Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is cyoE [H]
Identifier: 116515211
GI number: 116515211
Start: 325934
End: 326854
Strand: Reverse
Name: cyoE [H]
Synonym: BCc_287
Alternate gene names: 116515211
Gene position: 326854-325934 (Counterclockwise)
Preceding gene: 116515212
Following gene: 116515203
Centisome position: 78.5
GC content: 15.85
Gene sequence:
>921_bases ATGGATTTTCGACAATTTAAATCATTAATATCAATTTTTTTTGTTTTTTTTAAAAATAATAAAATATTTAATATTATTGA ATTGATAAAACCCGGGATTATTTTAGGAAATATTATTTGTTTATCTGGAGGATTTTTTTTAGCTTTAAATGAAAAGTTAT CAAAAATTTTTTTTTTAAAAACAGTTTTTGGTTTAATACTTATTATTTCATCATCTTGTATATTAAATAATATTATTGAT AGAGATATAGATAAAAAAATGAATAGAACTAAAAATAGATTTTTATGTATAAATACTAATGTTTTTTTATTAAAAATATT ATTTTTTTTTTCTATTATATTATTAATTTTAGGCTTGTTAGTTTTTTATATATATATAAATTTTTTATGTACAATAATTT CTTTTTTTGGATTTTTTTTTTATGTTTATTTATATTCTTATTTATTTAAAAGAAAAACATATTTTTCAACTTTTGTAGGT AGTGTTTCTGGATCTTTACCACCTATTATAGGGTATGTTGCTGTTAATAATTGTTTAAATAGATGTTGTACAATTTTGTT TTTTATGTTTTCTTTTTGGCAAATTGCACATTCTTATTCTATAATAATATATAGATATTCAGATTATAAATTATTAAATC TTCCAGTATTTCCGATTTTATATGGAAAATTAAAAACAATAATTTTTATTTCAATATGTATTTTGAATTTATTTTTTTTT AATTTTTTATTATATTTTTTTGGTTATGTAAAGTTTTTTTATTTTTTGTATACTAGTTTTTTTATCTTTCTATGGTTTAT TTTTTCTTTTTTAAGTAATTCTAGATATTTTACAATTAAAATTTGGTCTCGAATTATGTTTTTCTTTTCTATATTTATTA TTTTTATGATAAGTTTTTTAATGAGTTTAAATAATTTTTAA
Upstream 100 bases:
>100_bases AATATTTTTTTGAAATTAATATTTCTCAAAAAAATTTTTTAATTATATTATCATTAATATTTACTATCATTATTATCTGT ATTATTAGTATAGGATCTTT
Downstream 100 bases:
>100_bases AAATTTTTTTTAAAAACAATTATTATTAATTGGTAATCCTGATATTTGACTAGCATATTTAATAAATCCTTTTGGAAATA GGATAAATAAATCTTGACTA
Product: CyoE
Products: NA
Alternate protein names: Heme B farnesyltransferase; Heme O synthase [H]
Number of amino acids: Translated: 306; Mature: 306
Protein sequence:
>306_residues MDFRQFKSLISIFFVFFKNNKIFNIIELIKPGIILGNIICLSGGFFLALNEKLSKIFFLKTVFGLILIISSSCILNNIID RDIDKKMNRTKNRFLCINTNVFLLKILFFFSIILLILGLLVFYIYINFLCTIISFFGFFFYVYLYSYLFKRKTYFSTFVG SVSGSLPPIIGYVAVNNCLNRCCTILFFMFSFWQIAHSYSIIIYRYSDYKLLNLPVFPILYGKLKTIIFISICILNLFFF NFLLYFFGYVKFFYFLYTSFFIFLWFIFSFLSNSRYFTIKIWSRIMFFFSIFIIFMISFLMSLNNF
Sequences:
>Translated_306_residues MDFRQFKSLISIFFVFFKNNKIFNIIELIKPGIILGNIICLSGGFFLALNEKLSKIFFLKTVFGLILIISSSCILNNIID RDIDKKMNRTKNRFLCINTNVFLLKILFFFSIILLILGLLVFYIYINFLCTIISFFGFFFYVYLYSYLFKRKTYFSTFVG SVSGSLPPIIGYVAVNNCLNRCCTILFFMFSFWQIAHSYSIIIYRYSDYKLLNLPVFPILYGKLKTIIFISICILNLFFF NFLLYFFGYVKFFYFLYTSFFIFLWFIFSFLSNSRYFTIKIWSRIMFFFSIFIIFMISFLMSLNNF >Mature_306_residues MDFRQFKSLISIFFVFFKNNKIFNIIELIKPGIILGNIICLSGGFFLALNEKLSKIFFLKTVFGLILIISSSCILNNIID RDIDKKMNRTKNRFLCINTNVFLLKILFFFSIILLILGLLVFYIYINFLCTIISFFGFFFYVYLYSYLFKRKTYFSTFVG SVSGSLPPIIGYVAVNNCLNRCCTILFFMFSFWQIAHSYSIIIYRYSDYKLLNLPVFPILYGKLKTIIFISICILNLFFF NFLLYFFGYVKFFYFLYTSFFIFLWFIFSFLSNSRYFTIKIWSRIMFFFSIFIIFMISFLMSLNNF
Specific function: Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group [H]
COG id: COG0109
COG function: function code O; Polyprenyltransferase (cytochrome oxidase assembly factor)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ubiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786631, Length=279, Percent_Identity=35.4838709677419, Blast_Score=193, Evalue=1e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006369 - InterPro: IPR000537 [H]
Pfam domain/function: PF01040 UbiA [H]
EC number: 2.5.1.-
Molecular weight: Translated: 36612; Mature: 36612
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: PS00943 UBIA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFRQFKSLISIFFVFFKNNKIFNIIELIKPGIILGNIICLSGGFFLALNEKLSKIFFLK CCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCHHEEHHHHHHHHHHHH TVFGLILIISSSCILNNIIDRDIDKKMNRTKNRFLCINTNVFLLKILFFFSIILLILGLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH VFYIYINFLCTIISFFGFFFYVYLYSYLFKRKTYFSTFVGSVSGSLPPIIGYVAVNNCLN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH RCCTILFFMFSFWQIAHSYSIIIYRYSDYKLLNLPVFPILYGKLKTIIFISICILNLFFF HHHHHHHHHHHHHHHHHHHEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH NFLLYFFGYVKFFYFLYTSFFIFLWFIFSFLSNSRYFTIKIWSRIMFFFSIFIIFMISFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHH MSLNNF HHHCCC >Mature Secondary Structure MDFRQFKSLISIFFVFFKNNKIFNIIELIKPGIILGNIICLSGGFFLALNEKLSKIFFLK CCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCHHEEHHHHHHHHHHHH TVFGLILIISSSCILNNIIDRDIDKKMNRTKNRFLCINTNVFLLKILFFFSIILLILGLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH VFYIYINFLCTIISFFGFFFYVYLYSYLFKRKTYFSTFVGSVSGSLPPIIGYVAVNNCLN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH RCCTILFFMFSFWQIAHSYSIIIYRYSDYKLLNLPVFPILYGKLKTIIFISICILNLFFF HHHHHHHHHHHHHHHHHHHEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH NFLLYFFGYVKFFYFLYTSFFIFLWFIFSFLSNSRYFTIKIWSRIMFFFSIFIIFMISFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHH MSLNNF HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA