| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492124
Identifier: 116492124
GI number: 116492124
Start: 368650
End: 370200
Strand: Direct
Name: 116492124
Synonym: PEPE_0321
Alternate gene names: NA
Gene position: 368650-370200 (Clockwise)
Preceding gene: 116492123
Following gene: 116492125
Centisome position: 20.12
GC content: 36.23
Gene sequence:
>1551_bases ATGCGTAAAATAATTATGTTTTTTTTAACGATTTTCTTCATGGCCCTTGGCGGAGTAGTTCAAGCCACCCGAACAGCACA TGGTAGTGAACGCGATGATAATCGTGTTTTGCTCGTTTATGATTCTCAAAATACTGTCGAACAGGGTGAAAAAAAGATTG ATACCTTACAGCGAATGTTAGCAGGGATGGGACTTAAAGTTAAGACAGTTAAAGAAAGTGAATATCAAAAAGGTGAGTTA AACCATAGTTATCAAGGGGTAATTACCATGATTAACTGGAAACAAGCGTCACTGGATAATCCAACTTTCGTTAAAGATCG TAATCAATATGACGGTGTTAAACTTCATATTGGTGAAGGCTTAGATCGAACCGAACAAAAACAGTTACAGGTTAAGCTAA AGACGATTTATCAACAACAATTCATTTTAAGTGACGATAGCAGTACAGAAATGTTGCCATTTGTGGAACGCATGGATGTT TTAACTGGAGTTCCAAAACAAGCACAGAGTTACGGCATGTTAAAGACGCAAAATAATGAAGGTCAATCCTATAAGTATGG GGTAATTAATCAAAAACAAGGTTACTTGCCTTTCTTCAACAATAAAGGACTGGGATTAATTACAGCTAGCAAGATGATAG CTATTTTATTTAATCGTCAAGAAGAAACCAAACCGTTGTTAACGATTACGGATGTTTCGCCTTATAGTAATCTAAAGCTG TTAGATCAATTAAGCGTATTCTGTGAAAAGCATGGTATACCATTGGCAATCAGTACTTCCACAGTAGCTAAAAACACGGA AATGCACGCGTATAAAAGGTTTACCATGTATTTACGTAGACTTGAAGATCGAGGCGGTGTGATTTTCTTACAAGCTCCGG TGATTGGGGGAGCTACTGCGGATAACGCAGGAGAATTGAGTGAATTATTTGATAACTATCTACTTAATTTGGCACAAAAT CAAGTTTATCCAGTTGGAATTAGTGCCCAAGGTTTTTGGAATCAGGATCGAGTCTTGAGGAATAGTGCTTTGAAAAAAGC TAATTATCAGATGCTACTTCCTAATAAAAAAGTAGTTTATCTCGATCAAGATAATCAAGGTGGTACCAATAGCCGAAGTT ATTTAGCATTACTAGCCTCAAGTTTTAATAAAATTAAACACCAAGCAGATGTACGATTTGCAATGCCCACAGCGCTAACT TTTAAGATGCCTGATAGTAAGGTTAAGTTGAAAAATTTAAAAGAACAAATTCAAGCGTTGAACTTTGAATGGCAAGCTCC GGATGAAGCTATTAATTCAAAAATTGATTTTGCAAGTTCATCACTTGCTTTTCAAAATGGACAGTATTTGGTGAATGGTA AGGAGACGGAAGTTGAAGTTAATTCAAATATGGAAAATACTGATAAGCCAACTCCTACGCCGGCGCTATTTAAAGGCTTT TTCAGAGTTGAAGGGCAAATTATTACCGTGTTCTTCGCCATTATCTTTACCGTCTTAATCATTTTTATCGCCTTTGGAAG AAAAATTTACAAGAATATGTTCAAGAGATAG
Upstream 100 bases:
>100_bases TTATTCATGGTCCCTCTCAGTTTGGACTTTACCTTCATAATGTTTATTTCAGACATTCTAAATCATCAATTATGGCTAAC TGAACAGGAGGAAGATGGGG
Downstream 100 bases:
>100_bases GAGGAGTGAATCATCACAATTTTGGATTTTTTCCTAATGGTAGCTATCATTGCCATTTGGGGAACATTAATAATTAATTT GATTTTAACGGTAGCTGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 516; Mature: 516
Protein sequence:
>516_residues MRKIIMFFLTIFFMALGGVVQATRTAHGSERDDNRVLLVYDSQNTVEQGEKKIDTLQRMLAGMGLKVKTVKESEYQKGEL NHSYQGVITMINWKQASLDNPTFVKDRNQYDGVKLHIGEGLDRTEQKQLQVKLKTIYQQQFILSDDSSTEMLPFVERMDV LTGVPKQAQSYGMLKTQNNEGQSYKYGVINQKQGYLPFFNNKGLGLITASKMIAILFNRQEETKPLLTITDVSPYSNLKL LDQLSVFCEKHGIPLAISTSTVAKNTEMHAYKRFTMYLRRLEDRGGVIFLQAPVIGGATADNAGELSELFDNYLLNLAQN QVYPVGISAQGFWNQDRVLRNSALKKANYQMLLPNKKVVYLDQDNQGGTNSRSYLALLASSFNKIKHQADVRFAMPTALT FKMPDSKVKLKNLKEQIQALNFEWQAPDEAINSKIDFASSSLAFQNGQYLVNGKETEVEVNSNMENTDKPTPTPALFKGF FRVEGQIITVFFAIIFTVLIIFIAFGRKIYKNMFKR
Sequences:
>Translated_516_residues MRKIIMFFLTIFFMALGGVVQATRTAHGSERDDNRVLLVYDSQNTVEQGEKKIDTLQRMLAGMGLKVKTVKESEYQKGEL NHSYQGVITMINWKQASLDNPTFVKDRNQYDGVKLHIGEGLDRTEQKQLQVKLKTIYQQQFILSDDSSTEMLPFVERMDV LTGVPKQAQSYGMLKTQNNEGQSYKYGVINQKQGYLPFFNNKGLGLITASKMIAILFNRQEETKPLLTITDVSPYSNLKL LDQLSVFCEKHGIPLAISTSTVAKNTEMHAYKRFTMYLRRLEDRGGVIFLQAPVIGGATADNAGELSELFDNYLLNLAQN QVYPVGISAQGFWNQDRVLRNSALKKANYQMLLPNKKVVYLDQDNQGGTNSRSYLALLASSFNKIKHQADVRFAMPTALT FKMPDSKVKLKNLKEQIQALNFEWQAPDEAINSKIDFASSSLAFQNGQYLVNGKETEVEVNSNMENTDKPTPTPALFKGF FRVEGQIITVFFAIIFTVLIIFIAFGRKIYKNMFKR >Mature_516_residues MRKIIMFFLTIFFMALGGVVQATRTAHGSERDDNRVLLVYDSQNTVEQGEKKIDTLQRMLAGMGLKVKTVKESEYQKGEL NHSYQGVITMINWKQASLDNPTFVKDRNQYDGVKLHIGEGLDRTEQKQLQVKLKTIYQQQFILSDDSSTEMLPFVERMDV LTGVPKQAQSYGMLKTQNNEGQSYKYGVINQKQGYLPFFNNKGLGLITASKMIAILFNRQEETKPLLTITDVSPYSNLKL LDQLSVFCEKHGIPLAISTSTVAKNTEMHAYKRFTMYLRRLEDRGGVIFLQAPVIGGATADNAGELSELFDNYLLNLAQN QVYPVGISAQGFWNQDRVLRNSALKKANYQMLLPNKKVVYLDQDNQGGTNSRSYLALLASSFNKIKHQADVRFAMPTALT FKMPDSKVKLKNLKEQIQALNFEWQAPDEAINSKIDFASSSLAFQNGQYLVNGKETEVEVNSNMENTDKPTPTPALFKGF FRVEGQIITVFFAIIFTVLIIFIAFGRKIYKNMFKR
Specific function: Unknown
COG id: COG5298
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58530; Mature: 58530
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKIIMFFLTIFFMALGGVVQATRTAHGSERDDNRVLLVYDSQNTVEQGEKKIDTLQRML CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH AGMGLKVKTVKESEYQKGELNHSYQGVITMINWKQASLDNPTFVKDRNQYDGVKLHIGEG HCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEECCCCCCCCEEEEECCC LDRTEQKQLQVKLKTIYQQQFILSDDSSTEMLPFVERMDVLTGVPKQAQSYGMLKTQNNE CCCCHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCHHHHHCCCEEECCCC GQSYKYGVINQKQGYLPFFNNKGLGLITASKMIAILFNRQEETKPLLTITDVSPYSNLKL CCCEEECCCCCCCCCCCEECCCCCEEEEHHHHHEEEECCCCCCCCEEEEECCCCCCCHHH LDQLSVFCEKHGIPLAISTSTVAKNTEMHAYKRFTMYLRRLEDRGGVIFLQAPVIGGATA HHHHHHHHHHCCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC DNAGELSELFDNYLLNLAQNQVYPVGISAQGFWNQDRVLRNSALKKANYQMLLPNKKVVY CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCEEEE LDQDNQGGTNSRSYLALLASSFNKIKHQADVRFAMPTALTFKMPDSKVKLKNLKEQIQAL EECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCEEEEECCCCHHHHHHHHHHHHHC NFEWQAPDEAINSKIDFASSSLAFQNGQYLVNGKETEVEVNSNMENTDKPTPTPALFKGF CCCCCCCHHHHCCCCCCCCCCEEEECCCEEECCCCEEEEECCCCCCCCCCCCCHHHHHHH FRVEGQIITVFFAIIFTVLIIFIAFGRKIYKNMFKR HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRKIIMFFLTIFFMALGGVVQATRTAHGSERDDNRVLLVYDSQNTVEQGEKKIDTLQRML CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH AGMGLKVKTVKESEYQKGELNHSYQGVITMINWKQASLDNPTFVKDRNQYDGVKLHIGEG HCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEECCCCCCCCEEEEECCC LDRTEQKQLQVKLKTIYQQQFILSDDSSTEMLPFVERMDVLTGVPKQAQSYGMLKTQNNE CCCCHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCHHHHHCCCEEECCCC GQSYKYGVINQKQGYLPFFNNKGLGLITASKMIAILFNRQEETKPLLTITDVSPYSNLKL CCCEEECCCCCCCCCCCEECCCCCEEEEHHHHHEEEECCCCCCCCEEEEECCCCCCCHHH LDQLSVFCEKHGIPLAISTSTVAKNTEMHAYKRFTMYLRRLEDRGGVIFLQAPVIGGATA HHHHHHHHHHCCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC DNAGELSELFDNYLLNLAQNQVYPVGISAQGFWNQDRVLRNSALKKANYQMLLPNKKVVY CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCEEEE LDQDNQGGTNSRSYLALLASSFNKIKHQADVRFAMPTALTFKMPDSKVKLKNLKEQIQAL EECCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCEEEEECCCCHHHHHHHHHHHHHC NFEWQAPDEAINSKIDFASSSLAFQNGQYLVNGKETEVEVNSNMENTDKPTPTPALFKGF CCCCCCCHHHHCCCCCCCCCCEEEECCCEEECCCCEEEEECCCCCCCCCCCCCHHHHHHH FRVEGQIITVFFAIIFTVLIIFIAFGRKIYKNMFKR HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA