| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is yeiH [C]
Identifier: 116492112
GI number: 116492112
Start: 352723
End: 353748
Strand: Direct
Name: yeiH [C]
Synonym: PEPE_0308
Alternate gene names: 116492112
Gene position: 352723-353748 (Clockwise)
Preceding gene: 116492108
Following gene: 116492114
Centisome position: 19.25
GC content: 39.77
Gene sequence:
>1026_bases ATGACTCGAATGATAAAAGATTCAAGTTTTTGGGTAGCTATATTAGTTACATTGCTTTGTGCAACAGCAGGATCGCTATT GGCGCAATTGCCTTACTTTAGTTTAATTGGAGCATTGGTAATTTCGCTGGTGTTAGGGATGTTTGTTCAAGTTAGCCCAG CAGTAGTTGAGCGTTCTAAAAAAGGTACTGGTTTTATTTCAAACAAGTTTTTGCGTTTAGGTATTATTTTATTAGGTTTT AAATTAAACTTGGTTGATTTAGCCGATGCGGGTGTTAAAACCATTCTATTAGCTATTTTCGTGGTTACATTTACAATTTT AGGTGTGTATACCTTGGCTCGTAAATTTGGTGTGGATTCTGATCTAGCAATCCTAGTTGCCAGTGGTACTGGTATTTGTG GGGCAGCAGCCGTAATGGGGGTTTCACCACAGATTCAAGTTCCTGAAGACCAACGTGAATTGAAACAAGAAAATGAGGTA ATGGCCATTGCGGCGGTTGCCATCTTGGGAACGTTATTTACTTTTATTGAAATTGGATTGAAACCCATGCTTCACTTAAC TCCAACTCAATTTGGGGTGGTAGCTGGTGGATCACTTCATGAAATTGCCCATGCGGTTGCTACCGGTGGAGCAGGTGGTC CGGTTAGTTTGGATACGGCGATTATTACTAAGTTATCTCGTGTTTTACTGCTAGCACCTGCTGCGTTAATTATTGGCTTT TGGCACCGTAGCCGTACAAATATAGATCGCGAAAACGTTGTTCGTGGGAAATTACCGATTCCATGGTTCATGGCGGGCTT TATTTTAGCTAGTGTAATTGGAACTTTTGTACCTTTAGGCGCAACTGTACTAGGCTGGTTAGTTAAATTTGCATACCTCT TCCTAGGAATGGCCATGGCTGCTTTGGGAATGTCCGTAAACTTCCGTGTTATTTTCAAACGTGGAAAAGGTGCATTTTTA GCTGCTTTCTTAGGTTCAATTGTATTATTGATTTTCGTAATTATTGTAAGTAAATTATTCTTCTAA
Upstream 100 bases:
>100_bases TAAGTTTAATTTATAAACCAATTATAAAACATAATTATATTTTATCTACCATTTTTGATACGATATTAAGCGTGAAGTTA AGAGATAGGAGAGAAGAAAG
Downstream 100 bases:
>100_bases AAAAATAAAAAACGAATTGATGGATTTGCGAAAAGGAGCAGAATCATCAATTCGTTTTTTTAATGACTTAAAATCGTCAT CATGATGGGGACCATTACCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MTRMIKDSSFWVAILVTLLCATAGSLLAQLPYFSLIGALVISLVLGMFVQVSPAVVERSKKGTGFISNKFLRLGIILLGF KLNLVDLADAGVKTILLAIFVVTFTILGVYTLARKFGVDSDLAILVASGTGICGAAAVMGVSPQIQVPEDQRELKQENEV MAIAAVAILGTLFTFIEIGLKPMLHLTPTQFGVVAGGSLHEIAHAVATGGAGGPVSLDTAIITKLSRVLLLAPAALIIGF WHRSRTNIDRENVVRGKLPIPWFMAGFILASVIGTFVPLGATVLGWLVKFAYLFLGMAMAALGMSVNFRVIFKRGKGAFL AAFLGSIVLLIFVIIVSKLFF
Sequences:
>Translated_341_residues MTRMIKDSSFWVAILVTLLCATAGSLLAQLPYFSLIGALVISLVLGMFVQVSPAVVERSKKGTGFISNKFLRLGIILLGF KLNLVDLADAGVKTILLAIFVVTFTILGVYTLARKFGVDSDLAILVASGTGICGAAAVMGVSPQIQVPEDQRELKQENEV MAIAAVAILGTLFTFIEIGLKPMLHLTPTQFGVVAGGSLHEIAHAVATGGAGGPVSLDTAIITKLSRVLLLAPAALIIGF WHRSRTNIDRENVVRGKLPIPWFMAGFILASVIGTFVPLGATVLGWLVKFAYLFLGMAMAALGMSVNFRVIFKRGKGAFL AAFLGSIVLLIFVIIVSKLFF >Mature_340_residues TRMIKDSSFWVAILVTLLCATAGSLLAQLPYFSLIGALVISLVLGMFVQVSPAVVERSKKGTGFISNKFLRLGIILLGFK LNLVDLADAGVKTILLAIFVVTFTILGVYTLARKFGVDSDLAILVASGTGICGAAAVMGVSPQIQVPEDQRELKQENEVM AIAAVAILGTLFTFIEIGLKPMLHLTPTQFGVVAGGSLHEIAHAVATGGAGGPVSLDTAIITKLSRVLLLAPAALIIGFW HRSRTNIDRENVVRGKLPIPWFMAGFILASVIGTFVPLGATVLGWLVKFAYLFLGMAMAALGMSVNFRVIFKRGKGAFLA AFLGSIVLLIFVIIVSKLFF
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=292, Percent_Identity=31.5068493150685, Blast_Score=133, Evalue=2e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 36237; Mature: 36106
Theoretical pI: Translated: 10.58; Mature: 10.58
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRMIKDSSFWVAILVTLLCATAGSLLAQLPYFSLIGALVISLVLGMFVQVSPAVVERSK CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC KGTGFISNKFLRLGIILLGFKLNLVDLADAGVKTILLAIFVVTFTILGVYTLARKFGVDS CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DLAILVASGTGICGAAAVMGVSPQIQVPEDQRELKQENEVMAIAAVAILGTLFTFIEIGL CCEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC KPMLHLTPTQFGVVAGGSLHEIAHAVATGGAGGPVSLDTAIITKLSRVLLLAPAALIIGF CHHEEECCCHHCEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH WHRSRTNIDRENVVRGKLPIPWFMAGFILASVIGTFVPLGATVLGWLVKFAYLFLGMAMA HHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALGMSVNFRVIFKRGKGAFLAAFLGSIVLLIFVIIVSKLFF HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TRMIKDSSFWVAILVTLLCATAGSLLAQLPYFSLIGALVISLVLGMFVQVSPAVVERSK CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC KGTGFISNKFLRLGIILLGFKLNLVDLADAGVKTILLAIFVVTFTILGVYTLARKFGVDS CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DLAILVASGTGICGAAAVMGVSPQIQVPEDQRELKQENEVMAIAAVAILGTLFTFIEIGL CCEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC KPMLHLTPTQFGVVAGGSLHEIAHAVATGGAGGPVSLDTAIITKLSRVLLLAPAALIIGF CHHEEECCCHHCEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH WHRSRTNIDRENVVRGKLPIPWFMAGFILASVIGTFVPLGATVLGWLVKFAYLFLGMAMA HHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALGMSVNFRVIFKRGKGAFLAAFLGSIVLLIFVIIVSKLFF HHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA