| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492172
Identifier: 116492172
GI number: 116492172
Start: 416032
End: 417138
Strand: Direct
Name: 116492172
Synonym: PEPE_0369
Alternate gene names: NA
Gene position: 416032-417138 (Clockwise)
Preceding gene: 116492171
Following gene: 116492173
Centisome position: 22.7
GC content: 37.22
Gene sequence:
>1107_bases ATGTATTGGAATAAAAAAGTAATCTTGGTACTAAGTATTGTGCTAATGGGGCTTGCAGCGGTCTTCTTTGTTAAAAATGA TGCTTTTTTATATCAAACACCGGTTGGACGTATTGAAAGTGTTAAAAAAATTAGTAAAACTGTCCAAATTGATAATTTTA AAAATCAAGATTACAGTGTCCGACAACAGCTTAAAGTGAAAATTTTAAATGGTAAAGAGCGTAATCGAATTATCACGGTT AATAATGAATATACTAAGTCGCAGGCGACGGATTTAAAATACCGTAAAGGCCAAACGGTCTTATTACATTTAACCCGACA CCACCATCAGATTAAGACAGCTACAATTACAGATTTGAAACGCGACGTGCCTTTGACCATCTTAATTGTGATGGTAATCG GCTTATTAATAATGATGAAGTCGACCGGATTAAGGGCGCTCTTAAGCTTGATTTTAAACACCATTTTATTTTTCATTGCA GTGGAAATCGATGTTCAGCAAGAGGGCTCAGGAGTTTTTTGGATTTTTAGCGGAATCGCGGCCGTTTTTTGTGCGGTAAC GTTAGTATTAGTTTTAGGTTGGAACAAAAAAATGTGGGTAAGCTTTACAACGACGATGTTAGGAACTTTCATCGCAGTCG CTATTAGTTTATTAGTCTTTAGACTTACCAATAATGGGGGACTTCATTTTGAAACGATGGAGTACGTAACACAAAATCCC GAACCTTTATTTCTAGCTGAAACAGTACTAGGCTCATTGGGAGCGGTAATGGATGAATCAACTGACATTATTGTTAGTCT TGCCAAGTTACGAAAAGAAAATCCGCTAATTTCAATGAAACAGCTCTGGATTTCTGGCCGAAATATCGGGAAAACAATTA TGGGTCCTCTCCTTAACGTTTTATTCATGATATTTATGGCAGATACATTTTCAATGATGGCTCTATATCTTAGAAATGGA AACGGTTGGGGCTACTCGTTTGAAATGAACATGCAACTGGGATTTGTACAAAGCTTAATTAGTGGAATTGGGATTGTATT AACCGTTCCTATTGCTAGCTGGCTGGTTGGCATTTTCTTTAAGAAGGGGGCGGTGCAACATGCATAG
Upstream 100 bases:
>100_bases AGAGTGCGGAACCATTTTACTTTGCGATGAATTACGAGCGCGTTAGTGGTCCAGAAATGGAAGCGGGCATTGTACATTAT TGGATGGAAAAGGCGATTTA
Downstream 100 bases:
>100_bases CGCAACTTTAATATTGATGCTAATTTTAGCCCTGTTAATGATTATTGTGGGCGGTGCAACGGGAGTCCGGGCCTTTTTAA GTATTATCTTCAATTTTGCC
Product: multitransmembrane protein
Products: NA
Alternate protein names: Multitransmembrane Protein; Integral Membrane Protein; Lipoprotein; YibE/F Superfamily Transporter; YibE/F-Like Protein
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MYWNKKVILVLSIVLMGLAAVFFVKNDAFLYQTPVGRIESVKKISKTVQIDNFKNQDYSVRQQLKVKILNGKERNRIITV NNEYTKSQATDLKYRKGQTVLLHLTRHHHQIKTATITDLKRDVPLTILIVMVIGLLIMMKSTGLRALLSLILNTILFFIA VEIDVQQEGSGVFWIFSGIAAVFCAVTLVLVLGWNKKMWVSFTTTMLGTFIAVAISLLVFRLTNNGGLHFETMEYVTQNP EPLFLAETVLGSLGAVMDESTDIIVSLAKLRKENPLISMKQLWISGRNIGKTIMGPLLNVLFMIFMADTFSMMALYLRNG NGWGYSFEMNMQLGFVQSLISGIGIVLTVPIASWLVGIFFKKGAVQHA
Sequences:
>Translated_368_residues MYWNKKVILVLSIVLMGLAAVFFVKNDAFLYQTPVGRIESVKKISKTVQIDNFKNQDYSVRQQLKVKILNGKERNRIITV NNEYTKSQATDLKYRKGQTVLLHLTRHHHQIKTATITDLKRDVPLTILIVMVIGLLIMMKSTGLRALLSLILNTILFFIA VEIDVQQEGSGVFWIFSGIAAVFCAVTLVLVLGWNKKMWVSFTTTMLGTFIAVAISLLVFRLTNNGGLHFETMEYVTQNP EPLFLAETVLGSLGAVMDESTDIIVSLAKLRKENPLISMKQLWISGRNIGKTIMGPLLNVLFMIFMADTFSMMALYLRNG NGWGYSFEMNMQLGFVQSLISGIGIVLTVPIASWLVGIFFKKGAVQHA >Mature_368_residues MYWNKKVILVLSIVLMGLAAVFFVKNDAFLYQTPVGRIESVKKISKTVQIDNFKNQDYSVRQQLKVKILNGKERNRIITV NNEYTKSQATDLKYRKGQTVLLHLTRHHHQIKTATITDLKRDVPLTILIVMVIGLLIMMKSTGLRALLSLILNTILFFIA VEIDVQQEGSGVFWIFSGIAAVFCAVTLVLVLGWNKKMWVSFTTTMLGTFIAVAISLLVFRLTNNGGLHFETMEYVTQNP EPLFLAETVLGSLGAVMDESTDIIVSLAKLRKENPLISMKQLWISGRNIGKTIMGPLLNVLFMIFMADTFSMMALYLRNG NGWGYSFEMNMQLGFVQSLISGIGIVLTVPIASWLVGIFFKKGAVQHA
Specific function: Unknown
COG id: COG5438
COG function: function code S; Predicted multitransmembrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41293; Mature: 41293
Theoretical pI: Translated: 10.39; Mature: 10.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYWNKKVILVLSIVLMGLAAVFFVKNDAFLYQTPVGRIESVKKISKTVQIDNFKNQDYSV CCCCHHHHHHHHHHHHHHHHHHHEECCCEEEECCCHHHHHHHHHHHHEEECCCCCCCHHH RQQLKVKILNGKERNRIITVNNEYTKSQATDLKYRKGQTVLLHLTRHHHQIKTATITDLK HHHEEEEEECCCCCCEEEEECCCCCCCHHCCCHHCCCCEEEEEEEHHHHHHHHHHHHHHH RDVPLTILIVMVIGLLIMMKSTGLRALLSLILNTILFFIAVEIDVQQEGSGVFWIFSGIA CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEHHHHHH AVFCAVTLVLVLGWNKKMWVSFTTTMLGTFIAVAISLLVFRLTNNGGLHFETMEYVTQNP HHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHEECCCCEEEEHHHHHHCCC EPLFLAETVLGSLGAVMDESTDIIVSLAKLRKENPLISMKQLWISGRNIGKTIMGPLLNV CCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHH LFMIFMADTFSMMALYLRNGNGWGYSFEMNMQLGFVQSLISGIGIVLTVPIASWLVGIFF HHHHHHHHHHHHHHHHEECCCCCEEEEEECCHHHHHHHHHCCCHHEEHHHHHHHHHHHHH KKGAVQHA HCCCCCCC >Mature Secondary Structure MYWNKKVILVLSIVLMGLAAVFFVKNDAFLYQTPVGRIESVKKISKTVQIDNFKNQDYSV CCCCHHHHHHHHHHHHHHHHHHHEECCCEEEECCCHHHHHHHHHHHHEEECCCCCCCHHH RQQLKVKILNGKERNRIITVNNEYTKSQATDLKYRKGQTVLLHLTRHHHQIKTATITDLK HHHEEEEEECCCCCCEEEEECCCCCCCHHCCCHHCCCCEEEEEEEHHHHHHHHHHHHHHH RDVPLTILIVMVIGLLIMMKSTGLRALLSLILNTILFFIAVEIDVQQEGSGVFWIFSGIA CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEHHHHHH AVFCAVTLVLVLGWNKKMWVSFTTTMLGTFIAVAISLLVFRLTNNGGLHFETMEYVTQNP HHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHEECCCCEEEEHHHHHHCCC EPLFLAETVLGSLGAVMDESTDIIVSLAKLRKENPLISMKQLWISGRNIGKTIMGPLLNV CCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHH LFMIFMADTFSMMALYLRNGNGWGYSFEMNMQLGFVQSLISGIGIVLTVPIASWLVGIFF HHHHHHHHHHHHHHHHEECCCCCEEEEEECCHHHHHHHHHCCCHHEEHHHHHHHHHHHHH KKGAVQHA HCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA