| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492683
Identifier: 116492683
GI number: 116492683
Start: 917706
End: 919139
Strand: Reverse
Name: 116492683
Synonym: PEPE_0918
Alternate gene names: NA
Gene position: 919139-917706 (Counterclockwise)
Preceding gene: 116492686
Following gene: 116492680
Centisome position: 50.16
GC content: 34.94
Gene sequence:
>1434_bases ATGCAAATTAATAAGAAACGTAAACTAGCATGGAGACTAGGAATAGCTTGCTTAATATTAGGTATTCTAATAATTCAACA ACTCTATTATCAATCGACACATTTTTGGACAAATACCACGATTGATAATATCAATATTAGCCACCTCAATTATCAAGAGG CAGTTAAAAAAATTGAGAACCAACGGGTGACGCCAAGTTATACTATTAACGATCCCCAAAACAAGAAGGTGTTAGCTAGT AAAAAGTTTAATAACATTCCAGTTACCGATTATGAAACGCAATTGAAGTATCGACTAACTGAACAAAGGAATCGACTATG GTGGTCGATTAACCATAGTACCAAAGAATTTAAAGCTTTAACTTTATATAAAAAAAGCGCCCTGCTTTCTGCTATAAAAA CAGATCAACCGTCTTTACAAAAACATTTAGAAGCAATTAATGCTTCACGGACCATGCCACAAAATGGAAAAGTAATGATC CAAGATGGAAAAGTTTCTTTATTGTCCGCTCACTCTGGTAATCAGATATCGGTAAATCAGACCGTGGAAAAAGTTAGTGA TAAACTTTTAAATACACCTAATAAACACGTTGAAATCACTGCCCCATTACTTTCTGAAACATGGAGTGGAAAAACCACGG CTAAAAAAATCAGATTACTATTAAAAAAGCAGTTTACGTTTCGAGCTAAAGGACACCAAATTACTGGTCAAGTAAGTGAT TTAATAGAAAATGGAACGATTAGTAAAGATGGTCCATCAATCGACTTAAAGCCCGCCTATAAATTCATTAAGCGTTTTAA CCATAAATACACGCTTTCTGGAGCACAAAATTTAACCTTTACAACAGTCCAAGGCAAACAGGTATCTTTTAGTAACGCTG AGGGCACTCTAGGTTGGAGTTTAAATACGGATAGTGAAGCACAACATCTTATCCAAAGTTTACTGGCAGGAAAAAATAAT GTTTCAGCTAAAAACTTCAATCAGGCTAATCAAACGCTAAATCAAAAAAATTGGCATAAAAAAATAGCTAATTCCGATCA TATCGAAATAGATTTAACGCATGAACGACTATATTTAGTACAAAATCAAACAGTGGCGCAAAAAATTCGGATTAACACTG GATCTCCCAAAATTAATATTGCTACCCCAACAGGCGCTTATTTCATTAAATTCAAAATTGCGCCTATAACTATGCGAGGT TATGAAAAAAATGGAGAACCTTATAAATCTTACGTGCCACAAGCAGACAATTTAACCGATGACGGGATATTTATTCATTC CGCTCCATGGGTACAAGCCTCTGTATTTGGTAATCCTAGTCAGCGTTACAATCATGGCTCTAACGGTTGTATCAACGTTC CACCTAAGGATATGGTGAAACTATATCAAAAAACAACCGTAGATGAACCAGTAATTATCTATGGACAAGGTTAA
Upstream 100 bases:
>100_bases TTTAAAAATTTATCAAGGATTTCGTAATAACTGCTTCACAAAAATGTAACATTGATGTAATATTTATGAAATAAAAGTGA AATAGAAAGAAGCCAATAAA
Downstream 100 bases:
>100_bases TCCGTTTGGAATCTATCTCCAATTAAACATATAAAAAATAAAAGAAGGACATCCCTAAAGGACGTCCTTCTTTTATTTTT TATTTAATTTTTAGTTCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: ErfK Family Protein; Secreted Protein; ErfK/YbiS/YcfS/YnhG Superfamily Protein; Ykud Domain-Containing Protein; Extracellular Protein
Number of amino acids: Translated: 477; Mature: 477
Protein sequence:
>477_residues MQINKKRKLAWRLGIACLILGILIIQQLYYQSTHFWTNTTIDNINISHLNYQEAVKKIENQRVTPSYTINDPQNKKVLAS KKFNNIPVTDYETQLKYRLTEQRNRLWWSINHSTKEFKALTLYKKSALLSAIKTDQPSLQKHLEAINASRTMPQNGKVMI QDGKVSLLSAHSGNQISVNQTVEKVSDKLLNTPNKHVEITAPLLSETWSGKTTAKKIRLLLKKQFTFRAKGHQITGQVSD LIENGTISKDGPSIDLKPAYKFIKRFNHKYTLSGAQNLTFTTVQGKQVSFSNAEGTLGWSLNTDSEAQHLIQSLLAGKNN VSAKNFNQANQTLNQKNWHKKIANSDHIEIDLTHERLYLVQNQTVAQKIRINTGSPKINIATPTGAYFIKFKIAPITMRG YEKNGEPYKSYVPQADNLTDDGIFIHSAPWVQASVFGNPSQRYNHGSNGCINVPPKDMVKLYQKTTVDEPVIIYGQG
Sequences:
>Translated_477_residues MQINKKRKLAWRLGIACLILGILIIQQLYYQSTHFWTNTTIDNINISHLNYQEAVKKIENQRVTPSYTINDPQNKKVLAS KKFNNIPVTDYETQLKYRLTEQRNRLWWSINHSTKEFKALTLYKKSALLSAIKTDQPSLQKHLEAINASRTMPQNGKVMI QDGKVSLLSAHSGNQISVNQTVEKVSDKLLNTPNKHVEITAPLLSETWSGKTTAKKIRLLLKKQFTFRAKGHQITGQVSD LIENGTISKDGPSIDLKPAYKFIKRFNHKYTLSGAQNLTFTTVQGKQVSFSNAEGTLGWSLNTDSEAQHLIQSLLAGKNN VSAKNFNQANQTLNQKNWHKKIANSDHIEIDLTHERLYLVQNQTVAQKIRINTGSPKINIATPTGAYFIKFKIAPITMRG YEKNGEPYKSYVPQADNLTDDGIFIHSAPWVQASVFGNPSQRYNHGSNGCINVPPKDMVKLYQKTTVDEPVIIYGQG >Mature_477_residues MQINKKRKLAWRLGIACLILGILIIQQLYYQSTHFWTNTTIDNINISHLNYQEAVKKIENQRVTPSYTINDPQNKKVLAS KKFNNIPVTDYETQLKYRLTEQRNRLWWSINHSTKEFKALTLYKKSALLSAIKTDQPSLQKHLEAINASRTMPQNGKVMI QDGKVSLLSAHSGNQISVNQTVEKVSDKLLNTPNKHVEITAPLLSETWSGKTTAKKIRLLLKKQFTFRAKGHQITGQVSD LIENGTISKDGPSIDLKPAYKFIKRFNHKYTLSGAQNLTFTTVQGKQVSFSNAEGTLGWSLNTDSEAQHLIQSLLAGKNN VSAKNFNQANQTLNQKNWHKKIANSDHIEIDLTHERLYLVQNQTVAQKIRINTGSPKINIATPTGAYFIKFKIAPITMRG YEKNGEPYKSYVPQADNLTDDGIFIHSAPWVQASVFGNPSQRYNHGSNGCINVPPKDMVKLYQKTTVDEPVIIYGQG
Specific function: Unknown
COG id: COG1376
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53918; Mature: 53918
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQINKKRKLAWRLGIACLILGILIIQQLYYQSTHFWTNTTIDNINISHLNYQEAVKKIEN CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEECCEEEEECCHHHHHHHHHC QRVTPSYTINDPQNKKVLASKKFNNIPVTDYETQLKYRLTEQRNRLWWSINHSTKEFKAL CCCCCCEEECCCCCCEEEEECCCCCCCCCCCHHHHHEEEHHCCCCEEEEECCCCCHHHEE TLYKKSALLSAIKTDQPSLQKHLEAINASRTMPQNGKVMIQDGKVSLLSAHSGNQISVNQ HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCEEEHHH TVEKVSDKLLNTPNKHVEITAPLLSETWSGKTTAKKIRLLLKKQFTFRAKGHQITGQVSD HHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHEEEECCCEECCHHHH LIENGTISKDGPSIDLKPAYKFIKRFNHKYTLSGAQNLTFTTVQGKQVSFSNAEGTLGWS HHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEECCCEEEECCCCCEEEEE LNTDSEAQHLIQSLLAGKNNVSAKNFNQANQTLNQKNWHKKIANSDHIEIDLTHERLYLV CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEE QNQTVAQKIRINTGSPKINIATPTGAYFIKFKIAPITMRGYEKNGEPYKSYVPQADNLTD ECCCEEEEEEEECCCCEEEEECCCCEEEEEEEEEEEEEECCCCCCCHHHHHCCCCCCCCC DGIFIHSAPWVQASVFGNPSQRYNHGSNGCINVPPKDMVKLYQKTTVDEPVIIYGQG CCEEEECCCCEEEEECCCCHHHCCCCCCCEEECCHHHHHHHHHHCCCCCCEEEEECC >Mature Secondary Structure MQINKKRKLAWRLGIACLILGILIIQQLYYQSTHFWTNTTIDNINISHLNYQEAVKKIEN CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEECCEEEEECCHHHHHHHHHC QRVTPSYTINDPQNKKVLASKKFNNIPVTDYETQLKYRLTEQRNRLWWSINHSTKEFKAL CCCCCCEEECCCCCCEEEEECCCCCCCCCCCHHHHHEEEHHCCCCEEEEECCCCCHHHEE TLYKKSALLSAIKTDQPSLQKHLEAINASRTMPQNGKVMIQDGKVSLLSAHSGNQISVNQ HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCEEEHHH TVEKVSDKLLNTPNKHVEITAPLLSETWSGKTTAKKIRLLLKKQFTFRAKGHQITGQVSD HHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHEEEECCCEECCHHHH LIENGTISKDGPSIDLKPAYKFIKRFNHKYTLSGAQNLTFTTVQGKQVSFSNAEGTLGWS HHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEECCCEEEECCCCCEEEEE LNTDSEAQHLIQSLLAGKNNVSAKNFNQANQTLNQKNWHKKIANSDHIEIDLTHERLYLV CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEE QNQTVAQKIRINTGSPKINIATPTGAYFIKFKIAPITMRGYEKNGEPYKSYVPQADNLTD ECCCEEEEEEEECCCCEEEEECCCCEEEEEEEEEEEEEECCCCCCCHHHHHCCCCCCCCC DGIFIHSAPWVQASVFGNPSQRYNHGSNGCINVPPKDMVKLYQKTTVDEPVIIYGQG CCEEEECCCCEEEEECCCCHHHCCCCCCCEEECCHHHHHHHHHHCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA