| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is nrdD [H]
Identifier: 116492285
GI number: 116492285
Start: 537223
End: 539394
Strand: Direct
Name: nrdD [H]
Synonym: PEPE_0484
Alternate gene names: 116492285
Gene position: 537223-539394 (Clockwise)
Preceding gene: 116492284
Following gene: 116492286
Centisome position: 29.32
GC content: 39.83
Gene sequence:
>2172_bases ATGGATAGTATTAAAACAGTACTAAGTGACAAAATTGAAAATTTGAAAAAAATGAAGGTGACAAAAGTTGATGGGGAAGT CGTTAACTTTTACCCTTATAAAATTGCTTTAGTAGTAGAAACATTAACCTCTGATGCGGCGCTCCAGACCAGCTTAAAAG AACAAATTTTTAATCGTATTGTTGATGATTGGGACAATAACATCAGCACAGCCGATATTAGACAAGTTTTTCAAGAAATT TTGCGGTTAAATAAGCAAGCTAAACTATTAGAACGGTACGAAGCTTATCGTGAAAAAGATATTAAAAAATGGAAGACCGC CATTGATCCACAATACAAACTTAATCAGCTTTTTAACGGAAATGACATGGTGGTTCATGAAAACGCCAACAAAGATAGTA ATGTTTTTAGTACCAGAAGAGATTTGACTGCCGGAATGGTGGGTAAATCAGTGGGATTAACCATGATGCCTGAAATTGTA GCTAAGGCTCATTTAAGAGGAGATATCCATTTCCATGATTTAGATTATTCTCCACTAACTTCGATGACCAACTGTTGTCT AATTGATTTTAAGGGGATGCTGGAAAAGGGCTTTAAGATTGGAAATGCAGATGTGGAACCTCCTAAGTCAATCCAAACGG CGACTGCTCAAATGTCACAGATTATTGCTAATGTGGCTTCTAGTCAATATGGTGGTTGTTCGGCCGATCGAGCAGATGAA TTGCTTGCTCCATACGCTAAATTAAACTATGAAAAACATTTAAAAGAAGCTGAAGAATGGGTTGAAGAAGGTCGCCGGGA CGAATTTGCTAAAACAAAAACGGCTAAGGATATTTATGATGCAATGCAAGCTCTAGAATACGAGGTTAATACTTTGTTTT CATCTAATGGGCAAACACCTTTTACTACGGTTGGATTCGGATTGGGAACTTCCTGGTTTGAACGAGAAATCCAAAAAGCA ATCCTCAAGGTTCGGATTAAAGGTTTGGGTAAGCAGCATCGTACCGCGATTTTTCCTAAACTGGTCTTTTCAATTAAACG TGGGTTAAATCTCAATGCTGGTGATCCTAACTATGACATTAAGCAACTTGCGGTTGAATGTGCCACTAAGAGAATGTATC CTGATGTCTTGATGTACGACAAGATTGTCGAATTGACGGGGAACTTTAAAGCTCCAATGGGCTGCCGTAGTTTCTTACAA GCATGGAAAGATGCAAACGGAAATGAAGTTAATAATGGTCGGATGAATTTAGGCGTAGTAACCATTAATTTGCCGCGCAT TGCGCTAGAAGCTAAAGGCGATCGCCAAGTATTTTGGGAAATCATGGAAGACCGCGTTGAAACCGCTCGACGCGCACTAT TATTCCGAATTAAACGTTGTCGTCAGGCACAGCCGCAGAATGCACCCATTCTTTATAAAAATGGTGCATTTGGCAAACGT CTCCAAGACGAAGACGAGGTCGATGAATTATTTAACAAGAATCGAGCAACGATATCGTTGGGCTACATTGGGTTATACGA AGTCGGCACGGCTTTCTTTGGCGCCGATTGGGAACAAAATCCGGAAGCTCATGATTTTACCGTAAAAATTGTTAAGTACT TGCATGATTACTGCCTCCAATGGGAAAACGAATATGGATATCATTTTAGCGTTTATTCCACACCAGCTGAATCACTAACG GATCGTTTTTGTGAAGACGATATTGAAAAGTTTGGTAAGGTAAAAGACATTACTGACAAAGAATATTACACCAACAGTTT CCACTATGATGTGCGTAAAAATCCTACACCATTTGAAAAATTAAGTTTTGAGGAAGCCTATCCTAAGTACGCTTCGGGTG GATTTATTCATTACTGTGAGTATCCCAATTTAAAACAAAATCCGGCTGCGCTAGAAGCGGTCTGGACTTGGGCTTATGAC CATGTCGGTTATTTAGGGACTAATGCTTCAATCGATCATTGCTACAAATGTGGTTATGATGGCGATTTTAAACCCACTGC CCGGGGCTTCGAATGTGCACAGTGTGGTAACCGCGATCCTAAGACTTGTGATGTAGTCAAAAGAACCTGTGGATATTTGG GTAATCCAATGATTCGTCCGATGGTCCATGGTCGTCATCAAGAAATTGCATCACGGGTTAAACATATGGGTCAAGGTGAA GCCAATGAATAA
Upstream 100 bases:
>100_bases CGTTGGTTAGTGACGGTTTTGTGCATGGTAGTGATGGGGTTCGGTTTATACATGGTTGGACCTATTATGGGGATTTGGTA GAAAGGGGATTGAATTTTAG
Downstream 100 bases:
>100_bases ATCACGACCAGTACGCTTACCTAAAAATCCGGAACCACAAGCCTGGTTGGCAGCTGATCGTAGTCTCCAATACATTGCCG ACTATAAACCTTTTAACATG
Product: anaerobic ribonucleoside triphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 723; Mature: 723
Protein sequence:
>723_residues MDSIKTVLSDKIENLKKMKVTKVDGEVVNFYPYKIALVVETLTSDAALQTSLKEQIFNRIVDDWDNNISTADIRQVFQEI LRLNKQAKLLERYEAYREKDIKKWKTAIDPQYKLNQLFNGNDMVVHENANKDSNVFSTRRDLTAGMVGKSVGLTMMPEIV AKAHLRGDIHFHDLDYSPLTSMTNCCLIDFKGMLEKGFKIGNADVEPPKSIQTATAQMSQIIANVASSQYGGCSADRADE LLAPYAKLNYEKHLKEAEEWVEEGRRDEFAKTKTAKDIYDAMQALEYEVNTLFSSNGQTPFTTVGFGLGTSWFEREIQKA ILKVRIKGLGKQHRTAIFPKLVFSIKRGLNLNAGDPNYDIKQLAVECATKRMYPDVLMYDKIVELTGNFKAPMGCRSFLQ AWKDANGNEVNNGRMNLGVVTINLPRIALEAKGDRQVFWEIMEDRVETARRALLFRIKRCRQAQPQNAPILYKNGAFGKR LQDEDEVDELFNKNRATISLGYIGLYEVGTAFFGADWEQNPEAHDFTVKIVKYLHDYCLQWENEYGYHFSVYSTPAESLT DRFCEDDIEKFGKVKDITDKEYYTNSFHYDVRKNPTPFEKLSFEEAYPKYASGGFIHYCEYPNLKQNPAALEAVWTWAYD HVGYLGTNASIDHCYKCGYDGDFKPTARGFECAQCGNRDPKTCDVVKRTCGYLGNPMIRPMVHGRHQEIASRVKHMGQGE ANE
Sequences:
>Translated_723_residues MDSIKTVLSDKIENLKKMKVTKVDGEVVNFYPYKIALVVETLTSDAALQTSLKEQIFNRIVDDWDNNISTADIRQVFQEI LRLNKQAKLLERYEAYREKDIKKWKTAIDPQYKLNQLFNGNDMVVHENANKDSNVFSTRRDLTAGMVGKSVGLTMMPEIV AKAHLRGDIHFHDLDYSPLTSMTNCCLIDFKGMLEKGFKIGNADVEPPKSIQTATAQMSQIIANVASSQYGGCSADRADE LLAPYAKLNYEKHLKEAEEWVEEGRRDEFAKTKTAKDIYDAMQALEYEVNTLFSSNGQTPFTTVGFGLGTSWFEREIQKA ILKVRIKGLGKQHRTAIFPKLVFSIKRGLNLNAGDPNYDIKQLAVECATKRMYPDVLMYDKIVELTGNFKAPMGCRSFLQ AWKDANGNEVNNGRMNLGVVTINLPRIALEAKGDRQVFWEIMEDRVETARRALLFRIKRCRQAQPQNAPILYKNGAFGKR LQDEDEVDELFNKNRATISLGYIGLYEVGTAFFGADWEQNPEAHDFTVKIVKYLHDYCLQWENEYGYHFSVYSTPAESLT DRFCEDDIEKFGKVKDITDKEYYTNSFHYDVRKNPTPFEKLSFEEAYPKYASGGFIHYCEYPNLKQNPAALEAVWTWAYD HVGYLGTNASIDHCYKCGYDGDFKPTARGFECAQCGNRDPKTCDVVKRTCGYLGNPMIRPMVHGRHQEIASRVKHMGQGE ANE >Mature_723_residues MDSIKTVLSDKIENLKKMKVTKVDGEVVNFYPYKIALVVETLTSDAALQTSLKEQIFNRIVDDWDNNISTADIRQVFQEI LRLNKQAKLLERYEAYREKDIKKWKTAIDPQYKLNQLFNGNDMVVHENANKDSNVFSTRRDLTAGMVGKSVGLTMMPEIV AKAHLRGDIHFHDLDYSPLTSMTNCCLIDFKGMLEKGFKIGNADVEPPKSIQTATAQMSQIIANVASSQYGGCSADRADE LLAPYAKLNYEKHLKEAEEWVEEGRRDEFAKTKTAKDIYDAMQALEYEVNTLFSSNGQTPFTTVGFGLGTSWFEREIQKA ILKVRIKGLGKQHRTAIFPKLVFSIKRGLNLNAGDPNYDIKQLAVECATKRMYPDVLMYDKIVELTGNFKAPMGCRSFLQ AWKDANGNEVNNGRMNLGVVTINLPRIALEAKGDRQVFWEIMEDRVETARRALLFRIKRCRQAQPQNAPILYKNGAFGKR LQDEDEVDELFNKNRATISLGYIGLYEVGTAFFGADWEQNPEAHDFTVKIVKYLHDYCLQWENEYGYHFSVYSTPAESLT DRFCEDDIEKFGKVKDITDKEYYTNSFHYDVRKNPTPFEKLSFEEAYPKYASGGFIHYCEYPNLKQNPAALEAVWTWAYD HVGYLGTNASIDHCYKCGYDGDFKPTARGFECAQCGNRDPKTCDVVKRTCGYLGNPMIRPMVHGRHQEIASRVKHMGQGE ANE
Specific function: Unknown
COG id: COG1328
COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glycine radical domain [H]
Homologues:
Organism=Escherichia coli, GI1790686, Length=686, Percent_Identity=51.1661807580175, Blast_Score=707, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR012833 [H]
Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 82520; Mature: 82520
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSIKTVLSDKIENLKKMKVTKVDGEVVNFYPYKIALVVETLTSDAALQTSLKEQIFNRI CCHHHHHHHHHHHHHHHHEEEECCCCEEEEECEEEEEEHHHHHCHHHHHHHHHHHHHHHH VDDWDNNISTADIRQVFQEILRLNKQAKLLERYEAYREKDIKKWKTAIDPQYKLNQLFNG HHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC NDMVVHENANKDSNVFSTRRDLTAGMVGKSVGLTMMPEIVAKAHLRGDIHFHDLDYSPLT CCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCHHH SMTNCCLIDFKGMLEKGFKIGNADVEPPKSIQTATAQMSQIIANVASSQYGGCSADRADE HHHHEEEEECHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH LLAPYAKLNYEKHLKEAEEWVEEGRRDEFAKTKTAKDIYDAMQALEYEVNTLFSSNGQTP HHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC FTTVGFGLGTSWFEREIQKAILKVRIKGLGKQHRTAIFPKLVFSIKRGLNLNAGDPNYDI CEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHH KQLAVECATKRMYPDVLMYDKIVELTGNFKAPMGCRSFLQAWKDANGNEVNNGRMNLGVV HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEE TINLPRIALEAKGDRQVFWEIMEDRVETARRALLFRIKRCRQAQPQNAPILYKNGAFGKR EEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC LQDEDEVDELFNKNRATISLGYIGLYEVGTAFFGADWEQNPEAHDFTVKIVKYLHDYCLQ CCCHHHHHHHHCCCCCEEEECCEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH WENEYGYHFSVYSTPAESLTDRFCEDDIEKFGKVKDITDKEYYTNSFHYDVRKNPTPFEK CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEECCCCCCCHHH LSFEEAYPKYASGGFIHYCEYPNLKQNPAALEAVWTWAYDHVGYLGTNASIDHCYKCGYD CCHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCC GDFKPTARGFECAQCGNRDPKTCDVVKRTCGYLGNPMIRPMVHGRHQEIASRVKHMGQGE CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHCCCCC ANE CCC >Mature Secondary Structure MDSIKTVLSDKIENLKKMKVTKVDGEVVNFYPYKIALVVETLTSDAALQTSLKEQIFNRI CCHHHHHHHHHHHHHHHHEEEECCCCEEEEECEEEEEEHHHHHCHHHHHHHHHHHHHHHH VDDWDNNISTADIRQVFQEILRLNKQAKLLERYEAYREKDIKKWKTAIDPQYKLNQLFNG HHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC NDMVVHENANKDSNVFSTRRDLTAGMVGKSVGLTMMPEIVAKAHLRGDIHFHDLDYSPLT CCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCHHH SMTNCCLIDFKGMLEKGFKIGNADVEPPKSIQTATAQMSQIIANVASSQYGGCSADRADE HHHHEEEEECHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH LLAPYAKLNYEKHLKEAEEWVEEGRRDEFAKTKTAKDIYDAMQALEYEVNTLFSSNGQTP HHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC FTTVGFGLGTSWFEREIQKAILKVRIKGLGKQHRTAIFPKLVFSIKRGLNLNAGDPNYDI CEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHH KQLAVECATKRMYPDVLMYDKIVELTGNFKAPMGCRSFLQAWKDANGNEVNNGRMNLGVV HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEE TINLPRIALEAKGDRQVFWEIMEDRVETARRALLFRIKRCRQAQPQNAPILYKNGAFGKR EEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC LQDEDEVDELFNKNRATISLGYIGLYEVGTAFFGADWEQNPEAHDFTVKIVKYLHDYCLQ CCCHHHHHHHHCCCCCEEEECCEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH WENEYGYHFSVYSTPAESLTDRFCEDDIEKFGKVKDITDKEYYTNSFHYDVRKNPTPFEK CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEECCCCCCCHHH LSFEEAYPKYASGGFIHYCEYPNLKQNPAALEAVWTWAYDHVGYLGTNASIDHCYKCGYD CCHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCC GDFKPTARGFECAQCGNRDPKTCDVVKRTCGYLGNPMIRPMVHGRHQEIASRVKHMGQGE CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHCCCCC ANE CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]