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The map label for this gene is yfbE [C]

Identifier: 116327904

GI number: 116327904

Start: 1404047

End: 1405252

Strand: Direct

Name: yfbE [C]

Synonym: LBL_1190

Alternate gene names: 116327904

Gene position: 1404047-1405252 (Clockwise)

Preceding gene: 116327903

Following gene: 116327905

Centisome position: 38.85

GC content: 37.48

Gene sequence:

>1206_bases
ATGTCTAAACTTGCCATTCACGGTGGGGAGCCAGTTCGTAAATCTTTCTTAGTCTATGGGGCGCCTGATATTGGAGATGA
AGAAATTCAAGCGGTCGTCAATTGTATAAAAACTGGCTGGCTCAGTACAGGGCCGAATGTACAAAAATTTGAGACTGATA
TTAAGAACTACACTGGTGCAAAACATGCTGTAGCTGCAAATAGTTGTACTGCTTTGCTTCATCTTAGTTTAATTGCTCAT
AATATAGGTCCGGGTGATGAAGTAATCACTACCCCTATGACCTTTGGTGCGACAATAAATGTGATAGAACATGTAGGTGC
TAAACCGATTTTGGTAGACTTATTGCCTAAAAGTTTTCATATCGATCCTCAATCTATAAAATCCAAAATTACACCTAAGA
CTAGAGCTATCATGCCGGTTCATTATGCAGGTTCTCCCTGTCAAATGGATGAAATTAACGCGATTGCAAAAGAATATAAC
TTAGTTGTAATTGAAGATGCGGCGCATGCAATTGGTACAAAGTATAAAGGGACTTTGATCGGAGATGGCCAAAATCTTAC
TTCATTTAGTTTGTATGTAACCAAAAATATTGCTGCAGGGGAAGGAGGAGTCTTAACTACGAATGATGATGACCTTGCGG
AGAAAATTCGTATTTACGGACTCCATGGAATGAGTAGAGGTGCTTGGCAACGTTATTCAAAAAATTCGCAAATTCATTAT
GATATAGTAGTTCCGGGATATAAATATAATATGCCTGATATGAATGCTGCAATGGCCATTGAACAGTTAAAAAAATTGGA
AATTTTTACTAAAAAAAGAAAAGCAATCGCAGAAGCTTATTTTGAGCATCTGGCTGACGAAAATGGTCTCGAATTGCCTC
ATGCGTTGATTGAACAAAATGAGGGTGATCTATGCACTTGGCATATTTTCCCAATCTTAATTAACCCGGAAGTTTTAAAA
GGAAATAGAGAAGAAATCATGGCCGCCTTGATCCAAGAAAATATTGGTGTAGCGACCCATTATCGAGCTATCTATGAACA
ACAGTTTTATAAAGAGAAGTATGGCCTCGTCCCAAGTGATTTTCCTAATTGTGAAATGATCTCCAAGAGGATCTTTTCGA
TTCCATTGTCTACAAGTATGTCGACACAGGATATTGAAGATGTCGTAAGTGGAATTAAAAAAGTATTCGGATATTTTAAA
AAATAG

Upstream 100 bases:

>100_bases
CCTCAGTTATATGGTGATTTTGTCGGTAATGTTAGTATATTAGATCTTTTATTTAACTGCGGTTTTGAAAGCCGTAAATA
TATATTTAAGGAATAAACAA

Downstream 100 bases:

>100_bases
AGATGATTCAAAAAGCGAATTATAAACAGATTTTATTAGAATTTTTCTACCTTGTTCAAAAATATCCGATCAGCTCGTTT
ATCTTTTTATTGGGGATATT

Product: pyridoxal-phosphate-dependent aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MSKLAIHGGEPVRKSFLVYGAPDIGDEEIQAVVNCIKTGWLSTGPNVQKFETDIKNYTGAKHAVAANSCTALLHLSLIAH
NIGPGDEVITTPMTFGATINVIEHVGAKPILVDLLPKSFHIDPQSIKSKITPKTRAIMPVHYAGSPCQMDEINAIAKEYN
LVVIEDAAHAIGTKYKGTLIGDGQNLTSFSLYVTKNIAAGEGGVLTTNDDDLAEKIRIYGLHGMSRGAWQRYSKNSQIHY
DIVVPGYKYNMPDMNAAMAIEQLKKLEIFTKKRKAIAEAYFEHLADENGLELPHALIEQNEGDLCTWHIFPILINPEVLK
GNREEIMAALIQENIGVATHYRAIYEQQFYKEKYGLVPSDFPNCEMISKRIFSIPLSTSMSTQDIEDVVSGIKKVFGYFK
K

Sequences:

>Translated_401_residues
MSKLAIHGGEPVRKSFLVYGAPDIGDEEIQAVVNCIKTGWLSTGPNVQKFETDIKNYTGAKHAVAANSCTALLHLSLIAH
NIGPGDEVITTPMTFGATINVIEHVGAKPILVDLLPKSFHIDPQSIKSKITPKTRAIMPVHYAGSPCQMDEINAIAKEYN
LVVIEDAAHAIGTKYKGTLIGDGQNLTSFSLYVTKNIAAGEGGVLTTNDDDLAEKIRIYGLHGMSRGAWQRYSKNSQIHY
DIVVPGYKYNMPDMNAAMAIEQLKKLEIFTKKRKAIAEAYFEHLADENGLELPHALIEQNEGDLCTWHIFPILINPEVLK
GNREEIMAALIQENIGVATHYRAIYEQQFYKEKYGLVPSDFPNCEMISKRIFSIPLSTSMSTQDIEDVVSGIKKVFGYFK
K
>Mature_400_residues
SKLAIHGGEPVRKSFLVYGAPDIGDEEIQAVVNCIKTGWLSTGPNVQKFETDIKNYTGAKHAVAANSCTALLHLSLIAHN
IGPGDEVITTPMTFGATINVIEHVGAKPILVDLLPKSFHIDPQSIKSKITPKTRAIMPVHYAGSPCQMDEINAIAKEYNL
VVIEDAAHAIGTKYKGTLIGDGQNLTSFSLYVTKNIAAGEGGVLTTNDDDLAEKIRIYGLHGMSRGAWQRYSKNSQIHYD
IVVPGYKYNMPDMNAAMAIEQLKKLEIFTKKRKAIAEAYFEHLADENGLELPHALIEQNEGDLCTWHIFPILINPEVLKG
NREEIMAALIQENIGVATHYRAIYEQQFYKEKYGLVPSDFPNCEMISKRIFSIPLSTSMSTQDIEDVVSGIKKVFGYFKK

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=384, Percent_Identity=39.0625, Blast_Score=288, Evalue=4e-79,
Organism=Escherichia coli, GI2367285, Length=383, Percent_Identity=30.2872062663185, Blast_Score=156, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 44371; Mature: 44239

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLAIHGGEPVRKSFLVYGAPDIGDEEIQAVVNCIKTGWLSTGPNVQKFETDIKNYTGA
CCCEEECCCCHHHHCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
KHAVAANSCTALLHLSLIAHNIGPGDEVITTPMTFGATINVIEHVGAKPILVDLLPKSFH
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEECCHHHHHHHHCCCCCEEEEECCCCCC
IDPQSIKSKITPKTRAIMPVHYAGSPCQMDEINAIAKEYNLVVIEDAAHAIGTKYKGTLI
CCHHHHHHHCCCCHHEEEEEEECCCCCCHHHHHHHHHHCCEEEECCCHHHHCCCCCCEEE
GDGQNLTSFSLYVTKNIAAGEGGVLTTNDDDLAEKIRIYGLHGMSRGAWQRYSKNSQIHY
ECCCCCEEEEEEEEECCCCCCCCEEECCCHHHHHHEEEEEECCCCHHHHHHHCCCCCEEE
DIVVPGYKYNMPDMNAAMAIEQLKKLEIFTKKRKAIAEAYFEHLADENGLELPHALIEQN
EEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCC
EGDLCTWHIFPILINPEVLKGNREEIMAALIQENIGVATHYRAIYEQQFYKEKYGLVPSD
CCCEEEEEEEEEEECHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
FPNCEMISKRIFSIPLSTSMSTQDIEDVVSGIKKVFGYFKK
CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKLAIHGGEPVRKSFLVYGAPDIGDEEIQAVVNCIKTGWLSTGPNVQKFETDIKNYTGA
CCEEECCCCHHHHCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
KHAVAANSCTALLHLSLIAHNIGPGDEVITTPMTFGATINVIEHVGAKPILVDLLPKSFH
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEECCHHHHHHHHCCCCCEEEEECCCCCC
IDPQSIKSKITPKTRAIMPVHYAGSPCQMDEINAIAKEYNLVVIEDAAHAIGTKYKGTLI
CCHHHHHHHCCCCHHEEEEEEECCCCCCHHHHHHHHHHCCEEEECCCHHHHCCCCCCEEE
GDGQNLTSFSLYVTKNIAAGEGGVLTTNDDDLAEKIRIYGLHGMSRGAWQRYSKNSQIHY
ECCCCCEEEEEEEEECCCCCCCCEEECCCHHHHHHEEEEEECCCCHHHHHHHCCCCCEEE
DIVVPGYKYNMPDMNAAMAIEQLKKLEIFTKKRKAIAEAYFEHLADENGLELPHALIEQN
EEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCC
EGDLCTWHIFPILINPEVLKGNREEIMAALIQENIGVATHYRAIYEQQFYKEKYGLVPSD
CCCEEEEEEEEEEECHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
FPNCEMISKRIFSIPLSTSMSTQDIEDVVSGIKKVFGYFKK
CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]