Click here to switch to the map view.

The map label for this gene is tnhA [H]

Identifier: 116327309

GI number: 116327309

Start: 550848

End: 551942

Strand: Direct

Name: tnhA [H]

Synonym: LBL_0501

Alternate gene names: 116327309

Gene position: 550848-551942 (Clockwise)

Preceding gene: 116327298

Following gene: 116327314

Centisome position: 15.24

GC content: 39.27

Gene sequence:

>1095_bases
ATGAAAAGAAAAGTATATGTAGGAATGGATGTCCACAAAGAAACGATCCAAATCGCGTATTTAACGAGCAATTCAAAGGA
AATATTGAAAGAACAACAGATAAAACACAATGAAGTTCAAATCAAAAAGTTCATCAAAAAACTCAAAACAGAATGGAACG
AGATATATTGTTGTTACGAAGCGGGAGTAACCGGTTATCCACTTTACAGATATTTAAAGTCATTGGGAGTGAACTGTATC
CTTGTAGCACCCGGAAAGATCCCAAGACAAAATACCGATAAGATCAAAACGGATAAAAGAGACGCGATCAAATTAGCGAG
ATTAATGCGAAGTGGAGAATTGGAATCGATTCATGTTCCCAGTGAAGAGGACGAAGCAGTAAGAGATTATTTGAGATCCC
GTGACAGTCTTCGTTTGGATTTAGGAAGGAATCGTCAAAGGTTGATGAAATTCTTATTAAGAAAAGACATAAAGTATTCC
ACAACGAAGTATTGGACGGTGAGTCATTACAAATGGTTGAACAATCTTCACTTTAACAACGAGATCCTTCAAGAGACGTT
TAACGATTATTATAGTCGAGTGAGAGTTCAAGAAGAGAATCTAAAAGCGATGGATAAAAAGATACAAGAGATAGCGGAAA
GTGAACCGTATCGAGAGAAAGTGGGAATCTTAAGATGCTTTCGAGGAGTGGACTATTTAACGGCAATGTTCTTACTTTGT
GAGGTAAACGACTTCAAGCGATTCAAAACGGCCGGTTCGTTCATGAGTTTTCTTGGACTTGTTCCTGGAGAATATTCCAG
CGGTTCCAAAAGAAAACAAACAGGGATTACTAAAACTGGAAGTCCGAGACTTAGAAGGATTTTGACGGAAGCGGCTTGGC
AACATCGCTTCCCTGGAACAGGAAGTAAAATCATAACCGCACGTAGATCGGGACAACCTGCATTAGTCGTTGCTTTAGCG
GAAAAAGCTTCTCTCAGGTTACACAAGAAATTTCGCAATCTACAGCTAAGAGGAAAAACTCCTCAAGTGATGATAACGGC
AGTTTCAAGAGAGTTATCCGGATTTCTTTGGGCGGCAATGAATCTTGTAGCCTAA

Upstream 100 bases:

>100_bases
ATTGGTTACTTAGACAAAATGGCGCCCCTTCTGGGCTTGAAAAACGTGGGTTAGATGCGAGCATTTACCACAAAACAAAA
AAACCAACAGAAGGAACGCA

Downstream 100 bases:

>100_bases
AGTTAGAGTAATGTTCATCCAATAATTGAATTCGTTAGAGAAGATGTACGATAAAGGAGGAATACTTGTTGGCGAGAGTG
TTGAAGCAAATTTGAATTTC

Product: transposase IS1533

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIYCCYEAGVTGYPLYRYLKSLGVNCI
LVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPSEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYS
TTKYWTVSHYKWLNNLHFNNEILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLC
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGTGSKIITARRSGQPALVVALA
EKASLRLHKKFRNLQLRGKTPQVMITAVSRELSGFLWAAMNLVA

Sequences:

>Translated_364_residues
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIYCCYEAGVTGYPLYRYLKSLGVNCI
LVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPSEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYS
TTKYWTVSHYKWLNNLHFNNEILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLC
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGTGSKIITARRSGQPALVVALA
EKASLRLHKKFRNLQLRGKTPQVMITAVSRELSGFLWAAMNLVA
>Mature_364_residues
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIYCCYEAGVTGYPLYRYLKSLGVNCI
LVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVPSEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYS
TTKYWTVSHYKWLNNLHFNNEILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLC
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGTGSKIITARRSGQPALVVALA
EKASLRLHKKFRNLQLRGKTPQVMITAVSRELSGFLWAAMNLVA

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase IS1111A/IS1328/IS1533 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42317; Mature: 42317

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIYCCYE
CCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEE
AGVTGYPLYRYLKSLGVNCILVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVP
CCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECC
SEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYSTTKYWTVSHYKWLNNLHFNN
CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCH
EILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLC
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
GSKIITARRSGQPALVVALAEKASLRLHKKFRNLQLRGKTPQVMITAVSRELSGFLWAAM
CCEEEEEECCCCCEEEEEEHHHHHHHHHHHHHCCEECCCCCEEEHHHHHHHHHHHHHHHH
NLVA
HHCC
>Mature Secondary Structure
MKRKVYVGMDVHKETIQIAYLTSNSKEILKEQQIKHNEVQIKKFIKKLKTEWNEIYCCYE
CCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEE
AGVTGYPLYRYLKSLGVNCILVAPGKIPRQNTDKIKTDKRDAIKLARLMRSGELESIHVP
CCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECC
SEEDEAVRDYLRSRDSLRLDLGRNRQRLMKFLLRKDIKYSTTKYWTVSHYKWLNNLHFNN
CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCH
EILQETFNDYYSRVRVQEENLKAMDKKIQEIAESEPYREKVGILRCFRGVDYLTAMFLLC
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EVNDFKRFKTAGSFMSFLGLVPGEYSSGSKRKQTGITKTGSPRLRRILTEAAWQHRFPGT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
GSKIITARRSGQPALVVALAEKASLRLHKKFRNLQLRGKTPQVMITAVSRELSGFLWAAM
CCEEEEEECCCCCEEEEEEHHHHHHHHHHHHHCCEECCCCCEEEHHHHHHHHHHHHHHHH
NLVA
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8171119 [H]