Definition Buchnera aphidicola str. Cc (Cinara cedri), complete genome.
Accession NC_008513
Length 416,380

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The map label for this gene is holA [H]

Identifier: 116515201

GI number: 116515201

Start: 310302

End: 311294

Strand: Direct

Name: holA [H]

Synonym: BCc_275

Alternate gene names: 116515201

Gene position: 310302-311294 (Clockwise)

Preceding gene: 116515200

Following gene: 116515202

Centisome position: 74.52

GC content: 10.17

Gene sequence:

>993_bases
ATGTTTACTGATCCAATTAATTTAAAAAAAAAAATAAAAAAAAGAAATATATTTACATTTATTATTTTAGAATCAAAATA
TTTTTTAATTAAAATAAATAAAAAAATTATTTTAAAATATTTTAGAAAAAAAAAATATAAAAAAAAAGAACTAATTATAA
ATAATGAAGATGATTGGAAAAATATTATTAATATGTTTAAAAAACAAGATTTATTTGCTAAAAAAAAAATATTTTTTATT
ACAATAAATAGTTTATTTATATCTATAAATACTAAATTATATATGAATCAAATAAGAAATTATTCGAATAAAAAAATCAT
AAATATCCTTTTTTTTCCAAAATTAATTTATTCAAATTTTAATCTTGTCTTTTTCAAAAATTATATTGAAAATTCTGGAA
TTATTATAAACAATTCTAATACATATATTAAAAATATACATTTTTATATAAATCAGAAAATAAAAAAAAAAATTCTTATT
AAAGAAAATGCAAAAAAAATTTTATTAAAAAAAAAATATAGAAATATTTCTTTTTTTATAAATTTTTTAAAAAATATTTT
TTTATTATATCCAAAAACTGTTATAACAAAAAAAATGATCTTGAATTTTTATAAATCTACTAAAACTTTTAATTATATTG
ATTGGTTAATATCCATTTTAAAATATAAAAAAAAAAGATCAATTAAAATTCTTAATATATTAGAAAAACAAAAATATGAT
TATTTAATTTTAATAAAATCATATAAAATATTATTATATTTTATAATATACAAACAAGAAAAGAAAAATTTTAATAATAT
ATTTATAAATTCAAAAAAACATATTAATCAAATAAAAAAAATATATTTATCTTTTTTAATAAAAATAAAAAATATAAAAA
CAATACAATTAGCATTAAAATTATTAAAAAAAATTGAATTATGTATTTTAAATAATGAAAAAAAAAAAATAATTTGGATG
CATTTAAAAACTTTATCAATTATTTTTAATTAA

Upstream 100 bases:

>100_bases
AAATAATCAAAAAAACTATTTATATTCCTAATAAAGTTATTAATTTTGTATTATAAAAAATTAATTAAATTTTAATTTAT
AAAATTTAAAAAGAAAAATT

Downstream 100 bases:

>100_bases
ATATTTAATAATATTATTATAATATTTAATTAAAAAAGATTAATTACATAAAAAAATGATAATTAAATTAAATTTATTAG
GATTACGTTGTCCAGAATTA

Product: DNA polymerase III, d subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MFTDPINLKKKIKKRNIFTFIILESKYFLIKINKKIILKYFRKKKYKKKELIINNEDDWKNIINMFKKQDLFAKKKIFFI
TINSLFISINTKLYMNQIRNYSNKKIINILFFPKLIYSNFNLVFFKNYIENSGIIINNSNTYIKNIHFYINQKIKKKILI
KENAKKILLKKKYRNISFFINFLKNIFLLYPKTVITKKMILNFYKSTKTFNYIDWLISILKYKKKRSIKILNILEKQKYD
YLILIKSYKILLYFIIYKQEKKNFNNIFINSKKHINQIKKIYLSFLIKIKNIKTIQLALKLLKKIELCILNNEKKKIIWM
HLKTLSIIFN

Sequences:

>Translated_330_residues
MFTDPINLKKKIKKRNIFTFIILESKYFLIKINKKIILKYFRKKKYKKKELIINNEDDWKNIINMFKKQDLFAKKKIFFI
TINSLFISINTKLYMNQIRNYSNKKIINILFFPKLIYSNFNLVFFKNYIENSGIIINNSNTYIKNIHFYINQKIKKKILI
KENAKKILLKKKYRNISFFINFLKNIFLLYPKTVITKKMILNFYKSTKTFNYIDWLISILKYKKKRSIKILNILEKQKYD
YLILIKSYKILLYFIIYKQEKKNFNNIFINSKKHINQIKKIYLSFLIKIKNIKTIQLALKLLKKIELCILNNEKKKIIWM
HLKTLSIIFN
>Mature_330_residues
MFTDPINLKKKIKKRNIFTFIILESKYFLIKINKKIILKYFRKKKYKKKELIINNEDDWKNIINMFKKQDLFAKKKIFFI
TINSLFISINTKLYMNQIRNYSNKKIINILFFPKLIYSNFNLVFFKNYIENSGIIINNSNTYIKNIHFYINQKIKKKILI
KENAKKILLKKKYRNISFFINFLKNIFLLYPKTVITKKMILNFYKSTKTFNYIDWLISILKYKKKRSIKILNILEKQKYD
YLILIKSYKILLYFIIYKQEKKNFNNIFINSKKHINQIKKIYLSFLIKIKNIKTIQLALKLLKKIELCILNNEKKKIIWM
HLKTLSIIFN

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The delta subunit seems to interact with the gamma subunit to transfer the b

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008921
- InterPro:   IPR010372
- InterPro:   IPR005790 [H]

Pfam domain/function: PF06144 DNA_pol3_delta [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 40431; Mature: 40431

Theoretical pI: Translated: 10.94; Mature: 10.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTDPINLKKKIKKRNIFTFIILESKYFLIKINKKIILKYFRKKKYKKKELIINNEDDWK
CCCCCCCHHHHHHHCCEEEEEEEECCEEEEEECHHHHHHHHHHHCCCCCCEEECCCCHHH
NIINMFKKQDLFAKKKIFFITINSLFISINTKLYMNQIRNYSNKKIINILFFPKLIYSNF
HHHHHHHHCCHHHCCEEEEEEEEEEEEEECHHHHHHHHCCCCCCEEEEEEEHHHHHHCCC
NLVFFKNYIENSGIIINNSNTYIKNIHFYINQKIKKKILIKENAKKILLKKKYRNISFFI
CEEEEEEECCCCCEEEECCCCEEEEEEEEECHHHHHHEEECCCHHHHHHHHHHHHHHHHH
NFLKNIFLLYPKTVITKKMILNFYKSTKTFNYIDWLISILKYKKKRSIKILNILEKQKYD
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
YLILIKSYKILLYFIIYKQEKKNFNNIFINSKKHINQIKKIYLSFLIKIKNIKTIQLALK
EEEEEEHHHEEEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LLKKIELCILNNEKKKIIWMHLKTLSIIFN
HHHHHEEEEECCCCCEEEEEEEEEEEEEEC
>Mature Secondary Structure
MFTDPINLKKKIKKRNIFTFIILESKYFLIKINKKIILKYFRKKKYKKKELIINNEDDWK
CCCCCCCHHHHHHHCCEEEEEEEECCEEEEEECHHHHHHHHHHHCCCCCCEEECCCCHHH
NIINMFKKQDLFAKKKIFFITINSLFISINTKLYMNQIRNYSNKKIINILFFPKLIYSNF
HHHHHHHHCCHHHCCEEEEEEEEEEEEEECHHHHHHHHCCCCCCEEEEEEEHHHHHHCCC
NLVFFKNYIENSGIIINNSNTYIKNIHFYINQKIKKKILIKENAKKILLKKKYRNISFFI
CEEEEEEECCCCCEEEECCCCEEEEEEEEECHHHHHHEEECCCHHHHHHHHHHHHHHHHH
NFLKNIFLLYPKTVITKKMILNFYKSTKTFNYIDWLISILKYKKKRSIKILNILEKQKYD
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
YLILIKSYKILLYFIIYKQEKKNFNNIFINSKKHINQIKKIYLSFLIKIKNIKTIQLALK
EEEEEEHHHEEEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LLKKIELCILNNEKKKIIWMHLKTLSIIFN
HHHHHEEEEECCCCCEEEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]