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The map label for this gene is ytqB [H]

Identifier: 116492413

GI number: 116492413

Start: 684323

End: 684886

Strand: Reverse

Name: ytqB [H]

Synonym: PEPE_0643

Alternate gene names: 116492413

Gene position: 684886-684323 (Counterclockwise)

Preceding gene: 116492414

Following gene: 116492410

Centisome position: 37.38

GC content: 37.59

Gene sequence:

>564_bases
ATGCTTGATAATGCCATGCAATACAGTCATCAATTACTAACTGAAATTGTTCAACCCGGCGATGTGGTAATCGATGCCAC
TATGGGAAATGGTCATGACACTTTATTTTTAAGTGAATTGGTTCAAAGCACTGGCCGAGTTTTTAGTTTTGATGTTCAAA
AAGCAGCTTTAGAGCAAACTCGAGCTCTGTTTGAGCACCAGCATCAAACCTTAATTAATGTTGAACTAATCCATGCTAGT
CATGATCAAATTGACCATTATGTCACCGAACCCATTACTGGGGCCATCTTTAATCTAGGATATTTACCGGGCGGAGATAA
ATCAATTATTACTCATCCCACTTCCACTATCTCGGCAGTCCAACAAAGTTTAAATCAGTTAAAAATTGGTGGTCGTATTA
TCCTAGTTTGTTACTACGGTCATCCTGGAGGTCAAGAAGAATTACAACAATTACTTTCATTTGTAGCTGAACTCGACCAA
CATCACTATTCGTGTTTACGCTATGAATTCATCAACCAGATTAATAATCCGCCCATTTTATTGTGTATTGAGCGTAAAAA
ATAA

Upstream 100 bases:

>100_bases
TTAAACGTTCATTTTCCAACGGATGTTACGGCGGGATTCTTACTTGGTTTAATCGTTCTTCAATTTACAACCTATCTCTT
TTATGGAAGGAAAATTAAAA

Downstream 100 bases:

>100_bases
TGGATTTAGAAGGCTAGCCTCTCAGCTAGGTTCTAAATCCATTTTTTTAAATATTATCTTTTGAGCGACGGTCAAACGCA
TTAATGATTAAAGCAACCAC

Product: SAM-dependent methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MLDNAMQYSHQLLTEIVQPGDVVIDATMGNGHDTLFLSELVQSTGRVFSFDVQKAALEQTRALFEHQHQTLINVELIHAS
HDQIDHYVTEPITGAIFNLGYLPGGDKSIITHPTSTISAVQQSLNQLKIGGRIILVCYYGHPGGQEELQQLLSFVAELDQ
HHYSCLRYEFINQINNPPILLCIERKK

Sequences:

>Translated_187_residues
MLDNAMQYSHQLLTEIVQPGDVVIDATMGNGHDTLFLSELVQSTGRVFSFDVQKAALEQTRALFEHQHQTLINVELIHAS
HDQIDHYVTEPITGAIFNLGYLPGGDKSIITHPTSTISAVQQSLNQLKIGGRIILVCYYGHPGGQEELQQLLSFVAELDQ
HHYSCLRYEFINQINNPPILLCIERKK
>Mature_187_residues
MLDNAMQYSHQLLTEIVQPGDVVIDATMGNGHDTLFLSELVQSTGRVFSFDVQKAALEQTRALFEHQHQTLINVELIHAS
HDQIDHYVTEPITGAIFNLGYLPGGDKSIITHPTSTISAVQQSLNQLKIGGRIILVCYYGHPGGQEELQQLLSFVAELDQ
HHYSCLRYEFINQINNPPILLCIERKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010719 [H]

Pfam domain/function: PF06962 rRNA_methylase [H]

EC number: NA

Molecular weight: Translated: 21006; Mature: 21006

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDNAMQYSHQLLTEIVQPGDVVIDATMGNGHDTLFLSELVQSTGRVFSFDVQKAALEQT
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHH
RALFEHQHQTLINVELIHASHDQIDHYVTEPITGAIFNLGYLPGGDKSIITHPTSTISAV
HHHHHHHHHHEEEEEEEECCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEECCCHHHHHH
QQSLNQLKIGGRIILVCYYGHPGGQEELQQLLSFVAELDQHHYSCLRYEFINQINNPPIL
HHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LCIERKK
EEEECCC
>Mature Secondary Structure
MLDNAMQYSHQLLTEIVQPGDVVIDATMGNGHDTLFLSELVQSTGRVFSFDVQKAALEQT
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHH
RALFEHQHQTLINVELIHASHDQIDHYVTEPITGAIFNLGYLPGGDKSIITHPTSTISAV
HHHHHHHHHHEEEEEEEECCHHHHHHHHHCCHHHHHHHCCCCCCCCCCEEECCCHHHHHH
QQSLNQLKIGGRIILVCYYGHPGGQEELQQLLSFVAELDQHHYSCLRYEFINQINNPPIL
HHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
LCIERKK
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]