGTCCAAGTTGTGCCTAAACGACCATTAAAATACATTGGTTTTAATCTTAATGG CGGTCAGTTTGGCTTAGGGCCGGAAACCCCTGACGACCAAGCTAATGCTATTCAACCCGATACTGATGTGCTCAATGATC CCATTGCTAGTATGGCGATGTGGACTAATGATGCCAATGCCATTAGTGGCATTAGAACCGATGGTAATTATAAATATCAA GGTAGCGCTCAGATTGATGAAAATAGCACATCCATGCGATTGGCCTTTGCGAATGGTTCAAAAGACTTTGGGCCGATATC AGATAATCCACCTGATGCTTGGCTAGGCCCAACTTATCGGTATACTGGGATGACTCAGTCTTTAACCAACTATCGTGTTC GTACTGGATTGCATCACATACGACACCAAGGTACTCATAATGGTCGGGCAATGGGAAAAGTACAATTTTCATTACTCGAT GCCAGTGGTAATACAATTGGCCGGTTTGTCATTGGTGACCACATGGAAGGTGGTAAGACCTATGCGACACTGCAGCTATG CAAGCCGGGAAGTAATTTTAAAGATGGCAACTACAAAACACTTTACTGGGGATATGGCCCTAGCGGTGCATTTTACAATA AAAGAGACCAAAAAGTTAATATTAAAACTGGAACAACCACTAAAACAGTGACTAAAACCAGCAGGTCTAAGCGTGGCAAG GTGACGAAGAAAACAATCAAAGAAACCGTAAATAAGTATGCTACAGTCGTTAACAAACATGAAGGCAACGCCTTAACCAA TGCTTGGGTATTTATGGACATGACGAAAGCCGGCAATGTTTATACGTGGGAATTACATCAATACAGTCCCTATACTGGCC AGCCTTATCATGATAGAAACCAGCGTTTAATTGTGAGCGGTCGCTGGGTAGATACTAACCATGAATTCGATTCAGCCTTA GGTGGATTTGGTCAAACATTCCTCAAACACCCAATCACGGAAGACAAGGAAAAAGTACCATACGTAGTTCCTTATATGGC TCTCACCGATATACAAGTCTGGCAACACAACCAGCCACAACCGAATGAACCTACTTATATTGCTAATGCAGGGGAAGAAA TTGTCATGGATTGTGAGGCTGATACCGTAACCGTCAATGGACGATTGGTATCGCCAGTATGGTCAACCGATTATCCGCAA TTAAAGCCGGGTGTTAATGGGCTAACTATGGTTGGCGACTTAGATGACGCTCAAATGACGCTTAAATACCTGCCAAAACT ATTATAG
Upstream 100 bases:
>100_bases ACTCACAAATGATGGGGTACTAATATCATAATCAACCAAAGGGTCGTCCTTAATTGGACGCCCTTTTTTACATAGTTAAA TTTAAAAAGGAGGTTAAATC
Downstream 100 bases:
>100_bases CAACATAAGGAGGTTAACCGATGGCTTTAGCCAATCAATATTTAATTCTAAATCCAAGTTTGAAACGGATTGGCACCCTT ACTATTGATGGTGCCACTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 588; Mature: 587
Protein sequence:
>588_residues MTLQRDDFEYAGLNSRDDLQVEMGNVVLPSAPAMAEQVTDIPAMYGNQFNGTDFTSRTINIPVSIYCADNQDRFNQVMHN LSGLLLSDDPSDNGKEYPLVFGFEPKVTYWGHITAISDPAPINPGMYDMTLTITFVQSDPRATLPQVEKPLNNGLNTITV DGTARTAPVVQVVPKRPLKYIGFNLNGGQFGLGPETPDDQANAIQPDTDVLNDPIASMAMWTNDANAISGIRTDGNYKYQ GSAQIDENSTSMRLAFANGSKDFGPISDNPPDAWLGPTYRYTGMTQSLTNYRVRTGLHHIRHQGTHNGRAMGKVQFSLLD ASGNTIGRFVIGDHMEGGKTYATLQLCKPGSNFKDGNYKTLYWGYGPSGAFYNKRDQKVNIKTGTTTKTVTKTSRSKRGK VTKKTIKETVNKYATVVNKHEGNALTNAWVFMDMTKAGNVYTWELHQYSPYTGQPYHDRNQRLIVSGRWVDTNHEFDSAL GGFGQTFLKHPITEDKEKVPYVVPYMALTDIQVWQHNQPQPNEPTYIANAGEEIVMDCEADTVTVNGRLVSPVWSTDYPQ LKPGVNGLTMVGDLDDAQMTLKYLPKLL
Sequences:
>Translated_588_residues MTLQRDDFEYAGLNSRDDLQVEMGNVVLPSAPAMAEQVTDIPAMYGNQFNGTDFTSRTINIPVSIYCADNQDRFNQVMHN LSGLLLSDDPSDNGKEYPLVFGFEPKVTYWGHITAISDPAPINPGMYDMTLTITFVQSDPRATLPQVEKPLNNGLNTITV DGTARTAPVVQVVPKRPLKYIGFNLNGGQFGLGPETPDDQANAIQPDTDVLNDPIASMAMWTNDANAISGIRTDGNYKYQ GSAQIDENSTSMRLAFANGSKDFGPISDNPPDAWLGPTYRYTGMTQSLTNYRVRTGLHHIRHQGTHNGRAMGKVQFSLLD ASGNTIGRFVIGDHMEGGKTYATLQLCKPGSNFKDGNYKTLYWGYGPSGAFYNKRDQKVNIKTGTTTKTVTKTSRSKRGK VTKKTIKETVNKYATVVNKHEGNALTNAWVFMDMTKAGNVYTWELHQYSPYTGQPYHDRNQRLIVSGRWVDTNHEFDSAL GGFGQTFLKHPITEDKEKVPYVVPYMALTDIQVWQHNQPQPNEPTYIANAGEEIVMDCEADTVTVNGRLVSPVWSTDYPQ LKPGVNGLTMVGDLDDAQMTLKYLPKLL >Mature_587_residues TLQRDDFEYAGLNSRDDLQVEMGNVVLPSAPAMAEQVTDIPAMYGNQFNGTDFTSRTINIPVSIYCADNQDRFNQVMHNL SGLLLSDDPSDNGKEYPLVFGFEPKVTYWGHITAISDPAPINPGMYDMTLTITFVQSDPRATLPQVEKPLNNGLNTITVD GTARTAPVVQVVPKRPLKYIGFNLNGGQFGLGPETPDDQANAIQPDTDVLNDPIASMAMWTNDANAISGIRTDGNYKYQG SAQIDENSTSMRLAFANGSKDFGPISDNPPDAWLGPTYRYTGMTQSLTNYRVRTGLHHIRHQGTHNGRAMGKVQFSLLDA SGNTIGRFVIGDHMEGGKTYATLQLCKPGSNFKDGNYKTLYWGYGPSGAFYNKRDQKVNIKTGTTTKTVTKTSRSKRGKV TKKTIKETVNKYATVVNKHEGNALTNAWVFMDMTKAGNVYTWELHQYSPYTGQPYHDRNQRLIVSGRWVDTNHEFDSALG GFGQTFLKHPITEDKEKVPYVVPYMALTDIQVWQHNQPQPNEPTYIANAGEEIVMDCEADTVTVNGRLVSPVWSTDYPQL KPGVNGLTMVGDLDDAQMTLKYLPKLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65207; Mature: 65076
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLQRDDFEYAGLNSRDDLQVEMGNVVLPSAPAMAEQVTDIPAMYGNQFNGTDFTSRTIN CCCCCCCCCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHCHHHHCCCCCCCCCCCEEEE IPVSIYCADNQDRFNQVMHNLSGLLLSDDPSDNGKEYPLVFGFEPKVTYWGHITAISDPA EEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEECCCCEEEEEEEEEECCCC PINPGMYDMTLTITFVQSDPRATLPQVEKPLNNGLNTITVDGTARTAPVVQVVPKRPLKY CCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCEEE IGFNLNGGQFGLGPETPDDQANAIQPDTDVLNDPIASMAMWTNDANAISGIRTDGNYKYQ EEEECCCCEECCCCCCCCCCCCCCCCCHHHHCCCHHHHEEECCCCCHHCCEEECCCEEEE GSAQIDENSTSMRLAFANGSKDFGPISDNPPDAWLGPTYRYTGMTQSLTNYRVRTGLHHI CCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHH RHQGTHNGRAMGKVQFSLLDASGNTIGRFVIGDHMEGGKTYATLQLCKPGSNFKDGNYKT HHCCCCCCCEEEEEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCEEE LYWGYGPSGAFYNKRDQKVNIKTGTTTKTVTKTSRSKRGKVTKKTIKETVNKYATVVNKH EEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHCCC EGNALTNAWVFMDMTKAGNVYTWELHQYSPYTGQPYHDRNQRLIVSGRWVDTNHEFDSAL CCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHH GGFGQTFLKHPITEDKEKVPYVVPYMALTDIQVWQHNQPQPNEPTYIANAGEEIVMDCEA HHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEECCCCEEEEECCC DTVTVNGRLVSPVWSTDYPQLKPGVNGLTMVGDLDDAQMTLKYLPKLL CEEEECCEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCC >Mature Secondary Structure TLQRDDFEYAGLNSRDDLQVEMGNVVLPSAPAMAEQVTDIPAMYGNQFNGTDFTSRTIN CCCCCCCCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHCHHHHCCCCCCCCCCCEEEE IPVSIYCADNQDRFNQVMHNLSGLLLSDDPSDNGKEYPLVFGFEPKVTYWGHITAISDPA EEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEECCCCEEEEEEEEEECCCC PINPGMYDMTLTITFVQSDPRATLPQVEKPLNNGLNTITVDGTARTAPVVQVVPKRPLKY CCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCEEE IGFNLNGGQFGLGPETPDDQANAIQPDTDVLNDPIASMAMWTNDANAISGIRTDGNYKYQ EEEECCCCEECCCCCCCCCCCCCCCCCHHHHCCCHHHHEEECCCCCHHCCEEECCCEEEE GSAQIDENSTSMRLAFANGSKDFGPISDNPPDAWLGPTYRYTGMTQSLTNYRVRTGLHHI CCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHH RHQGTHNGRAMGKVQFSLLDASGNTIGRFVIGDHMEGGKTYATLQLCKPGSNFKDGNYKT HHCCCCCCCEEEEEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCEEE LYWGYGPSGAFYNKRDQKVNIKTGTTTKTVTKTSRSKRGKVTKKTIKETVNKYATVVNKH EEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHCCC EGNALTNAWVFMDMTKAGNVYTWELHQYSPYTGQPYHDRNQRLIVSGRWVDTNHEFDSAL CCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHH GGFGQTFLKHPITEDKEKVPYVVPYMALTDIQVWQHNQPQPNEPTYIANAGEEIVMDCEA HHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEECCCCEEEEECCC DTVTVNGRLVSPVWSTDYPQLKPGVNGLTMVGDLDDAQMTLKYLPKLL CEEEECCEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA