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The map label for this gene is yqgF [C]

Identifier: 114799411

GI number: 114799411

Start: 2398166

End: 2398621

Strand: Direct

Name: yqgF [C]

Synonym: HNE_2300

Alternate gene names: 114799411

Gene position: 2398166-2398621 (Clockwise)

Preceding gene: 114797865

Following gene: 114797332

Centisome position: 64.73

GC content: 68.2

Gene sequence:

>456_bases
ATGGCTGTGGTGGATCTCTTCGACCTGCCCCGCGAGGGCGTGCTTCTGGGCATAGATCCCGGAACCGCCACGATTGGCGT
CGCCGCCACCGACCGCATCCGCATGATGGCCTCGCCGGTCGAGACGATCCTCAAGAAAAAGCTCGCCCCGTCGCTTGAGC
GCCTGTTGCACATCTACGACGAACGCGCCGCCGTTGGGCTCATCGTCGGCCTGCCGCTGAATGTCGATGGCAGCATGGGC
CCCCGCGCCCAGTCTGTCCGCACACTGGTCTCCAGCCTCCTGAAAGTGCGCGATCTGCCCGTCACCTTCCAGGACGAGCG
CTATTCCTCCGCCGAAGCGGGCGACATCATGCGCGCGGCCGGCGCCACCCGCCGGAACCGCGAAGCCCGAATCGACGCTT
CCGCCGCCGCCGTCATCCTGCAGGACGCCCTCTCCCGGCTGGAGCGGCGCCCGTGA

Upstream 100 bases:

>100_bases
GGACATCGTCGCGGGTAACGCTCATTGGCAGGCTCCTGATGGTCTTTGCCCCATACGCCATAGGCAGAGGCCCATCAAGG
CTGTAAGGGACGCAGCGAAC

Downstream 100 bases:

>100_bases
ACGCCTTCCTGATCGCGCTGCTGCCGGTCATCCTGATCGTCGCGCTCGGGCAACTCCTCTCCACCCGCCGCTGGATTGCG
CCGGAAGCCTTCCGCTCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MAVVDLFDLPREGVLLGIDPGTATIGVAATDRIRMMASPVETILKKKLAPSLERLLHIYDERAAVGLIVGLPLNVDGSMG
PRAQSVRTLVSSLLKVRDLPVTFQDERYSSAEAGDIMRAAGATRRNREARIDASAAAVILQDALSRLERRP

Sequences:

>Translated_151_residues
MAVVDLFDLPREGVLLGIDPGTATIGVAATDRIRMMASPVETILKKKLAPSLERLLHIYDERAAVGLIVGLPLNVDGSMG
PRAQSVRTLVSSLLKVRDLPVTFQDERYSSAEAGDIMRAAGATRRNREARIDASAAAVILQDALSRLERRP
>Mature_150_residues
AVVDLFDLPREGVLLGIDPGTATIGVAATDRIRMMASPVETILKKKLAPSLERLLHIYDERAAVGLIVGLPLNVDGSMGP
RAQSVRTLVSSLLKVRDLPVTFQDERYSSAEAGDIMRAAGATRRNREARIDASAAAVILQDALSRLERRP

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=134, Percent_Identity=30.5970149253731, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_HYPNA (Q0BZU8)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_760995.1
- ProteinModelPortal:   Q0BZU8
- SMR:   Q0BZU8
- STRING:   Q0BZU8
- GeneID:   4289548
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_2300
- NMPDR:   fig|228405.5.peg.2216
- TIGR:   HNE_2300
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   KYLGIDY
- PhylomeDB:   Q0BZU8
- BioCyc:   HNEP81032:HNE_2300-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16316; Mature: 16185

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVVDLFDLPREGVLLGIDPGTATIGVAATDRIRMMASPVETILKKKLAPSLERLLHIYD
CCEECCCCCCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
ERAAVGLIVGLPLNVDGSMGPRAQSVRTLVSSLLKVRDLPVTFQDERYSSAEAGDIMRAA
CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHH
GATRRNREARIDASAAAVILQDALSRLERRP
CCCCCCCCHHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AVVDLFDLPREGVLLGIDPGTATIGVAATDRIRMMASPVETILKKKLAPSLERLLHIYD
CEECCCCCCCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
ERAAVGLIVGLPLNVDGSMGPRAQSVRTLVSSLLKVRDLPVTFQDERYSSAEAGDIMRAA
CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHH
GATRRNREARIDASAAAVILQDALSRLERRP
CCCCCCCCHHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA