Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
---|---|
Accession | NC_008513 |
Length | 416,380 |
Click here to switch to the map view.
The map label for this gene is pykA [H]
Identifier: 116515134
GI number: 116515134
Start: 232481
End: 233920
Strand: Reverse
Name: pykA [H]
Synonym: BCc_198
Alternate gene names: 116515134
Gene position: 233920-232481 (Counterclockwise)
Preceding gene: 116515139
Following gene: 116515129
Centisome position: 56.18
GC content: 24.24
Gene sequence:
>1440_bases ATGATACATTTTTTTAGAAGAACAAAAATTATTTCTACATTGGGACCATCTACAGATAAAAAAAGTGTATTAAAAAAAAT AATACAATCCGGAGCAAATGCATTAAGATTAAATTTTTCTCATGGTACTTCTATAGATCACATAAATAGAGTAAAAAATA TTCGAGAAATTGAAAAAGAATTAAATTGTTTTGTTTCTTTAATTGGTGATTTACAAGGACCGAAAATTAGAATTTCTAGT TTTAAAAAAAAAAAAATTTTTTTAAATAAAGGAGATAATTTTTTATTAGATTTAAGTATTCCAAAATATTATGGTAATAA AAATTCTGTAGGTATTAATTATAAAAATTTACCTAATGAAGTTAATTCTGGCGACATTCTCTTATTAGATGACGGAAAAA TACAATTACGAGTTTTAAAAAAAAATAATAGAAAAATTTTTACTAAAGTAATTATTGGAGGATATTTATCTGATAATAAA GGTTTAAATAAATTAGGAGGAGGACTATCAGCATCTGCATTAACAAAAAAAGATGAAAAAGACATAAAATTAGCCGCAAT GTTAGGAGTAGATTATATAGCTGTGTCTTTTCCTAGATCTAAAGAAGATTTACAAAAAGCACGAAAATTAATAAAAAAAT CAGGTAGTAAAGCTAAAATTATTGCAAAAATTGAACGAGCAGAAGCTGTATCATCAAACAATGTAATGAAAGATATAATT TTAGAATCTGATGTTATTATGATTGCTAGAGGAGATTTAGGAGTAGAAATCGGTGATCATGAGTTAATTGGAATACAAAA AAAATTAATTTCAATGACTAGAAAATTAAATCGAATAGTAATTACTGCTACACAAATGATGGAATCAATGATAGAAAATC CTTTTCCTACTAGAGCAGAAGTTATGGATATTGCAAATTCTGTATTAGATGGTACAGATGCGGTTATGTTATCAGCAGAA ACTGCATCAGGCAGTTTTCCTGAAATAACAGTAAAAACTATGTCAAAAATTTGTTTAGGAGCTGAAAAAGTTCCTAGTGC AAAAATTTCTAAACATCGTTTAAATGAAAAATTTAGTGATGTTGATGAAACTATTGCTATGTCTGCTATGTATTCTGCTA ATCATTTAAAAAATGTTTCTGCAATAATAATTTTTTTAACATCAAGAAAAATTGCTTTGTTAGCATCAAGAATTACATCA GGATTACCTATTTTTTATATATCAAATTGTGTTAAAAAACTTCGTCTATCAACATTATATCGAGGTGTAATTCCTATTTA TTTTAATAAAAATAATTTTAATAATCATGATAAAGTTATAATAAAGTTTCTAAAAAAGAAAAAATTTTTAAAAAAAAATG AAATTATTGTCATTATAAAAAATGATTTAGAAAGAAACAGTAAAATTACAAATACTTGTAAAATTATCAATGTAACATAA
Upstream 100 bases:
>100_bases TTATAATAAATAAAATATACATATATTTTTATATAAAATTGATTATTTTTTATATATATTTATTTAAAATATTTCTCTTA TTTTTAAAGGAAATTTAAGT
Downstream 100 bases:
>100_bases TTATTTTATTAATTTAATTAAATTAAAATTTCTGTTTTGATTATATATGAATAAATATATTTTATTTTTGTATAAAAATA TTTTTATTAATATGCTAATT
Product: PykA
Products: NA
Alternate protein names: PK [H]
Number of amino acids: Translated: 479; Mature: 479
Protein sequence:
>479_residues MIHFFRRTKIISTLGPSTDKKSVLKKIIQSGANALRLNFSHGTSIDHINRVKNIREIEKELNCFVSLIGDLQGPKIRISS FKKKKIFLNKGDNFLLDLSIPKYYGNKNSVGINYKNLPNEVNSGDILLLDDGKIQLRVLKKNNRKIFTKVIIGGYLSDNK GLNKLGGGLSASALTKKDEKDIKLAAMLGVDYIAVSFPRSKEDLQKARKLIKKSGSKAKIIAKIERAEAVSSNNVMKDII LESDVIMIARGDLGVEIGDHELIGIQKKLISMTRKLNRIVITATQMMESMIENPFPTRAEVMDIANSVLDGTDAVMLSAE TASGSFPEITVKTMSKICLGAEKVPSAKISKHRLNEKFSDVDETIAMSAMYSANHLKNVSAIIIFLTSRKIALLASRITS GLPIFYISNCVKKLRLSTLYRGVIPIYFNKNNFNNHDKVIIKFLKKKKFLKKNEIIVIIKNDLERNSKITNTCKIINVT
Sequences:
>Translated_479_residues MIHFFRRTKIISTLGPSTDKKSVLKKIIQSGANALRLNFSHGTSIDHINRVKNIREIEKELNCFVSLIGDLQGPKIRISS FKKKKIFLNKGDNFLLDLSIPKYYGNKNSVGINYKNLPNEVNSGDILLLDDGKIQLRVLKKNNRKIFTKVIIGGYLSDNK GLNKLGGGLSASALTKKDEKDIKLAAMLGVDYIAVSFPRSKEDLQKARKLIKKSGSKAKIIAKIERAEAVSSNNVMKDII LESDVIMIARGDLGVEIGDHELIGIQKKLISMTRKLNRIVITATQMMESMIENPFPTRAEVMDIANSVLDGTDAVMLSAE TASGSFPEITVKTMSKICLGAEKVPSAKISKHRLNEKFSDVDETIAMSAMYSANHLKNVSAIIIFLTSRKIALLASRITS GLPIFYISNCVKKLRLSTLYRGVIPIYFNKNNFNNHDKVIIKFLKKKKFLKKNEIIVIIKNDLERNSKITNTCKIINVT >Mature_479_residues MIHFFRRTKIISTLGPSTDKKSVLKKIIQSGANALRLNFSHGTSIDHINRVKNIREIEKELNCFVSLIGDLQGPKIRISS FKKKKIFLNKGDNFLLDLSIPKYYGNKNSVGINYKNLPNEVNSGDILLLDDGKIQLRVLKKNNRKIFTKVIIGGYLSDNK GLNKLGGGLSASALTKKDEKDIKLAAMLGVDYIAVSFPRSKEDLQKARKLIKKSGSKAKIIAKIERAEAVSSNNVMKDII LESDVIMIARGDLGVEIGDHELIGIQKKLISMTRKLNRIVITATQMMESMIENPFPTRAEVMDIANSVLDGTDAVMLSAE TASGSFPEITVKTMSKICLGAEKVPSAKISKHRLNEKFSDVDETIAMSAMYSANHLKNVSAIIIFLTSRKIALLASRITS GLPIFYISNCVKKLRLSTLYRGVIPIYFNKNNFNNHDKVIIKFLKKKKFLKKNEIIVIIKNDLERNSKITNTCKIINVT
Specific function: Glycolysis; final step. [C]
COG id: COG0469
COG function: function code G; Pyruvate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate kinase family [H]
Homologues:
Organism=Homo sapiens, GI33286418, Length=500, Percent_Identity=34.2, Blast_Score=238, Evalue=9e-63, Organism=Homo sapiens, GI33286422, Length=499, Percent_Identity=33.2665330661323, Blast_Score=238, Evalue=1e-62, Organism=Homo sapiens, GI33286420, Length=499, Percent_Identity=33.2665330661323, Blast_Score=238, Evalue=1e-62, Organism=Homo sapiens, GI32967597, Length=500, Percent_Identity=32.6, Blast_Score=234, Evalue=1e-61, Organism=Homo sapiens, GI10835121, Length=500, Percent_Identity=32.6, Blast_Score=234, Evalue=1e-61, Organism=Homo sapiens, GI310128732, Length=291, Percent_Identity=35.3951890034364, Blast_Score=149, Evalue=7e-36, Organism=Homo sapiens, GI310128730, Length=291, Percent_Identity=35.3951890034364, Blast_Score=149, Evalue=7e-36, Organism=Homo sapiens, GI310128736, Length=237, Percent_Identity=35.0210970464135, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI310128734, Length=237, Percent_Identity=35.0210970464135, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI310128738, Length=216, Percent_Identity=34.2592592592593, Blast_Score=102, Evalue=9e-22, Organism=Escherichia coli, GI1788160, Length=483, Percent_Identity=57.7639751552795, Blast_Score=582, Evalue=1e-167, Organism=Escherichia coli, GI1787965, Length=425, Percent_Identity=35.0588235294118, Blast_Score=248, Evalue=7e-67, Organism=Caenorhabditis elegans, GI17544584, Length=491, Percent_Identity=34.4195519348269, Blast_Score=251, Evalue=4e-67, Organism=Caenorhabditis elegans, GI17506829, Length=497, Percent_Identity=35.2112676056338, Blast_Score=238, Evalue=4e-63, Organism=Caenorhabditis elegans, GI17506831, Length=497, Percent_Identity=35.2112676056338, Blast_Score=238, Evalue=5e-63, Organism=Caenorhabditis elegans, GI71984413, Length=497, Percent_Identity=35.2112676056338, Blast_Score=238, Evalue=6e-63, Organism=Caenorhabditis elegans, GI71984406, Length=497, Percent_Identity=35.2112676056338, Blast_Score=238, Evalue=6e-63, Organism=Saccharomyces cerevisiae, GI6319279, Length=471, Percent_Identity=33.7579617834395, Blast_Score=230, Evalue=4e-61, Organism=Saccharomyces cerevisiae, GI6324923, Length=454, Percent_Identity=31.7180616740088, Blast_Score=211, Evalue=2e-55, Organism=Drosophila melanogaster, GI28571814, Length=497, Percent_Identity=32.7967806841046, Blast_Score=237, Evalue=1e-62, Organism=Drosophila melanogaster, GI24648964, Length=497, Percent_Identity=32.7967806841046, Blast_Score=237, Evalue=1e-62, Organism=Drosophila melanogaster, GI24581235, Length=434, Percent_Identity=32.7188940092166, Blast_Score=216, Evalue=3e-56, Organism=Drosophila melanogaster, GI24648966, Length=422, Percent_Identity=33.175355450237, Blast_Score=209, Evalue=3e-54, Organism=Drosophila melanogaster, GI24646914, Length=276, Percent_Identity=34.7826086956522, Blast_Score=147, Evalue=2e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001697 - InterPro: IPR015813 - InterPro: IPR011037 - InterPro: IPR015794 - InterPro: IPR018209 - InterPro: IPR015793 - InterPro: IPR015795 - InterPro: IPR015806 [H]
Pfam domain/function: PF00224 PK; PF02887 PK_C [H]
EC number: =2.7.1.40 [H]
Molecular weight: Translated: 53457; Mature: 53457
Theoretical pI: Translated: 10.64; Mature: 10.64
Prosite motif: PS00110 PYRUVATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHFFRRTKIISTLGPSTDKKSVLKKIIQSGANALRLNFSHGTSIDHINRVKNIREIEKE CCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH LNCFVSLIGDLQGPKIRISSFKKKKIFLNKGDNFLLDLSIPKYYGNKNSVGINYKNLPNE HHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCEEEEEECHHHCCCCCCCCEEECCCCCC VNSGDILLLDDGKIQLRVLKKNNRKIFTKVIIGGYLSDNKGLNKLGGGLSASALTKKDEK CCCCCEEEEECCCEEEEEEECCCCEEEEEEEEECEECCCCCHHHHCCCCCHHHHCCCCCC DIKLAAMLGVDYIAVSFPRSKEDLQKARKLIKKSGSKAKIIAKIERAEAVSSNNVMKDII CEEEEEHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHCCCCHHHHHH LESDVIMIARGDLGVEIGDHELIGIQKKLISMTRKLNRIVITATQMMESMIENPFPTRAE CCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHCCCCCCHHH VMDIANSVLDGTDAVMLSAETASGSFPEITVKTMSKICLGAEKVPSAKISKHRLNEKFSD HHHHHHHHCCCCCEEEEEEECCCCCCCEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH VDETIAMSAMYSANHLKNVSAIIIFLTSRKIALLASRITSGLPIFYISNCVKKLRLSTLY HHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH RGVIPIYFNKNNFNNHDKVIIKFLKKKKFLKKNEIIVIIKNDLERNSKITNTCKIINVT HCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEC >Mature Secondary Structure MIHFFRRTKIISTLGPSTDKKSVLKKIIQSGANALRLNFSHGTSIDHINRVKNIREIEKE CCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH LNCFVSLIGDLQGPKIRISSFKKKKIFLNKGDNFLLDLSIPKYYGNKNSVGINYKNLPNE HHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCEEEEEECHHHCCCCCCCCEEECCCCCC VNSGDILLLDDGKIQLRVLKKNNRKIFTKVIIGGYLSDNKGLNKLGGGLSASALTKKDEK CCCCCEEEEECCCEEEEEEECCCCEEEEEEEEECEECCCCCHHHHCCCCCHHHHCCCCCC DIKLAAMLGVDYIAVSFPRSKEDLQKARKLIKKSGSKAKIIAKIERAEAVSSNNVMKDII CEEEEEHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHCCCCHHHHHH LESDVIMIARGDLGVEIGDHELIGIQKKLISMTRKLNRIVITATQMMESMIENPFPTRAE CCCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHCCCCCCHHH VMDIANSVLDGTDAVMLSAETASGSFPEITVKTMSKICLGAEKVPSAKISKHRLNEKFSD HHHHHHHHCCCCCEEEEEEECCCCCCCEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH VDETIAMSAMYSANHLKNVSAIIIFLTSRKIALLASRITSGLPIFYISNCVKKLRLSTLY HHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH RGVIPIYFNKNNFNNHDKVIIKFLKKKKFLKKNEIIVIIKNDLERNSKITNTCKIINVT HCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12089438 [H]