| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is acmA [H]
Identifier: 116492256
GI number: 116492256
Start: 505640
End: 508219
Strand: Direct
Name: acmA [H]
Synonym: PEPE_0453
Alternate gene names: 116492256
Gene position: 505640-508219 (Clockwise)
Preceding gene: 116492255
Following gene: 116492257
Centisome position: 27.59
GC content: 37.6
Gene sequence:
>2580_bases ATGAATTCTAAATTACATTACAAAATGTTTAAAGCGGGTAAAAAGTGGGCCTTTGCAAGTATCGCAGCTGCCAGTTTAGG GATCATTGCTTTAGATGCTAATGCAACTAATGTTCGTGCCGATAGCACCGACAATGATGCTACTGATACGGTTGATGATA GTACGACTACTTCACCCGTAAGCGAAGCGAGTGTTACATTAACGAAGACTTCTTTACCAGCTAGTTCAGCAACTAGTGCT AGTGTGACTAGCTCAGCAACTTCAGCAGTTACAAGTACTGCTACTTCCAGCGCTGTAAGTAAATCTGCAACTAATTCGGT GGTGACTTCGAGTTCTGCTAAGAGCGCGATAAGTTCATCTGCTACGTCAACTGCAAGCTCTAGTGCAAAGAAATCAGTTG CTAGTTCAGCGGCTTCATCTGCTAGTGAAAAAACCGTTTCAAGCACTGCTAAGAGCGTTGCTAATAGCTCAAGTGTAGTT AAAAATACAAGTTCTAGTTCTACTAAAAACTCAAGTGCAGCTGTTTCAGTAGTTGCGCATTCAAATTCGAGCGCCGCTTC TTCGACAGCTAGCTCCAAAGCTGCTATTAAAACGAGCTCAGCTACTAGTGTAAGTTCAAGTGCGGTCTCTAAAACAAGTA GTGCTGCTACTACTTCTAAAAATAAAGCGGTAGATAAGAAATCAACTTCAAAGGACTATACGATTGATTATACGCATCAA TTAAGTGATGACGAGGGTAGTGATCAGCAAACTAAAAATAACGTAATCATTGCACACGCCACTGGAGTTTATGCACCAGC TGAAAATGTAGCTATTTTTGAAAAACGTGAATGGGACAGTAGCGAAAGCTATGTTCAATATATCGTTGGTGATGGTGGAA AAGTTTATGCAGTTGGACAAGAAGGATACGTCGCTTGGGGCGCAGGCGAATGGGCTAATGAAAATGCTCCTGTTCAAGTT GAGTTAGCACAAACATATTCTGATAGCCAATTTAAAAAAGATTATCAAACTTACGTTAACCTACTAAGGGATTCTGCTAA GAAATGGAATATTCCAACCAGTCTAGATAGTAATGAATATCGTGGTATTAAATCTCATGTATGGATTACTAATCATGTTT GGGGAAACCATGTAGACCCTTATGGATATCTTTCGACCCATGGTATTTCACAAACTCAATTTGCCCATGATCTTCAATAT GGATTTGGTAGCAGTAGTGATTCAAGTAATAATACATCTAATGATAGCAACAAAAATAATGCTAACAACAGTAATAAAAA TGATTCAAATAGTAATAAAAATAATTCAAGCAAGATAAATGTTGGCGATAAAGTAACCATCAAGACAAGTGCTAAGCATT GGGCAACTGGACAAACAATCTATAGTGCCGTTAAGGGCAAGACTTACAAGGTTATCCAAGTTAACGGTAGTCGCTTACTG CTTGAAAAAGTTTTAAGTTGGATTAATACTTCAGATGTTACTACTGCTAGTTCTTCAAATCATTCAAATTCAAACAAAAA TAATGGTAACAAGAATGATAGCAACAAAAATAACAGCGACAAAAATAATAGTACTGCCAACATTAAAGTAGGTTCCAAAG TAACTATCAAGTCGAGTGCTAAACATTGGGCAACTGGGCAAACAATCTACAATGCCGTTAAGGGTAAGACTTATAAAGTT ATCCAAGTTAATGGAAACCGTTTATTGTTAGATAAGGTTATCAGTTGGATTAACAAGGGTGACGTTACGGTGCCAGGGTC TTCATCATCAAATCAATCCAGTTCTAACAAAGGTAACAGTAGTAATAGTAATAAAAATAACAGCAGCAATAAGATTGGTG TAGGTTCCAAAGTAACCATCAATAAGAATGCTAAGCATTGGGCAACGGGTCAATCTATTTACAATCCAGTTAAGGGCAAG ACTTACAAAGTTATCCAGGTTAACGGTAGTAAATTGCTTTTAGACAAAGTTATTAGTTGGATTAATAAGGCGGATGTAAC ATTAGCTGGCTCAAAATCCAATTCAGGTTCATCAAACAAGAATAACGCGGCTTCCATGCATAATGTGAATGTTCATTTAA CTAACAAACATTGGACAACTGCACAAACTAATTTTGTAAATGGTATTGCAGCAGATATTGTTAACGTATGTAATAGTAAT AAGCTCTATGCTTCCGTAGCTATGGCTCAAGCAGTTTTGGAAAGCGGGTATGGAACTTCATCACTTGCTCAAGAAGCGCA CAATTTATTTGGGATTAAGGCTGATAGCACTTGGAAAGGTGCTACCTATACTAAGAGTACTAAAGAGGTTATCAATGGTC GCACAGTTACCATCAATGCCTCATTTAGAAAATATGCTTCTATCAAGGATTCGATTGCAGATTACGCTAAGAAACTTGAA TCACGTGCACAATACGCTAATGCATTTGCACCAAAATCAGCTAACTATGTGGCTTCTATTAAAGCTATCAAGGCTGGTGG TTACGCAACTTCAACCACTTATGTTGGTAGTATAATTAACTGCATCAATAGTAATGGTTTCTTTAAATTAGACGGATTAA GCAAAGCCCTTCATCTTTAA
Upstream 100 bases:
>100_bases GTAATTGTAATGTAAAAGATTGGAACAAATTATTATGCTAATATTGACTACGATAGATGAATGTCAACTAGGTAAACAAA CTAAAGGGGAATACGAGTTT
Downstream 100 bases:
>100_bases GATTTAATTAGGTTAAAATAGGAGACTGGAACATACAATCTGTGTTACAGTCTTTTTATTATATGGGGAAAGGATGAATG GAAGATGAAATATTCAGAGT
Product: N-acetylmuramidase
Products: NA
Alternate protein names: Autolysin; Lysozyme; Peptidoglycan hydrolase [H]
Number of amino acids: Translated: 859; Mature: 859
Protein sequence:
>859_residues MNSKLHYKMFKAGKKWAFASIAAASLGIIALDANATNVRADSTDNDATDTVDDSTTTSPVSEASVTLTKTSLPASSATSA SVTSSATSAVTSTATSSAVSKSATNSVVTSSSAKSAISSSATSTASSSAKKSVASSAASSASEKTVSSTAKSVANSSSVV KNTSSSSTKNSSAAVSVVAHSNSSAASSTASSKAAIKTSSATSVSSSAVSKTSSAATTSKNKAVDKKSTSKDYTIDYTHQ LSDDEGSDQQTKNNVIIAHATGVYAPAENVAIFEKREWDSSESYVQYIVGDGGKVYAVGQEGYVAWGAGEWANENAPVQV ELAQTYSDSQFKKDYQTYVNLLRDSAKKWNIPTSLDSNEYRGIKSHVWITNHVWGNHVDPYGYLSTHGISQTQFAHDLQY GFGSSSDSSNNTSNDSNKNNANNSNKNDSNSNKNNSSKINVGDKVTIKTSAKHWATGQTIYSAVKGKTYKVIQVNGSRLL LEKVLSWINTSDVTTASSSNHSNSNKNNGNKNDSNKNNSDKNNSTANIKVGSKVTIKSSAKHWATGQTIYNAVKGKTYKV IQVNGNRLLLDKVISWINKGDVTVPGSSSSNQSSSNKGNSSNSNKNNSSNKIGVGSKVTINKNAKHWATGQSIYNPVKGK TYKVIQVNGSKLLLDKVISWINKADVTLAGSKSNSGSSNKNNAASMHNVNVHLTNKHWTTAQTNFVNGIAADIVNVCNSN KLYASVAMAQAVLESGYGTSSLAQEAHNLFGIKADSTWKGATYTKSTKEVINGRTVTINASFRKYASIKDSIADYAKKLE SRAQYANAFAPKSANYVASIKAIKAGGYATSTTYVGSIINCINSNGFFKLDGLSKALHL
Sequences:
>Translated_859_residues MNSKLHYKMFKAGKKWAFASIAAASLGIIALDANATNVRADSTDNDATDTVDDSTTTSPVSEASVTLTKTSLPASSATSA SVTSSATSAVTSTATSSAVSKSATNSVVTSSSAKSAISSSATSTASSSAKKSVASSAASSASEKTVSSTAKSVANSSSVV KNTSSSSTKNSSAAVSVVAHSNSSAASSTASSKAAIKTSSATSVSSSAVSKTSSAATTSKNKAVDKKSTSKDYTIDYTHQ LSDDEGSDQQTKNNVIIAHATGVYAPAENVAIFEKREWDSSESYVQYIVGDGGKVYAVGQEGYVAWGAGEWANENAPVQV ELAQTYSDSQFKKDYQTYVNLLRDSAKKWNIPTSLDSNEYRGIKSHVWITNHVWGNHVDPYGYLSTHGISQTQFAHDLQY GFGSSSDSSNNTSNDSNKNNANNSNKNDSNSNKNNSSKINVGDKVTIKTSAKHWATGQTIYSAVKGKTYKVIQVNGSRLL LEKVLSWINTSDVTTASSSNHSNSNKNNGNKNDSNKNNSDKNNSTANIKVGSKVTIKSSAKHWATGQTIYNAVKGKTYKV IQVNGNRLLLDKVISWINKGDVTVPGSSSSNQSSSNKGNSSNSNKNNSSNKIGVGSKVTINKNAKHWATGQSIYNPVKGK TYKVIQVNGSKLLLDKVISWINKADVTLAGSKSNSGSSNKNNAASMHNVNVHLTNKHWTTAQTNFVNGIAADIVNVCNSN KLYASVAMAQAVLESGYGTSSLAQEAHNLFGIKADSTWKGATYTKSTKEVINGRTVTINASFRKYASIKDSIADYAKKLE SRAQYANAFAPKSANYVASIKAIKAGGYATSTTYVGSIINCINSNGFFKLDGLSKALHL >Mature_859_residues MNSKLHYKMFKAGKKWAFASIAAASLGIIALDANATNVRADSTDNDATDTVDDSTTTSPVSEASVTLTKTSLPASSATSA SVTSSATSAVTSTATSSAVSKSATNSVVTSSSAKSAISSSATSTASSSAKKSVASSAASSASEKTVSSTAKSVANSSSVV KNTSSSSTKNSSAAVSVVAHSNSSAASSTASSKAAIKTSSATSVSSSAVSKTSSAATTSKNKAVDKKSTSKDYTIDYTHQ LSDDEGSDQQTKNNVIIAHATGVYAPAENVAIFEKREWDSSESYVQYIVGDGGKVYAVGQEGYVAWGAGEWANENAPVQV ELAQTYSDSQFKKDYQTYVNLLRDSAKKWNIPTSLDSNEYRGIKSHVWITNHVWGNHVDPYGYLSTHGISQTQFAHDLQY GFGSSSDSSNNTSNDSNKNNANNSNKNDSNSNKNNSSKINVGDKVTIKTSAKHWATGQTIYSAVKGKTYKVIQVNGSRLL LEKVLSWINTSDVTTASSSNHSNSNKNNGNKNDSNKNNSDKNNSTANIKVGSKVTIKSSAKHWATGQTIYNAVKGKTYKV IQVNGNRLLLDKVISWINKGDVTVPGSSSSNQSSSNKGNSSNSNKNNSSNKIGVGSKVTINKNAKHWATGQSIYNPVKGK TYKVIQVNGSKLLLDKVISWINKADVTLAGSKSNSGSSNKNNAASMHNVNVHLTNKHWTTAQTNFVNGIAADIVNVCNSN KLYASVAMAQAVLESGYGTSSLAQEAHNLFGIKADSTWKGATYTKSTKEVINGRTVTINASFRKYASIKDSIADYAKKLE SRAQYANAFAPKSANYVASIKAIKAGGYATSTTYVGSIINCINSNGFFKLDGLSKALHL
Specific function: Hydrolyzes the cell wall of L.lactis and M.lysodeikticus. Required for cell separation during growth [H]
COG id: COG1705
COG function: function code NU; Muramidase (flagellum-specific)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 3 LysM repeats [H]
Homologues:
Organism=Escherichia coli, GI1787321, Length=122, Percent_Identity=35.2459016393443, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013338 - InterPro: IPR002901 - InterPro: IPR018392 - InterPro: IPR002482 [H]
Pfam domain/function: PF01832 Glucosaminidase; PF01476 LysM [H]
EC number: =3.2.1.17 [H]
Molecular weight: Translated: 90453; Mature: 90453
Theoretical pI: Translated: 10.23; Mature: 10.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSKLHYKMFKAGKKWAFASIAAASLGIIALDANATNVRADSTDNDATDTVDDSTTTSPV CCCCEEEHHHHCCCCCHHHHHHHHHCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCC SEASVTLTKTSLPASSATSASVTSSATSAVTSTATSSAVSKSATNSVVTSSSAKSAISSS CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCHHHHHHHHC ATSTASSSAKKSVASSAASSASEKTVSSTAKSVANSSSVVKNTSSSSTKNSSAAVSVVAH CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEEEEEEE SNSSAASSTASSKAAIKTSSATSVSSSAVSKTSSAATTSKNKAVDKKSTSKDYTIDYTHQ CCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCEEEEEEEE LSDDEGSDQQTKNNVIIAHATGVYAPAENVAIFEKREWDSSESYVQYIVGDGGKVYAVGQ CCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEECC EGYVAWGAGEWANENAPVQVELAQTYSDSQFKKDYQTYVNLLRDSAKKWNIPTSLDSNEY CCEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC RGIKSHVWITNHVWGNHVDPYGYLSTHGISQTQFAHDLQYGFGSSSDSSNNTSNDSNKNN CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC ANNSNKNDSNSNKNNSSKINVGDKVTIKTSAKHWATGQTIYSAVKGKTYKVIQVNGSRLL CCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCHHHHHHHHCCCEEEEEEECCCHHH LEKVLSWINTSDVTTASSSNHSNSNKNNGNKNDSNKNNSDKNNSTANIKVGSKVTIKSSA HHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCC KHWATGQTIYNAVKGKTYKVIQVNGNRLLLDKVISWINKGDVTVPGSSSSNQSSSNKGNS CCCCCCHHHHHHHCCCEEEEEEECCCEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCCCC SNSNKNNSSNKIGVGSKVTINKNAKHWATGQSIYNPVKGKTYKVIQVNGSKLLLDKVISW CCCCCCCCCCEECCCCEEEECCCCCCCCCCHHHHCCCCCCEEEEEEECCCEEHHHHHHHH INKADVTLAGSKSNSGSSNKNNAASMHNVNVHLTNKHWTTAQTNFVNGIAADIVNVCNSN HCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC KLYASVAMAQAVLESGYGTSSLAQEAHNLFGIKADSTWKGATYTKSTKEVINGRTVTINA CHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEECCCCCCCCEECCCHHHHHCCEEEEEEC SFRKYASIKDSIADYAKKLESRAQYANAFAPKSANYVASIKAIKAGGYATSTTYVGSIIN CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHH CINSNGFFKLDGLSKALHL HHCCCCCEEECCHHHHHCC >Mature Secondary Structure MNSKLHYKMFKAGKKWAFASIAAASLGIIALDANATNVRADSTDNDATDTVDDSTTTSPV CCCCEEEHHHHCCCCCHHHHHHHHHCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCC SEASVTLTKTSLPASSATSASVTSSATSAVTSTATSSAVSKSATNSVVTSSSAKSAISSS CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCHHHHHHHHC ATSTASSSAKKSVASSAASSASEKTVSSTAKSVANSSSVVKNTSSSSTKNSSAAVSVVAH CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEEEEEEE SNSSAASSTASSKAAIKTSSATSVSSSAVSKTSSAATTSKNKAVDKKSTSKDYTIDYTHQ CCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCEEEEEEEE LSDDEGSDQQTKNNVIIAHATGVYAPAENVAIFEKREWDSSESYVQYIVGDGGKVYAVGQ CCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEECC EGYVAWGAGEWANENAPVQVELAQTYSDSQFKKDYQTYVNLLRDSAKKWNIPTSLDSNEY CCEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC RGIKSHVWITNHVWGNHVDPYGYLSTHGISQTQFAHDLQYGFGSSSDSSNNTSNDSNKNN CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC ANNSNKNDSNSNKNNSSKINVGDKVTIKTSAKHWATGQTIYSAVKGKTYKVIQVNGSRLL CCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCCHHHHHHHHCCCEEEEEEECCCHHH LEKVLSWINTSDVTTASSSNHSNSNKNNGNKNDSNKNNSDKNNSTANIKVGSKVTIKSSA HHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCC KHWATGQTIYNAVKGKTYKVIQVNGNRLLLDKVISWINKGDVTVPGSSSSNQSSSNKGNS CCCCCCHHHHHHHCCCEEEEEEECCCEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCCCC SNSNKNNSSNKIGVGSKVTINKNAKHWATGQSIYNPVKGKTYKVIQVNGSKLLLDKVISW CCCCCCCCCCEECCCCEEEECCCCCCCCCCHHHHCCCCCCEEEEEEECCCEEHHHHHHHH INKADVTLAGSKSNSGSSNKNNAASMHNVNVHLTNKHWTTAQTNFVNGIAADIVNVCNSN HCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC KLYASVAMAQAVLESGYGTSSLAQEAHNLFGIKADSTWKGATYTKSTKEVINGRTVTINA CHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEECCCCCCCCEECCCHHHHHCCEEEEEEC SFRKYASIKDSIADYAKKLESRAQYANAFAPKSANYVASIKAIKAGGYATSTTYVGSIIN CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHH CINSNGFFKLDGLSKALHL HHCCCCCEEECCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11131071 [H]