| Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
|---|---|
| Accession | NC_008513 |
| Length | 416,380 |
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The map label for this gene is glyS [H]
Identifier: 116515026
GI number: 116515026
Start: 92883
End: 94823
Strand: Reverse
Name: glyS [H]
Synonym: BCc_085
Alternate gene names: 116515026
Gene position: 94823-92883 (Counterclockwise)
Preceding gene: 116515027
Following gene: 116515017
Centisome position: 22.77
GC content: 15.87
Gene sequence:
>1941_bases ATGAATCAAAAAATATTATTAATCGAAATACAAACAGAAGATTTACCTAGTAAAGAATTAAAAAACATAGCAAATTTTTT TTATTATATTTTTAAAAAAAAAATCAAAGAAAATAAAATTCAATACAAAAAAATTTCTTTATTTTTTACCTCTAAAAAAT TAGTATTAAAGGTCTTTTCTTTAAAAAACATAAAAAAAAAAAAAAATCATCTAATTTATATACATAAAAAAAAAACTATT TCTTTAAAAGAAAAAATAAAAAAAATAGTATTTGAAACAATTAAAAAAATACCATTAAAAAGATCTATGTTGTGGGATGA AAAATCTATTCGATTTTCTAGACCCATACGTAATATAATGATTTTACTAAACAAAAAAATCATTAAAGCTAAAATTGAAG GAATTACTTCTAATAGTATTTCTTATGGACATTTTTTAATGTCTCCTAAAAAAATTATTTTTCATCATGCAAATCAATAT ACAAAAAAATTTTTTAAGAAAAAAAAAATTATATTAGATTATCAAGAAAGAAAAAAAAAAATAATAAAACAAATAAAAAA TCTAACAAAAAAACATAATAAAAAAATTTATATAAATAAAAATTTGTTAAAAGAAATAAGTGTATCAATCGAATGGCCTA TTGCTCATATAGGAAAATTTAAAAAAAAATATTTAAATATACCTCAGGAAATATTAATATATATTATTGAAAATAATCAA AAATATTTTTCTATCTTTAATACTAAGAAGAATACAATTACAAATTACTTTATTTTTATTAGTAACATTGAAACCCCAAA TTTTAAAAAAATTATTCAAGAAAATGAACAAGTATTATCTTCTAAACTAAAAAATATAAATTTTTTTTTAAAAAAGGATT TACTTATAAAGTTTTCTAACAGATTAGATTTATTAAAAAATATTTCTTTTCAAAAAAAACTAGGATCTATGTACGAAAAA ACAATACGAATAAAAAAAATCAGTCAATATATTTCAAAAATTCTAAAAGTAAAAAAAAAATCAATTAAACGTGCTGCTAT TTTATCAAAATGTGATTTAACAACAAATATAATACGAAGTACAACGCTTCAAGGTATTATTGGTATGTATTATGCTTTAT ATAATCATGAAGATAGAGAAATAGCTTTAGCTATAAAAGAACATTATTTACCTAATTTTTCTCAATCTAATTTACCTACT CAATTAATATCTTGTATATTAAGTATTTCTGATAAAATCGATACTATAACTGGAATTTTTAGTATTAGTAAAGTACCTAA AAATAATAAAGATCCATTTGCATTACGTAGATCTACTATAGGTATTATTAAAATAATTATTAAAAAAAAAATATATATTG ATATTATTAAATTAATTAAATATTCAATAAATTTATATACACATATAAAAAATAAAATATTAATTCAAAAATTAATTTTA AATTTTATATATTCAAAATTTCAATCATTATATTTAAAAAAAAAATATAATAAAAAAATTATTTCTTCTGTTCTTTCACT GAAATTAAATGATTTATTAGATATTAATAATCGCATACACGCATTATATAATTTTCAAAAAATTAATAATATGAAAAATA TACTTAATATTTATAAAAGAATAACGAATATATTAAAACAAAAAAAAGAAAAAAAAACAAAAATAAACATTTTTTATTCA AATCCTATATATAAATTTTCAATATATGAAAAAAAAATAATTATATTAATAAAATCTATTATAGAAAATAATATAAAAAA AGAAAAAAATGATTATTTTAATTTATTGAAAAAAATTGAAGAATTATGTACACCAATAAAAGAATTTTTCCAAAATATAT TAATAAATGATAAAAATACTGAAAAACGTTTGTATCGTATATCTATATTACAAGAAATCAAAAAAATATTTTTATATATA ACAAACTTTTCTTATTTATAA
Upstream 100 bases:
>100_bases GTTATCTACTACTGAACGAACAAATTATATTCTATGTATACGGAAAATAATCAAAAAAATTGCTGAAAAATATATTAATA TAAACGTTAAAGAGTAAAAA
Downstream 100 bases:
>100_bases ATTAATAAAATAAATATTATAAATACTTTTATTTTTAAATAATTTTAAATATTTTTAATTAAATTAAATATTTTCTATAA ATATTAAAATCTTTATAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS [H]
Number of amino acids: Translated: 646; Mature: 646
Protein sequence:
>646_residues MNQKILLIEIQTEDLPSKELKNIANFFYYIFKKKIKENKIQYKKISLFFTSKKLVLKVFSLKNIKKKKNHLIYIHKKKTI SLKEKIKKIVFETIKKIPLKRSMLWDEKSIRFSRPIRNIMILLNKKIIKAKIEGITSNSISYGHFLMSPKKIIFHHANQY TKKFFKKKKIILDYQERKKKIIKQIKNLTKKHNKKIYINKNLLKEISVSIEWPIAHIGKFKKKYLNIPQEILIYIIENNQ KYFSIFNTKKNTITNYFIFISNIETPNFKKIIQENEQVLSSKLKNINFFLKKDLLIKFSNRLDLLKNISFQKKLGSMYEK TIRIKKISQYISKILKVKKKSIKRAAILSKCDLTTNIIRSTTLQGIIGMYYALYNHEDREIALAIKEHYLPNFSQSNLPT QLISCILSISDKIDTITGIFSISKVPKNNKDPFALRRSTIGIIKIIIKKKIYIDIIKLIKYSINLYTHIKNKILIQKLIL NFIYSKFQSLYLKKKYNKKIISSVLSLKLNDLLDINNRIHALYNFQKINNMKNILNIYKRITNILKQKKEKKTKINIFYS NPIYKFSIYEKKIIILIKSIIENNIKKEKNDYFNLLKKIEELCTPIKEFFQNILINDKNTEKRLYRISILQEIKKIFLYI TNFSYL
Sequences:
>Translated_646_residues MNQKILLIEIQTEDLPSKELKNIANFFYYIFKKKIKENKIQYKKISLFFTSKKLVLKVFSLKNIKKKKNHLIYIHKKKTI SLKEKIKKIVFETIKKIPLKRSMLWDEKSIRFSRPIRNIMILLNKKIIKAKIEGITSNSISYGHFLMSPKKIIFHHANQY TKKFFKKKKIILDYQERKKKIIKQIKNLTKKHNKKIYINKNLLKEISVSIEWPIAHIGKFKKKYLNIPQEILIYIIENNQ KYFSIFNTKKNTITNYFIFISNIETPNFKKIIQENEQVLSSKLKNINFFLKKDLLIKFSNRLDLLKNISFQKKLGSMYEK TIRIKKISQYISKILKVKKKSIKRAAILSKCDLTTNIIRSTTLQGIIGMYYALYNHEDREIALAIKEHYLPNFSQSNLPT QLISCILSISDKIDTITGIFSISKVPKNNKDPFALRRSTIGIIKIIIKKKIYIDIIKLIKYSINLYTHIKNKILIQKLIL NFIYSKFQSLYLKKKYNKKIISSVLSLKLNDLLDINNRIHALYNFQKINNMKNILNIYKRITNILKQKKEKKTKINIFYS NPIYKFSIYEKKIIILIKSIIENNIKKEKNDYFNLLKKIEELCTPIKEFFQNILINDKNTEKRLYRISILQEIKKIFLYI TNFSYL >Mature_646_residues MNQKILLIEIQTEDLPSKELKNIANFFYYIFKKKIKENKIQYKKISLFFTSKKLVLKVFSLKNIKKKKNHLIYIHKKKTI SLKEKIKKIVFETIKKIPLKRSMLWDEKSIRFSRPIRNIMILLNKKIIKAKIEGITSNSISYGHFLMSPKKIIFHHANQY TKKFFKKKKIILDYQERKKKIIKQIKNLTKKHNKKIYINKNLLKEISVSIEWPIAHIGKFKKKYLNIPQEILIYIIENNQ KYFSIFNTKKNTITNYFIFISNIETPNFKKIIQENEQVLSSKLKNINFFLKKDLLIKFSNRLDLLKNISFQKKLGSMYEK TIRIKKISQYISKILKVKKKSIKRAAILSKCDLTTNIIRSTTLQGIIGMYYALYNHEDREIALAIKEHYLPNFSQSNLPT QLISCILSISDKIDTITGIFSISKVPKNNKDPFALRRSTIGIIKIIIKKKIYIDIIKLIKYSINLYTHIKNKILIQKLIL NFIYSKFQSLYLKKKYNKKIISSVLSLKLNDLLDINNRIHALYNFQKINNMKNILNIYKRITNILKQKKEKKTKINIFYS NPIYKFSIYEKKIIILIKSIIENNIKKEKNDYFNLLKKIEELCTPIKEFFQNILINDKNTEKRLYRISILQEIKKIFLYI TNFSYL
Specific function: Unknown
COG id: COG0751
COG function: function code J; Glycyl-tRNA synthetase, beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1789982, Length=697, Percent_Identity=28.4074605451937, Blast_Score=385, Evalue=1e-108,
Paralogues:
None
Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008909 - InterPro: IPR006194 - InterPro: IPR015944 - InterPro: IPR002311 [H]
Pfam domain/function: PF05746 DALR_1; PF02092 tRNA_synt_2f [H]
EC number: =6.1.1.14 [H]
Molecular weight: Translated: 77142; Mature: 77142
Theoretical pI: Translated: 10.82; Mature: 10.82
Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQKILLIEIQTEDLPSKELKNIANFFYYIFKKKIKENKIQYKKISLFFTSKKLVLKVFS CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECHHHHHHHHH LKNIKKKKNHLIYIHKKKTISLKEKIKKIVFETIKKIPLKRSMLWDEKSIRFSRPIRNIM HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHH ILLNKKIIKAKIEGITSNSISYGHFLMSPKKIIFHHANQYTKKFFKKKKIILDYQERKKK HHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHEECHHHHHHH IIKQIKNLTKKHNKKIYINKNLLKEISVSIEWPIAHIGKFKKKYLNIPQEILIYIIENNQ HHHHHHHHHHHCCCEEEEEHHHHHHHHCEEECCHHHHHHHHHHHHCCCHHHEEEEEECCC KYFSIFNTKKNTITNYFIFISNIETPNFKKIIQENEQVLSSKLKNINFFLKKDLLIKFSN EEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH RLDLLKNISFQKKLGSMYEKTIRIKKISQYISKILKVKKKSIKRAAILSKCDLTTNIIRS HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH TTLQGIIGMYYALYNHEDREIALAIKEHYLPNFSQSNLPTQLISCILSISDKIDTITGIF HHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SISKVPKNNKDPFALRRSTIGIIKIIIKKKIYIDIIKLIKYSINLYTHIKNKILIQKLIL HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NFIYSKFQSLYLKKKYNKKIISSVLSLKLNDLLDINNRIHALYNFQKINNMKNILNIYKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH ITNILKQKKEKKTKINIFYSNPIYKFSIYEKKIIILIKSIIENNIKKEKNDYFNLLKKIE HHHHHHHHHCCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELCTPIKEFFQNILINDKNTEKRLYRISILQEIKKIFLYITNFSYL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNQKILLIEIQTEDLPSKELKNIANFFYYIFKKKIKENKIQYKKISLFFTSKKLVLKVFS CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECHHHHHHHHH LKNIKKKKNHLIYIHKKKTISLKEKIKKIVFETIKKIPLKRSMLWDEKSIRFSRPIRNIM HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHH ILLNKKIIKAKIEGITSNSISYGHFLMSPKKIIFHHANQYTKKFFKKKKIILDYQERKKK HHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHEECHHHHHHH IIKQIKNLTKKHNKKIYINKNLLKEISVSIEWPIAHIGKFKKKYLNIPQEILIYIIENNQ HHHHHHHHHHHCCCEEEEEHHHHHHHHCEEECCHHHHHHHHHHHHCCCHHHEEEEEECCC KYFSIFNTKKNTITNYFIFISNIETPNFKKIIQENEQVLSSKLKNINFFLKKDLLIKFSN EEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH RLDLLKNISFQKKLGSMYEKTIRIKKISQYISKILKVKKKSIKRAAILSKCDLTTNIIRS HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH TTLQGIIGMYYALYNHEDREIALAIKEHYLPNFSQSNLPTQLISCILSISDKIDTITGIF HHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH SISKVPKNNKDPFALRRSTIGIIKIIIKKKIYIDIIKLIKYSINLYTHIKNKILIQKLIL HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NFIYSKFQSLYLKKKYNKKIISSVLSLKLNDLLDINNRIHALYNFQKINNMKNILNIYKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH ITNILKQKKEKKTKINIFYSNPIYKFSIYEKKIIILIKSIIENNIKKEKNDYFNLLKKIE HHHHHHHHHCCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELCTPIKEFFQNILINDKNTEKRLYRISILQEIKKIFLYITNFSYL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12089438 [H]