Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is rpiA [H]
Identifier: 116515188
GI number: 116515188
Start: 290883
End: 291539
Strand: Reverse
Name: rpiA [H]
Synonym: BCc_259
Alternate gene names: 116515188
Gene position: 291539-290883 (Counterclockwise)
Preceding gene: 116515192
Following gene: 116515187
Centisome position: 70.02
GC content: 23.29
Gene sequence:
>657_bases ATGTTTGATACGTTAAAAAAATCTGTAGCAAAATATGCACTGTCATATATAAAAAAAAATTCTATTATTGGAATTGGGTC AGGATCTACTATAGAATTTTTTATTAAAGAGTTATATACAATTTTTTCAAATATACAAGGTGTTGTAGTCAGTTCAAAAA AATCAGAAAAATTATTAAAAAAAATTAATATTCCAATTTATGATTTAAATTCTATACAAAATTTAGATATTTATATAGAT AGTGCTGATCAAGTAAATTCTTCATTAGAAATGATTAAGGGTGGAGGAGGGGCTTTAACTCGAGAAAAAATTATAGCTTC TGCAGCAAAAAGATTTTTATGTATTATTGATAAATCAAAGTATGTTAATACATTTAATAATTTTCCAATACCCATAGAAG TTATTCCTATGTCACTTATGTTTGTTTCTAGAGAAATTCTAAAAATGGGTGGATTCGTAAAATACAGAAAAAATTTTATT ACTGATAATGGTAATTATATTATTGATGCATATAATTTAAATGTTATATACCCTACTAATTTAGAAAAAATTATTAATAA TATTCCCGGAGTAGTTTCTGTAGGTTTATTTTGTATTCGAAAGGCTGATACTTTATTAATAAGTTATTCCAATTATGTTC GAACAATAATTTTATAA
Upstream 100 bases:
>100_bases TTTTGATACCGGCATCCCTGGTTCGAATCCAGGTACCCCAGATAAATTTTTTTTTATTTTTAAAAATTTTTCTTTTTAAT GTATTTTATATGGGTGATAT
Downstream 100 bases:
>100_bases TTAAATATTTTTTATAATTAAATTTTTATAGAGAAAAATTTTATGTCATTAAAATCTTTAGATATAGAAGTTTTTGGTAG ACTTATAAAAGTCAATTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: Phosphoriboisomerase A; PRI [H]
Number of amino acids: Translated: 218; Mature: 218
Protein sequence:
>218_residues MFDTLKKSVAKYALSYIKKNSIIGIGSGSTIEFFIKELYTIFSNIQGVVVSSKKSEKLLKKINIPIYDLNSIQNLDIYID SADQVNSSLEMIKGGGGALTREKIIASAAKRFLCIIDKSKYVNTFNNFPIPIEVIPMSLMFVSREILKMGGFVKYRKNFI TDNGNYIIDAYNLNVIYPTNLEKIINNIPGVVSVGLFCIRKADTLLISYSNYVRTIIL
Sequences:
>Translated_218_residues MFDTLKKSVAKYALSYIKKNSIIGIGSGSTIEFFIKELYTIFSNIQGVVVSSKKSEKLLKKINIPIYDLNSIQNLDIYID SADQVNSSLEMIKGGGGALTREKIIASAAKRFLCIIDKSKYVNTFNNFPIPIEVIPMSLMFVSREILKMGGFVKYRKNFI TDNGNYIIDAYNLNVIYPTNLEKIINNIPGVVSVGLFCIRKADTLLISYSNYVRTIIL >Mature_218_residues MFDTLKKSVAKYALSYIKKNSIIGIGSGSTIEFFIKELYTIFSNIQGVVVSSKKSEKLLKKINIPIYDLNSIQNLDIYID SADQVNSSLEMIKGGGGALTREKIIASAAKRFLCIIDKSKYVNTFNNFPIPIEVIPMSLMFVSREILKMGGFVKYRKNFI TDNGNYIIDAYNLNVIYPTNLEKIINNIPGVVSVGLFCIRKADTLLISYSNYVRTIIL
Specific function: Nonoxidative branch of the pentose phosphate pathway. [C]
COG id: COG0120
COG function: function code G; Ribose 5-phosphate isomerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribose 5-phosphate isomerase family [H]
Homologues:
Organism=Homo sapiens, GI94536842, Length=209, Percent_Identity=36.8421052631579, Blast_Score=116, Evalue=2e-26, Organism=Escherichia coli, GI1789280, Length=215, Percent_Identity=48.3720930232558, Blast_Score=230, Evalue=4e-62, Organism=Caenorhabditis elegans, GI17551758, Length=224, Percent_Identity=32.5892857142857, Blast_Score=113, Evalue=6e-26, Organism=Saccharomyces cerevisiae, GI6324669, Length=200, Percent_Identity=30.5, Blast_Score=88, Evalue=1e-18, Organism=Drosophila melanogaster, GI281364072, Length=198, Percent_Identity=32.8282828282828, Blast_Score=93, Evalue=1e-19,
Paralogues:
None
Copy number: 740 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004788 - InterPro: IPR020672 [H]
Pfam domain/function: PF06026 Rib_5-P_isom_A [H]
EC number: =5.3.1.6 [H]
Molecular weight: Translated: 24481; Mature: 24481
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDTLKKSVAKYALSYIKKNSIIGIGSGSTIEFFIKELYTIFSNIQGVVVSSKKSEKLLK CCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH KINIPIYDLNSIQNLDIYIDSADQVNSSLEMIKGGGGALTREKIIASAAKRFLCIIDKSK HHCCCEEECCCCCEEEEEEECHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEECCH YVNTFNNFPIPIEVIPMSLMFVSREILKMGGFVKYRKNFITDNGNYIIDAYNLNVIYPTN HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHEECCCCCEEEEEEEEEEEECCC LEKIINNIPGVVSVGLFCIRKADTLLISYSNYVRTIIL HHHHHHCCCCHHHHHHHHHHCCCEEEEEECHHEEEEEC >Mature Secondary Structure MFDTLKKSVAKYALSYIKKNSIIGIGSGSTIEFFIKELYTIFSNIQGVVVSSKKSEKLLK CCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH KINIPIYDLNSIQNLDIYIDSADQVNSSLEMIKGGGGALTREKIIASAAKRFLCIIDKSK HHCCCEEECCCCCEEEEEEECHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEECCH YVNTFNNFPIPIEVIPMSLMFVSREILKMGGFVKYRKNFITDNGNYIIDAYNLNVIYPTN HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHEECCCCCEEEEEEEEEEEECCC LEKIINNIPGVVSVGLFCIRKADTLLISYSNYVRTIIL HHHHHHCCCCHHHHHHHHHHCCCEEEEEECHHEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA