| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492742
Identifier: 116492742
GI number: 116492742
Start: 988402
End: 989460
Strand: Reverse
Name: 116492742
Synonym: PEPE_0979
Alternate gene names: NA
Gene position: 989460-988402 (Counterclockwise)
Preceding gene: 116492743
Following gene: 116492741
Centisome position: 54.0
GC content: 33.71
Gene sequence:
>1059_bases ATGCGCCATCTTAGTATAAATAATCAGTACATTAAAAGTAGATTACTTAGTATTATTCTAATTTATATAATGACGTTGTT GCTAATACTTATTTTTCCAAATTCAATTAATGCGAGTGGAAAAGTAAATAATCAAGTAACGTTTAATGCTGAAGCAATTT TACCGAAAAATCAGCATTCCGAAGTTAGTTACTACGACTTACGGGTACGTCCAGGAGCTACGCAAAAGTTATTTATTCGA CTTCGTAACTTAACCAATGCAAAGCAAACCATTATGGTTAAAACTAATAATGCGATAACTAATCAGAATGGAGCTATTGA TTATTCTAAATCAAACGCCCCATTACTAGGCGGTCCCACTTTTAAACAGCTTATTTCAGGACCACAAACGGTCTTACTTA AGCCTAAGGAAGTTCGAAGAGTTAGCTTTCAGTTGAAGATTCCACCAAAAGGTTTTAAAGGAACGGTTTTAGGAGGATTT TATTGTTACACAAAACCAGTTAAGGCTGCCACTAGTACATCAGGTTTAAGTTTGACCAATAATTTTGCTTATACCATTGG CGCAAAGTTAGAGTGTACAAGCTCCAAAATACAACCTAAGTTAAGTTTGATAAAGGCTACACCAGGATTAGATAACGGCT ATTTATCAATTTTTGCTACTTTACAAAATGCAGCTCCTGTATTGTTGAGTAAATTAGACATGCGGGCCACCGTAACCCAG AAAAATCACCATGAAATTTTAAAAAGAACACATAAGAAAATCTCGATTGCACCTCGAACACGTTTTCGACTGCCCATTAG TTGGAATGATGAACCCTTAAAAAATGGAAGATATGTGTTAACCATCGCTTTAAGTAGTTCTACGGGTAAGAAATGGCAAC TTAGTCGGGAATTTAAAATTACAGGAGACGATGCCAAATTAAATCAAAAGGCCGTTGAACTTAAAAAAACAGATAATAAA TTGTTTTATTTAATAATAGGACTTTTGATTGGAATAATTGTAATTTTGAGCGGTTATATTTATTACGTGAAACAGAAAAA TAATAAAACGGAGAAGTAA
Upstream 100 bases:
>100_bases GAAGGTAAAAATGGTAATAACGAAAATGTTAAACTCCATGTACCACGTGCAGGAGTTGAAGCGCAAAGTTATTCAGCCGA GTTAACATGGGTATTGACCG
Downstream 100 bases:
>100_bases GATGAAATTTAGGGGAGGAATAATATTATTTACATTAATACTTAACATTAATGGAATTGCGTTAGCTAACGAACCTACTA ATAGTAAAATCGGGATTACT
Product: cell surface protein
Products: NA
Alternate protein names: C-Terminal Membrane Anchored Cell Surface Protein; Secreted Protein
Number of amino acids: Translated: 352; Mature: 352
Protein sequence:
>352_residues MRHLSINNQYIKSRLLSIILIYIMTLLLILIFPNSINASGKVNNQVTFNAEAILPKNQHSEVSYYDLRVRPGATQKLFIR LRNLTNAKQTIMVKTNNAITNQNGAIDYSKSNAPLLGGPTFKQLISGPQTVLLKPKEVRRVSFQLKIPPKGFKGTVLGGF YCYTKPVKAATSTSGLSLTNNFAYTIGAKLECTSSKIQPKLSLIKATPGLDNGYLSIFATLQNAAPVLLSKLDMRATVTQ KNHHEILKRTHKKISIAPRTRFRLPISWNDEPLKNGRYVLTIALSSSTGKKWQLSREFKITGDDAKLNQKAVELKKTDNK LFYLIIGLLIGIIVILSGYIYYVKQKNNKTEK
Sequences:
>Translated_352_residues MRHLSINNQYIKSRLLSIILIYIMTLLLILIFPNSINASGKVNNQVTFNAEAILPKNQHSEVSYYDLRVRPGATQKLFIR LRNLTNAKQTIMVKTNNAITNQNGAIDYSKSNAPLLGGPTFKQLISGPQTVLLKPKEVRRVSFQLKIPPKGFKGTVLGGF YCYTKPVKAATSTSGLSLTNNFAYTIGAKLECTSSKIQPKLSLIKATPGLDNGYLSIFATLQNAAPVLLSKLDMRATVTQ KNHHEILKRTHKKISIAPRTRFRLPISWNDEPLKNGRYVLTIALSSSTGKKWQLSREFKITGDDAKLNQKAVELKKTDNK LFYLIIGLLIGIIVILSGYIYYVKQKNNKTEK >Mature_352_residues MRHLSINNQYIKSRLLSIILIYIMTLLLILIFPNSINASGKVNNQVTFNAEAILPKNQHSEVSYYDLRVRPGATQKLFIR LRNLTNAKQTIMVKTNNAITNQNGAIDYSKSNAPLLGGPTFKQLISGPQTVLLKPKEVRRVSFQLKIPPKGFKGTVLGGF YCYTKPVKAATSTSGLSLTNNFAYTIGAKLECTSSKIQPKLSLIKATPGLDNGYLSIFATLQNAAPVLLSKLDMRATVTQ KNHHEILKRTHKKISIAPRTRFRLPISWNDEPLKNGRYVLTIALSSSTGKKWQLSREFKITGDDAKLNQKAVELKKTDNK LFYLIIGLLIGIIVILSGYIYYVKQKNNKTEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39396; Mature: 39396
Theoretical pI: Translated: 10.86; Mature: 10.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHLSINNQYIKSRLLSIILIYIMTLLLILIFPNSINASGKVNNQVTFNAEAILPKNQHS CCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCC EVSYYDLRVRPGATQKLFIRLRNLTNAKQTIMVKTNNAITNQNGAIDYSKSNAPLLGGPT CEEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEECCEEECCCCCEEECCCCCCEECCCH FKQLISGPQTVLLKPKEVRRVSFQLKIPPKGFKGTVLGGFYCYTKPVKAATSTSGLSLTN HHHHHCCCCEEEECCHHHEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEC NFAYTIGAKLECTSSKIQPKLSLIKATPGLDNGYLSIFATLQNAAPVLLSKLDMRATVTQ CEEEEECCEEEECCCCCCCEEEEEEECCCCCCCCEEEEEEHHCCHHHHHHHHCCEEEECC KNHHEILKRTHKKISIAPRTRFRLPISWNDEPLKNGRYVLTIALSSSTGKKWQLSREFKI CHHHHHHHHHHHEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEE TGDDAKLNQKAVELKKTDNKLFYLIIGLLIGIIVILSGYIYYVKQKNNKTEK ECCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCC >Mature Secondary Structure MRHLSINNQYIKSRLLSIILIYIMTLLLILIFPNSINASGKVNNQVTFNAEAILPKNQHS CCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCC EVSYYDLRVRPGATQKLFIRLRNLTNAKQTIMVKTNNAITNQNGAIDYSKSNAPLLGGPT CEEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEECCEEECCCCCEEECCCCCCEECCCH FKQLISGPQTVLLKPKEVRRVSFQLKIPPKGFKGTVLGGFYCYTKPVKAATSTSGLSLTN HHHHHCCCCEEEECCHHHEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEC NFAYTIGAKLECTSSKIQPKLSLIKATPGLDNGYLSIFATLQNAAPVLLSKLDMRATVTQ CEEEEECCEEEECCCCCCCEEEEEEECCCCCCCCEEEEEEHHCCHHHHHHHHCCEEEECC KNHHEILKRTHKKISIAPRTRFRLPISWNDEPLKNGRYVLTIALSSSTGKKWQLSREFKI CHHHHHHHHHHHEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEE TGDDAKLNQKAVELKKTDNKLFYLIIGLLIGIIVILSGYIYYVKQKNNKTEK ECCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA