Click here to switch to the map view.

The map label for this gene is slyA [C]

Identifier: 116249167

GI number: 116249167

Start: 545375

End: 545878

Strand: Reverse

Name: slyA [C]

Synonym: pRL120503

Alternate gene names: 116249167

Gene position: 545878-545375 (Counterclockwise)

Preceding gene: 116249175

Following gene: 116249166

Centisome position: 62.74

GC content: 63.89

Gene sequence:

>504_bases
ATGAGACGAGAACGAACGATGGCGACAAAATCACCGCGGGACGATTTCGAGGGCGAAGATGCGCCCGCGACGCCGGGCCT
CGACGTCGGCCGGCTTGGCGACCTGCTGGGATTTCATCTGCGCATGGCGCATGTCGCAGTCTATCGCGACTTCGCCGAAA
CCATGGAGGAACTGGCGCTAACGCAGAAGCAGCTGGCGGTGATGGAACTTGTCTCCGGCAATCCGGGCGCATCGCAGATC
GACCTTGCCAATACGCTCGGCACCGACCGGGCGACGATGATGGCCCTCGTCAACCGGCTGGCAGCCCGCGACCTGATCGA
GCGCCGCCCCTCCGCGGCCGACCGCCGGCGCCAGGAACTTCATCTGACGAAGGCGGGACACGCAATGCTCGCGCGGGCGC
GTGCGCTGATCGATAGGCACGAGCAGCGTTTCATCGACCTGTTTTCGCGCGACGAATTGGATGCGCTGCTGACGGCGCTG
AAGCGGATATACAAGGGGAATTGA

Upstream 100 bases:

>100_bases
AAGAGGCTGTTTAAGGCAAATCCGATCGCTCGAATGGCGCAGGGAAATCCGCAATACGGATATTGACTAACCCGCTGATT
TTGATGGTTATGGCGCCTGG

Downstream 100 bases:

>100_bases
AACCCGCCTTCGCTTGGGAAGCAAGCAGCATCCAAGCCTTTAGATTTCTATTGGGTAACCCCCGTGTTATGATCCCCATC
CTGGCGTTGTCCGCCGTGGG

Product: MarR family transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MRRERTMATKSPRDDFEGEDAPATPGLDVGRLGDLLGFHLRMAHVAVYRDFAETMEELALTQKQLAVMELVSGNPGASQI
DLANTLGTDRATMMALVNRLAARDLIERRPSAADRRRQELHLTKAGHAMLARARALIDRHEQRFIDLFSRDELDALLTAL
KRIYKGN

Sequences:

>Translated_167_residues
MRRERTMATKSPRDDFEGEDAPATPGLDVGRLGDLLGFHLRMAHVAVYRDFAETMEELALTQKQLAVMELVSGNPGASQI
DLANTLGTDRATMMALVNRLAARDLIERRPSAADRRRQELHLTKAGHAMLARARALIDRHEQRFIDLFSRDELDALLTAL
KRIYKGN
>Mature_167_residues
MRRERTMATKSPRDDFEGEDAPATPGLDVGRLGDLLGFHLRMAHVAVYRDFAETMEELALTQKQLAVMELVSGNPGASQI
DLANTLGTDRATMMALVNRLAARDLIERRPSAADRRRQELHLTKAGHAMLARARALIDRHEQRFIDLFSRDELDALLTAL
KRIYKGN

Specific function: May be involved in the regulation of genes for 4- hydroxybenzoyl-CoA reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18766; Mature: 18766

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRERTMATKSPRDDFEGEDAPATPGLDVGRLGDLLGFHLRMAHVAVYRDFAETMEELAL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQKQLAVMELVSGNPGASQIDLANTLGTDRATMMALVNRLAARDLIERRPSAADRRRQEL
HHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
HLTKAGHAMLARARALIDRHEQRFIDLFSRDELDALLTALKRIYKGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRERTMATKSPRDDFEGEDAPATPGLDVGRLGDLLGFHLRMAHVAVYRDFAETMEELAL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQKQLAVMELVSGNPGASQIDLANTLGTDRATMMALVNRLAARDLIERRPSAADRRRQEL
HHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
HLTKAGHAMLARARALIDRHEQRFIDLFSRDELDALLTALKRIYKGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9490068 [H]