| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is pcbC [H]
Identifier: 114799572
GI number: 114799572
Start: 2344554
End: 2345501
Strand: Direct
Name: pcbC [H]
Synonym: HNE_2242
Alternate gene names: 114799572
Gene position: 2344554-2345501 (Clockwise)
Preceding gene: 114798196
Following gene: 114797797
Centisome position: 63.28
GC content: 62.87
Gene sequence:
>948_bases ATGACCCAATATTTCGAACCGATCCCCTACCCGCTCTGGCACACCGACAAGGCAGGCTTTGCCGAAAAGCTCGGAAAGTC CTTCCGGGAAACCGGCTTTGCCGTCATCACCGGCCATCCGATCCAGCAGCCCGTGATCGATGACAACCTTGCGGCCACCA AGGCGTTCTTCGCCCTGCCTGAAGCGGCCAAGGAAACCTACCATGACGCGCCCGGCGGCCGTCAGCGGGGGTACACGCCC TTCGGAACAGAAAACGCCAAGGGTCAGGCGCAGGCAGACCTCAAGGAATTCTGGCACACCGGGCGCGACCTGCCGCCAGG TTCCCCCTACCGCGCCACAATGAAAGACACGCCCAGCGTCTCTGAAGTGGCCGATTTCGACCGCGCCACCCATACCCTCT ACACGGCGCTGGATGATTTCGGCGCTGACCTGCTCAAAGGTGTGGCGCTGCATCTGAACCTTCCCGAGGACTGGTTTGCC GACAAGGTGAACTTCGGCAACTCGATCCTGCGCCTTCTGCATTATCCGCCGCAGATGAACCCGCCACCGGAAGGCTCGGT CCGCGCCGGCGCGCATGAAGACATCAACGTCATCACCCTGCTGCTGGGCGCAGAGGAAGCCGGTCTCGAAGTGAAACACC GCTCGGGCAAATGGCTGGCGGTGAACCCGCCGCCGGGCGCCCTGGTCATAAATTGCGGCGACATGCTCCAGCGTTATACC GGCGGCGTGCTGCCTTCGACGACGCACCGCGTCGTCAATCCCGCGCCGGAACGCGCCCGCTTCCCGCGCTATTCGACGCC CTTCTTCCTTCACTTCAATCAGGATTTCATGATTGAAGCCCTGCCCGGCTGCCTCGCCGAAGGCGGCAAGGCCCAGCCAC CGATCACAGCGCAGGACTTCCTGATGGAGCGCCTGCGCGAGATCGGGCTGGTCAAAGAGCGCAGTTAA
Upstream 100 bases:
>100_bases GGCCCCGCGTGCCGCCTTGCCCATATAGACCATCAGCTTCCTGCTTTCCGCGTCAGGCCGCCCCCTATCGGGCCCCTGCC ACTTCTGGCAAAATATCCTC
Downstream 100 bases:
>100_bases CCCTGCTCTACCTCTCGTTACCGGCCATGCCCGCTGGCACGGAAGTTGACTGTCTCCAGATGGCCTGAGCCAATCTGGGA GCCACGATCATGCCAGCCAT
Product: 2OG-Fe(II) oxygenase family oxidoreductase
Products: NA
Alternate protein names: IPNS [H]
Number of amino acids: Translated: 315; Mature: 314
Protein sequence:
>315_residues MTQYFEPIPYPLWHTDKAGFAEKLGKSFRETGFAVITGHPIQQPVIDDNLAATKAFFALPEAAKETYHDAPGGRQRGYTP FGTENAKGQAQADLKEFWHTGRDLPPGSPYRATMKDTPSVSEVADFDRATHTLYTALDDFGADLLKGVALHLNLPEDWFA DKVNFGNSILRLLHYPPQMNPPPEGSVRAGAHEDINVITLLLGAEEAGLEVKHRSGKWLAVNPPPGALVINCGDMLQRYT GGVLPSTTHRVVNPAPERARFPRYSTPFFLHFNQDFMIEALPGCLAEGGKAQPPITAQDFLMERLREIGLVKERS
Sequences:
>Translated_315_residues MTQYFEPIPYPLWHTDKAGFAEKLGKSFRETGFAVITGHPIQQPVIDDNLAATKAFFALPEAAKETYHDAPGGRQRGYTP FGTENAKGQAQADLKEFWHTGRDLPPGSPYRATMKDTPSVSEVADFDRATHTLYTALDDFGADLLKGVALHLNLPEDWFA DKVNFGNSILRLLHYPPQMNPPPEGSVRAGAHEDINVITLLLGAEEAGLEVKHRSGKWLAVNPPPGALVINCGDMLQRYT GGVLPSTTHRVVNPAPERARFPRYSTPFFLHFNQDFMIEALPGCLAEGGKAQPPITAQDFLMERLREIGLVKERS >Mature_314_residues TQYFEPIPYPLWHTDKAGFAEKLGKSFRETGFAVITGHPIQQPVIDDNLAATKAFFALPEAAKETYHDAPGGRQRGYTPF GTENAKGQAQADLKEFWHTGRDLPPGSPYRATMKDTPSVSEVADFDRATHTLYTALDDFGADLLKGVALHLNLPEDWFAD KVNFGNSILRLLHYPPQMNPPPEGSVRAGAHEDINVITLLLGAEEAGLEVKHRSGKWLAVNPPPGALVINCGDMLQRYTG GVLPSTTHRVVNPAPERARFPRYSTPFFLHFNQDFMIEALPGCLAEGGKAQPPITAQDFLMERLREIGLVKERS
Specific function: Removes, in the presence of oxygen, 4 hydrogen atoms from delta-L-(alpha-aminoadipyl)-L-cysteinyl-D-valine (ACV) to form the azetidinone and thiazolidine rings of isopenicillin [H]
COG id: COG3491
COG function: function code R; Isopenicillin N synthase and related dioxygenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Fe2OG dioxygenase domain [H]
Homologues:
Organism=Drosophila melanogaster, GI85816264, Length=263, Percent_Identity=30.4182509505703, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI28572124, Length=284, Percent_Identity=29.2253521126761, Blast_Score=95, Evalue=5e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002057 - InterPro: IPR002283 - InterPro: IPR005123 [H]
Pfam domain/function: PF03171 2OG-FeII_Oxy [H]
EC number: =1.21.3.1 [H]
Molecular weight: Translated: 34802; Mature: 34671
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: PS00041 HTH_ARAC_FAMILY_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQYFEPIPYPLWHTDKAGFAEKLGKSFRETGFAVITGHPIQQPVIDDNLAATKAFFALP CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHCC EAAKETYHDAPGGRQRGYTPFGTENAKGQAQADLKEFWHTGRDLPPGSPYRATMKDTPSV HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCH SEVADFDRATHTLYTALDDFGADLLKGVALHLNLPEDWFADKVNFGNSILRLLHYPPQMN HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC PPPEGSVRAGAHEDINVITLLLGAEEAGLEVKHRSGKWLAVNPPPGALVINCGDMLQRYT CCCCCCCCCCCCCCCEEEEEEECCHHHCCEEEECCCCEEEECCCCCEEEECHHHHHHHHH GGVLPSTTHRVVNPAPERARFPRYSTPFFLHFNQDFMIEALPGCLAEGGKAQPPITAQDF CCCCCCCCHHHCCCCHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHH LMERLREIGLVKERS HHHHHHHCCCCCCCC >Mature Secondary Structure TQYFEPIPYPLWHTDKAGFAEKLGKSFRETGFAVITGHPIQQPVIDDNLAATKAFFALP CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHCC EAAKETYHDAPGGRQRGYTPFGTENAKGQAQADLKEFWHTGRDLPPGSPYRATMKDTPSV HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCH SEVADFDRATHTLYTALDDFGADLLKGVALHLNLPEDWFADKVNFGNSILRLLHYPPQMN HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC PPPEGSVRAGAHEDINVITLLLGAEEAGLEVKHRSGKWLAVNPPPGALVINCGDMLQRYT CCCCCCCCCCCCCCCEEEEEEECCHHHCCEEEECCCCEEEECCCCCEEEECHHHHHHHHH GGVLPSTTHRVVNPAPERARFPRYSTPFFLHFNQDFMIEALPGCLAEGGKAQPPITAQDF CCCCCCCCHHHCCCCHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHH LMERLREIGLVKERS HHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1901702 [H]