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The map label for this gene is 116327697

Identifier: 116327697

GI number: 116327697

Start: 1091302

End: 1092183

Strand: Direct

Name: 116327697

Synonym: LBL_0943

Alternate gene names: NA

Gene position: 1091302-1092183 (Clockwise)

Preceding gene: 116327696

Following gene: 116327702

Centisome position: 30.19

GC content: 39.57

Gene sequence:

>882_bases
ATGTATTTTGTAATTGATTTTTTGAAAAGTATCAACCCGTTCCTTCTTTTGAAGATGACGGATCGAAGTCTTTCCGAAGA
GTTGATTTTGATCGCCTATTTCATTCTTTTTTTGGTCCTTTCTTATAAAATCACCATTGTAGTTTTCGATTTTTTCAAAC
CTACCGTGGACGTAAAATCCCGCTACAACCGTAGAAAAATGGCCCGAATGTCCTTTGTAGTTTTGGGTCTAATTATTCTT
TTGCCGGTTGTCTTTTCCGGTCTTTCGTATCTTCCAACCGTGATTGGATTGGCCGGCGCCGGTATCGTCATCTCTTTGAA
AGACATCACCCTTAATTTTGTAGGCTGGTTTTTTATTCACGGGAGCAACGGTTTTGAAGTGGGGGATCGTATCGAGATCG
ATGGAGTTCGGGGGGATGTAATTAATATTGGAATGAATCGTTTTACACTGATGGAAATTTCGTCCGATCCTAAGTCCGAT
CAATCAACGAATCGCCTTGTTCATTTTCCGAATCATTTTGTGATTCTACGTCAAGTGGTCGTTGTGAAAGACAAAATGGA
TTACGTCTGGGACGAGATGAGAATTAAAATTCCGTACGATTCTGATTTTGAAAAAGCCGAAGAGCTTCTGAACGGTATCA
TACGTAACAACGCGATTATCGATCAGAGTGAAATTAATTACACTCTCCAAGAACTTTCTAAAAATTATCTTGTTCGCCTT
GGTAAAACGTCTCCGATCGTTTATCTTTCTTTGGAAGACGGAGGGATTCTTTTTTCTCTTCGCTACTTGACTCACATAAG
AGGAAGAAGGGATATGAAGACGAAAATTTCCCACCAGATTCTGAAGGAGTTTAAGCAGTTTCCTGGAATTCGGATTTTGT
AG

Upstream 100 bases:

>100_bases
TTCGTTTTGTCCTTTTGAAAAAGCCGGGTCTTCCCGTTTTCGATGTTCCCGTGGAATCCAGAGACATCATATTAACAATT
CGTAAACAAAAAGGTCTTTG

Downstream 100 bases:

>100_bases
TTTAAAAGCCTTGTGCGAGTCTTAAAATGCCGCAACGAGAATTGTTTCGATTTCATTCTTGGGAAGTTCTCTCGGAAGGG
AATCCAAAAACGGAAACGAA

Product: mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MYFVIDFLKSINPFLLLKMTDRSLSEELILIAYFILFLVLSYKITIVVFDFFKPTVDVKSRYNRRKMARMSFVVLGLIIL
LPVVFSGLSYLPTVIGLAGAGIVISLKDITLNFVGWFFIHGSNGFEVGDRIEIDGVRGDVINIGMNRFTLMEISSDPKSD
QSTNRLVHFPNHFVILRQVVVVKDKMDYVWDEMRIKIPYDSDFEKAEELLNGIIRNNAIIDQSEINYTLQELSKNYLVRL
GKTSPIVYLSLEDGGILFSLRYLTHIRGRRDMKTKISHQILKEFKQFPGIRIL

Sequences:

>Translated_293_residues
MYFVIDFLKSINPFLLLKMTDRSLSEELILIAYFILFLVLSYKITIVVFDFFKPTVDVKSRYNRRKMARMSFVVLGLIIL
LPVVFSGLSYLPTVIGLAGAGIVISLKDITLNFVGWFFIHGSNGFEVGDRIEIDGVRGDVINIGMNRFTLMEISSDPKSD
QSTNRLVHFPNHFVILRQVVVVKDKMDYVWDEMRIKIPYDSDFEKAEELLNGIIRNNAIIDQSEINYTLQELSKNYLVRL
GKTSPIVYLSLEDGGILFSLRYLTHIRGRRDMKTKISHQILKEFKQFPGIRIL
>Mature_293_residues
MYFVIDFLKSINPFLLLKMTDRSLSEELILIAYFILFLVLSYKITIVVFDFFKPTVDVKSRYNRRKMARMSFVVLGLIIL
LPVVFSGLSYLPTVIGLAGAGIVISLKDITLNFVGWFFIHGSNGFEVGDRIEIDGVRGDVINIGMNRFTLMEISSDPKSD
QSTNRLVHFPNHFVILRQVVVVKDKMDYVWDEMRIKIPYDSDFEKAEELLNGIIRNNAIIDQSEINYTLQELSKNYLVRL
GKTSPIVYLSLEDGGILFSLRYLTHIRGRRDMKTKISHQILKEFKQFPGIRIL

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 33818; Mature: 33818

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFVIDFLKSINPFLLLKMTDRSLSEELILIAYFILFLVLSYKITIVVFDFFKPTVDVKS
CEEHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHH
RYNRRKMARMSFVVLGLIILLPVVFSGLSYLPTVIGLAGAGIVISLKDITLNFVGWFFIH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHEEEEEEEEEEE
GSNGFEVGDRIEIDGVRGDVINIGMNRFTLMEISSDPKSDQSTNRLVHFPNHFVILRQVV
CCCCCCCCCEEEECCCCCCEEEECCCEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHH
VVKDKMDYVWDEMRIKIPYDSDFEKAEELLNGIIRNNAIIDQSEINYTLQELSKNYLVRL
HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCHHHEEEE
GKTSPIVYLSLEDGGILFSLRYLTHIRGRRDMKTKISHQILKEFKQFPGIRIL
CCCCCEEEEEECCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MYFVIDFLKSINPFLLLKMTDRSLSEELILIAYFILFLVLSYKITIVVFDFFKPTVDVKS
CEEHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHH
RYNRRKMARMSFVVLGLIILLPVVFSGLSYLPTVIGLAGAGIVISLKDITLNFVGWFFIH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHEEEEEEEEEEE
GSNGFEVGDRIEIDGVRGDVINIGMNRFTLMEISSDPKSDQSTNRLVHFPNHFVILRQVV
CCCCCCCCCEEEECCCCCCEEEECCCEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHH
VVKDKMDYVWDEMRIKIPYDSDFEKAEELLNGIIRNNAIIDQSEINYTLQELSKNYLVRL
HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCHHHEEEE
GKTSPIVYLSLEDGGILFSLRYLTHIRGRRDMKTKISHQILKEFKQFPGIRIL
CCCCCEEEEEECCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]