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The map label for this gene is ydiF [H]

Identifier: 116327458

GI number: 116327458

Start: 754720

End: 756216

Strand: Direct

Name: ydiF [H]

Synonym: LBL_0675

Alternate gene names: 116327458

Gene position: 754720-756216 (Clockwise)

Preceding gene: 116327456

Following gene: 116327465

Centisome position: 20.88

GC content: 42.02

Gene sequence:

>1497_bases
ATGATTAAAATATCCGGCCTAAATAAGGCTTTTACAACCAAAGTCCTTTTTGACGACTTAAACTTGAGCATCAATCGAGG
AGAAAAGATCGGCCTGGTCGGTCGAAATGGTCATGGAAAGTCTACACTCTTTCAGATGATTCTTGGAAACGTTGAACCTG
ACTCAGGTATAATCTCGGTTCCTAAAGGTTATAAAATCGGTCATCTTCAACAGCATCTTCATTTTACCAAGTCTACGGTT
TTAGAAGAATGTGCTCTCGGTCTTCCTGAAGGGGAAGAATACGAAACCTGGCAGGTTGAAAAAATTCTTTCCGGCTTGGG
TTTTTCCGAACGGGACATGGAAAGGAATCCGGACGAATTTTCCGGAGGTTATCAGATCCGGATGAATCTTGCAAAACTTC
TCGTTTCCTCTCCCGATATGCTGATGCTTGACGAACCGAATAACTATCTCGATATTGTCACGATTCGTTGGCTTGAAGAA
TTTTTGCGGGAATGGGAAGGCGAAATCATATTAGTGACTCATGATAGAGGTTTTATGGACGCGGTAGTCACTCATACGAT
TGCGATTCATCGAACTAAAGCGATCAAGGTCCAAGGTGATACGGATAAACTTTACAATCAGATCAATCAATCCGAAGAAA
TTTATGAGAAGACCCGTTTGAACGAAGCAAAAAAGCGTAAGCAAGAGGAGGTATTTATCGCAAAATTTAAAGCGAAAGCG
AGTTTCGCTAGTCGAGCTCAGTCCAGGGTCAAAAAATTAGAAAAACAAGGCGAGATGAAGGCTCTGGAAAAAATTCAGGA
TTTGGAGTTATATTTTAATAGCGCTCCTTTTGCCGCGAGTCAGATGTTGTCCGTGGAAAATCTTTGTTTTTCGTATGACG
GTAGGGAACCGTATCTCATCGAAAATTTTTCCATCGGTGTGGGAAATAAAGAAAGAATTTGTATCATCGGTAAGAACGGA
AAAGGAAAATCCACTCTTCTTAAAATTCTTGCGGGGGAGCTTGAGCCTTCCCAGGGAACGATCAAAAAACATCCGGCTTT
GAAGGAAGGTTATTTCGGTCAGACAAACAAACTCAATCTCAATGAAAATTCGACTGTGGTCGAGGAGATCATGATTTCCG
ATCAGTCTTGTACGGAATGGAAGGCTAGAACGATTGCGGGCGGTCTGATGTTTTCAGACGATCAAGCTCTTAAAAAAATC
AAAGTCCTTTCCGGCGGTGAAAAAAGTAGAGTACTTCTCGGAAAAATTCTTGTGACTCCTTGCCATCTTCTTTACCTCGA
CGAACCGACGAATCACTTGGATATGCAGTCTTGCGATTCTTTGATCGAAGCGATTGATGAGTTTGAGGGCTCCGTTATCA
TGGTTACCCACGATGAACTTCATTTGCGTGCCGTTGCGACAAAGTTGGTCGTATTCGATAATGATACGATTCGAATTTTC
AACGGTCCCTATGACGACTTTCTAAACGAAATGGGTTGGTCGGACGAAATTTATTAG

Upstream 100 bases:

>100_bases
GAGGCAATCTTTGAACATCAGGCGGTGATCGTATTAATTTTTAAGTGAAATATAAACCTTTTTTGAAAACCTGGTTTTGG
AAACTTAGAGCACATCAATT

Downstream 100 bases:

>100_bases
TAAATTTGAATATTGTGTTTTTTTAAACGTCTTTCGCTTATTATAAAAGCCCGATTTTGAGATTTTAAAATAAGAACTTG
TCCCAAAACCTTAAAAAAAT

Product: ATP-binding protein of an ABC transporter complex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MIKISGLNKAFTTKVLFDDLNLSINRGEKIGLVGRNGHGKSTLFQMILGNVEPDSGIISVPKGYKIGHLQQHLHFTKSTV
LEECALGLPEGEEYETWQVEKILSGLGFSERDMERNPDEFSGGYQIRMNLAKLLVSSPDMLMLDEPNNYLDIVTIRWLEE
FLREWEGEIILVTHDRGFMDAVVTHTIAIHRTKAIKVQGDTDKLYNQINQSEEIYEKTRLNEAKKRKQEEVFIAKFKAKA
SFASRAQSRVKKLEKQGEMKALEKIQDLELYFNSAPFAASQMLSVENLCFSYDGREPYLIENFSIGVGNKERICIIGKNG
KGKSTLLKILAGELEPSQGTIKKHPALKEGYFGQTNKLNLNENSTVVEEIMISDQSCTEWKARTIAGGLMFSDDQALKKI
KVLSGGEKSRVLLGKILVTPCHLLYLDEPTNHLDMQSCDSLIEAIDEFEGSVIMVTHDELHLRAVATKLVVFDNDTIRIF
NGPYDDFLNEMGWSDEIY

Sequences:

>Translated_498_residues
MIKISGLNKAFTTKVLFDDLNLSINRGEKIGLVGRNGHGKSTLFQMILGNVEPDSGIISVPKGYKIGHLQQHLHFTKSTV
LEECALGLPEGEEYETWQVEKILSGLGFSERDMERNPDEFSGGYQIRMNLAKLLVSSPDMLMLDEPNNYLDIVTIRWLEE
FLREWEGEIILVTHDRGFMDAVVTHTIAIHRTKAIKVQGDTDKLYNQINQSEEIYEKTRLNEAKKRKQEEVFIAKFKAKA
SFASRAQSRVKKLEKQGEMKALEKIQDLELYFNSAPFAASQMLSVENLCFSYDGREPYLIENFSIGVGNKERICIIGKNG
KGKSTLLKILAGELEPSQGTIKKHPALKEGYFGQTNKLNLNENSTVVEEIMISDQSCTEWKARTIAGGLMFSDDQALKKI
KVLSGGEKSRVLLGKILVTPCHLLYLDEPTNHLDMQSCDSLIEAIDEFEGSVIMVTHDELHLRAVATKLVVFDNDTIRIF
NGPYDDFLNEMGWSDEIY
>Mature_498_residues
MIKISGLNKAFTTKVLFDDLNLSINRGEKIGLVGRNGHGKSTLFQMILGNVEPDSGIISVPKGYKIGHLQQHLHFTKSTV
LEECALGLPEGEEYETWQVEKILSGLGFSERDMERNPDEFSGGYQIRMNLAKLLVSSPDMLMLDEPNNYLDIVTIRWLEE
FLREWEGEIILVTHDRGFMDAVVTHTIAIHRTKAIKVQGDTDKLYNQINQSEEIYEKTRLNEAKKRKQEEVFIAKFKAKA
SFASRAQSRVKKLEKQGEMKALEKIQDLELYFNSAPFAASQMLSVENLCFSYDGREPYLIENFSIGVGNKERICIIGKNG
KGKSTLLKILAGELEPSQGTIKKHPALKEGYFGQTNKLNLNENSTVVEEIMISDQSCTEWKARTIAGGLMFSDDQALKKI
KVLSGGEKSRVLLGKILVTPCHLLYLDEPTNHLDMQSCDSLIEAIDEFEGSVIMVTHDELHLRAVATKLVVFDNDTIRIF
NGPYDDFLNEMGWSDEIY

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=529, Percent_Identity=32.1361058601134, Blast_Score=269, Evalue=4e-72,
Organism=Homo sapiens, GI27881506, Length=528, Percent_Identity=32.1969696969697, Blast_Score=220, Evalue=3e-57,
Organism=Homo sapiens, GI10947137, Length=528, Percent_Identity=32.1969696969697, Blast_Score=220, Evalue=3e-57,
Organism=Homo sapiens, GI10947135, Length=538, Percent_Identity=28.8104089219331, Blast_Score=192, Evalue=6e-49,
Organism=Homo sapiens, GI69354671, Length=538, Percent_Identity=28.8104089219331, Blast_Score=192, Evalue=8e-49,
Organism=Escherichia coli, GI1789751, Length=525, Percent_Identity=31.8095238095238, Blast_Score=274, Evalue=9e-75,
Organism=Escherichia coli, GI1787041, Length=534, Percent_Identity=32.5842696629214, Blast_Score=266, Evalue=2e-72,
Organism=Escherichia coli, GI1787182, Length=532, Percent_Identity=29.6992481203008, Blast_Score=214, Evalue=8e-57,
Organism=Escherichia coli, GI2367384, Length=515, Percent_Identity=28.7378640776699, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1788165, Length=206, Percent_Identity=32.0388349514563, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI87081791, Length=228, Percent_Identity=28.0701754385965, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787370, Length=223, Percent_Identity=26.9058295964126, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788450, Length=201, Percent_Identity=30.8457711442786, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788761, Length=196, Percent_Identity=30.6122448979592, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081834, Length=204, Percent_Identity=30.3921568627451, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081709, Length=227, Percent_Identity=25.5506607929515, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789890, Length=216, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787758, Length=190, Percent_Identity=25.7894736842105, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788225, Length=236, Percent_Identity=25.4237288135593, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=28.7037037037037, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1786253, Length=203, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787112, Length=233, Percent_Identity=28.755364806867, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786398, Length=210, Percent_Identity=29.0476190476191, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789672, Length=230, Percent_Identity=24.3478260869565, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788644, Length=146, Percent_Identity=32.8767123287671, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789593, Length=213, Percent_Identity=27.2300469483568, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787164, Length=184, Percent_Identity=27.1739130434783, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790467, Length=192, Percent_Identity=29.1666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=530, Percent_Identity=29.811320754717, Blast_Score=245, Evalue=4e-65,
Organism=Caenorhabditis elegans, GI17559834, Length=552, Percent_Identity=31.1594202898551, Blast_Score=235, Evalue=3e-62,
Organism=Caenorhabditis elegans, GI17555318, Length=514, Percent_Identity=29.9610894941634, Blast_Score=217, Evalue=1e-56,
Organism=Saccharomyces cerevisiae, GI6321121, Length=529, Percent_Identity=29.6786389413989, Blast_Score=241, Evalue=1e-64,
Organism=Saccharomyces cerevisiae, GI6320874, Length=530, Percent_Identity=28.8679245283019, Blast_Score=215, Evalue=1e-56,
Organism=Saccharomyces cerevisiae, GI6325030, Length=359, Percent_Identity=27.8551532033426, Blast_Score=140, Evalue=5e-34,
Organism=Saccharomyces cerevisiae, GI6324314, Length=353, Percent_Identity=26.3456090651558, Blast_Score=117, Evalue=5e-27,
Organism=Saccharomyces cerevisiae, GI6323278, Length=351, Percent_Identity=25.3561253561254, Blast_Score=108, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24666836, Length=532, Percent_Identity=34.9624060150376, Blast_Score=284, Evalue=1e-76,
Organism=Drosophila melanogaster, GI24642252, Length=536, Percent_Identity=29.8507462686567, Blast_Score=229, Evalue=3e-60,
Organism=Drosophila melanogaster, GI18859989, Length=536, Percent_Identity=29.8507462686567, Blast_Score=229, Evalue=3e-60,
Organism=Drosophila melanogaster, GI24641342, Length=533, Percent_Identity=32.6454033771107, Blast_Score=229, Evalue=3e-60,
Organism=Drosophila melanogaster, GI28574259, Length=180, Percent_Identity=29.4444444444444, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007184, Length=214, Percent_Identity=28.9719626168224, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221500365, Length=214, Percent_Identity=28.9719626168224, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 56271; Mature: 56271

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKISGLNKAFTTKVLFDDLNLSINRGEKIGLVGRNGHGKSTLFQMILGNVEPDSGIISV
CEEECCCCCHHHHEEEEECCCEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEC
PKGYKIGHLQQHLHFTKSTVLEECALGLPEGEEYETWQVEKILSGLGFSERDMERNPDEF
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCC
SGGYQIRMNLAKLLVSSPDMLMLDEPNNYLDIVTIRWLEEFLREWEGEIILVTHDRGFMD
CCCEEEEEEHHHHHHCCCCEEEEECCCCEEEEEEHHHHHHHHHHHCCCEEEEECCCCHHH
AVVTHTIAIHRTKAIKVQGDTDKLYNQINQSEEIYEKTRLNEAKKRKQEEVFIAKFKAKA
HHHHHHHEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEHHHHHHH
SFASRAQSRVKKLEKQGEMKALEKIQDLELYFNSAPFAASQMLSVENLCFSYDGREPYLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHEECCCCCCEEE
ENFSIGVGNKERICIIGKNGKGKSTLLKILAGELEPSQGTIKKHPALKEGYFGQTNKLNL
EEEEECCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECC
NENSTVVEEIMISDQSCTEWKARTIAGGLMFSDDQALKKIKVLSGGEKSRVLLGKILVTP
CCCCHHHHHHHHCCCCCHHHHHHHHCCCEEECCHHHHHHHHHHCCCCCCHHHHHHHHHCC
CHLLYLDEPTNHLDMQSCDSLIEAIDEFEGSVIMVTHDELHLRAVATKLVVFDNDTIRIF
EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHEEEEEEEEEEEECCEEEEE
NGPYDDFLNEMGWSDEIY
CCCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIKISGLNKAFTTKVLFDDLNLSINRGEKIGLVGRNGHGKSTLFQMILGNVEPDSGIISV
CEEECCCCCHHHHEEEEECCCEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEC
PKGYKIGHLQQHLHFTKSTVLEECALGLPEGEEYETWQVEKILSGLGFSERDMERNPDEF
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCC
SGGYQIRMNLAKLLVSSPDMLMLDEPNNYLDIVTIRWLEEFLREWEGEIILVTHDRGFMD
CCCEEEEEEHHHHHHCCCCEEEEECCCCEEEEEEHHHHHHHHHHHCCCEEEEECCCCHHH
AVVTHTIAIHRTKAIKVQGDTDKLYNQINQSEEIYEKTRLNEAKKRKQEEVFIAKFKAKA
HHHHHHHEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEHHHHHHH
SFASRAQSRVKKLEKQGEMKALEKIQDLELYFNSAPFAASQMLSVENLCFSYDGREPYLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHEECCCCCCEEE
ENFSIGVGNKERICIIGKNGKGKSTLLKILAGELEPSQGTIKKHPALKEGYFGQTNKLNL
EEEEECCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECC
NENSTVVEEIMISDQSCTEWKARTIAGGLMFSDDQALKKIKVLSGGEKSRVLLGKILVTP
CCCCHHHHHHHHCCCCCHHHHHHHHCCCEEECCHHHHHHHHHHCCCCCCHHHHHHHHHCC
CHLLYLDEPTNHLDMQSCDSLIEAIDEFEGSVIMVTHDELHLRAVATKLVVFDNDTIRIF
EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHEEEEEEEEEEEECCEEEEE
NGPYDDFLNEMGWSDEIY
CCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]