Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is holA [H]
Identifier: 116515201
GI number: 116515201
Start: 310302
End: 311294
Strand: Direct
Name: holA [H]
Synonym: BCc_275
Alternate gene names: 116515201
Gene position: 310302-311294 (Clockwise)
Preceding gene: 116515200
Following gene: 116515202
Centisome position: 74.52
GC content: 10.17
Gene sequence:
>993_bases ATGTTTACTGATCCAATTAATTTAAAAAAAAAAATAAAAAAAAGAAATATATTTACATTTATTATTTTAGAATCAAAATA TTTTTTAATTAAAATAAATAAAAAAATTATTTTAAAATATTTTAGAAAAAAAAAATATAAAAAAAAAGAACTAATTATAA ATAATGAAGATGATTGGAAAAATATTATTAATATGTTTAAAAAACAAGATTTATTTGCTAAAAAAAAAATATTTTTTATT ACAATAAATAGTTTATTTATATCTATAAATACTAAATTATATATGAATCAAATAAGAAATTATTCGAATAAAAAAATCAT AAATATCCTTTTTTTTCCAAAATTAATTTATTCAAATTTTAATCTTGTCTTTTTCAAAAATTATATTGAAAATTCTGGAA TTATTATAAACAATTCTAATACATATATTAAAAATATACATTTTTATATAAATCAGAAAATAAAAAAAAAAATTCTTATT AAAGAAAATGCAAAAAAAATTTTATTAAAAAAAAAATATAGAAATATTTCTTTTTTTATAAATTTTTTAAAAAATATTTT TTTATTATATCCAAAAACTGTTATAACAAAAAAAATGATCTTGAATTTTTATAAATCTACTAAAACTTTTAATTATATTG ATTGGTTAATATCCATTTTAAAATATAAAAAAAAAAGATCAATTAAAATTCTTAATATATTAGAAAAACAAAAATATGAT TATTTAATTTTAATAAAATCATATAAAATATTATTATATTTTATAATATACAAACAAGAAAAGAAAAATTTTAATAATAT ATTTATAAATTCAAAAAAACATATTAATCAAATAAAAAAAATATATTTATCTTTTTTAATAAAAATAAAAAATATAAAAA CAATACAATTAGCATTAAAATTATTAAAAAAAATTGAATTATGTATTTTAAATAATGAAAAAAAAAAAATAATTTGGATG CATTTAAAAACTTTATCAATTATTTTTAATTAA
Upstream 100 bases:
>100_bases AAATAATCAAAAAAACTATTTATATTCCTAATAAAGTTATTAATTTTGTATTATAAAAAATTAATTAAATTTTAATTTAT AAAATTTAAAAAGAAAAATT
Downstream 100 bases:
>100_bases ATATTTAATAATATTATTATAATATTTAATTAAAAAAGATTAATTACATAAAAAAATGATAATTAAATTAAATTTATTAG GATTACGTTGTCCAGAATTA
Product: DNA polymerase III, d subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MFTDPINLKKKIKKRNIFTFIILESKYFLIKINKKIILKYFRKKKYKKKELIINNEDDWKNIINMFKKQDLFAKKKIFFI TINSLFISINTKLYMNQIRNYSNKKIINILFFPKLIYSNFNLVFFKNYIENSGIIINNSNTYIKNIHFYINQKIKKKILI KENAKKILLKKKYRNISFFINFLKNIFLLYPKTVITKKMILNFYKSTKTFNYIDWLISILKYKKKRSIKILNILEKQKYD YLILIKSYKILLYFIIYKQEKKNFNNIFINSKKHINQIKKIYLSFLIKIKNIKTIQLALKLLKKIELCILNNEKKKIIWM HLKTLSIIFN
Sequences:
>Translated_330_residues MFTDPINLKKKIKKRNIFTFIILESKYFLIKINKKIILKYFRKKKYKKKELIINNEDDWKNIINMFKKQDLFAKKKIFFI TINSLFISINTKLYMNQIRNYSNKKIINILFFPKLIYSNFNLVFFKNYIENSGIIINNSNTYIKNIHFYINQKIKKKILI KENAKKILLKKKYRNISFFINFLKNIFLLYPKTVITKKMILNFYKSTKTFNYIDWLISILKYKKKRSIKILNILEKQKYD YLILIKSYKILLYFIIYKQEKKNFNNIFINSKKHINQIKKIYLSFLIKIKNIKTIQLALKLLKKIELCILNNEKKKIIWM HLKTLSIIFN >Mature_330_residues MFTDPINLKKKIKKRNIFTFIILESKYFLIKINKKIILKYFRKKKYKKKELIINNEDDWKNIINMFKKQDLFAKKKIFFI TINSLFISINTKLYMNQIRNYSNKKIINILFFPKLIYSNFNLVFFKNYIENSGIIINNSNTYIKNIHFYINQKIKKKILI KENAKKILLKKKYRNISFFINFLKNIFLLYPKTVITKKMILNFYKSTKTFNYIDWLISILKYKKKRSIKILNILEKQKYD YLILIKSYKILLYFIIYKQEKKNFNNIFINSKKHINQIKKIYLSFLIKIKNIKTIQLALKLLKKIELCILNNEKKKIIWM HLKTLSIIFN
Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The delta subunit seems to interact with the gamma subunit to transfer the b
COG id: COG1466
COG function: function code L; DNA polymerase III, delta subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008921 - InterPro: IPR010372 - InterPro: IPR005790 [H]
Pfam domain/function: PF06144 DNA_pol3_delta [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 40431; Mature: 40431
Theoretical pI: Translated: 10.94; Mature: 10.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFTDPINLKKKIKKRNIFTFIILESKYFLIKINKKIILKYFRKKKYKKKELIINNEDDWK CCCCCCCHHHHHHHCCEEEEEEEECCEEEEEECHHHHHHHHHHHCCCCCCEEECCCCHHH NIINMFKKQDLFAKKKIFFITINSLFISINTKLYMNQIRNYSNKKIINILFFPKLIYSNF HHHHHHHHCCHHHCCEEEEEEEEEEEEEECHHHHHHHHCCCCCCEEEEEEEHHHHHHCCC NLVFFKNYIENSGIIINNSNTYIKNIHFYINQKIKKKILIKENAKKILLKKKYRNISFFI CEEEEEEECCCCCEEEECCCCEEEEEEEEECHHHHHHEEECCCHHHHHHHHHHHHHHHHH NFLKNIFLLYPKTVITKKMILNFYKSTKTFNYIDWLISILKYKKKRSIKILNILEKQKYD HHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC YLILIKSYKILLYFIIYKQEKKNFNNIFINSKKHINQIKKIYLSFLIKIKNIKTIQLALK EEEEEEHHHEEEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LLKKIELCILNNEKKKIIWMHLKTLSIIFN HHHHHEEEEECCCCCEEEEEEEEEEEEEEC >Mature Secondary Structure MFTDPINLKKKIKKRNIFTFIILESKYFLIKINKKIILKYFRKKKYKKKELIINNEDDWK CCCCCCCHHHHHHHCCEEEEEEEECCEEEEEECHHHHHHHHHHHCCCCCCEEECCCCHHH NIINMFKKQDLFAKKKIFFITINSLFISINTKLYMNQIRNYSNKKIINILFFPKLIYSNF HHHHHHHHCCHHHCCEEEEEEEEEEEEEECHHHHHHHHCCCCCCEEEEEEEHHHHHHCCC NLVFFKNYIENSGIIINNSNTYIKNIHFYINQKIKKKILIKENAKKILLKKKYRNISFFI CEEEEEEECCCCCEEEECCCCEEEEEEEEECHHHHHHEEECCCHHHHHHHHHHHHHHHHH NFLKNIFLLYPKTVITKKMILNFYKSTKTFNYIDWLISILKYKKKRSIKILNILEKQKYD HHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC YLILIKSYKILLYFIIYKQEKKNFNNIFINSKKHINQIKKIYLSFLIKIKNIKTIQLALK EEEEEEHHHEEEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LLKKIELCILNNEKKKIIWMHLKTLSIIFN HHHHHEEEEECCCCCEEEEEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10993077 [H]