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The map label for this gene is hofQ [C]

Identifier: 114799376

GI number: 114799376

Start: 3183724

End: 3185331

Strand: Reverse

Name: hofQ [C]

Synonym: HNE_3014

Alternate gene names: 114799376

Gene position: 3185331-3183724 (Counterclockwise)

Preceding gene: 114799072

Following gene: 114798148

Centisome position: 85.97

GC content: 60.63

Gene sequence:

>1608_bases
ATGCGCACGATCAAGGCGCTGACCTGCGCTGCCATAGTTGCAATCCTCCCAGCGCCCTTCGCGTTGGCCCAGACCATTCC
CAACGGCATGGGCACCAGCATCACCAAGCCGGGTGACCAGGCCGTTTCCCGCCGCGTGACGCTGGGCGTCGACAAGTCGA
TGATCGTCGATCTGGAAGCACCTGCCGCCGATGTGGTCATTTCCAATCCGGAGATTGCCGACGCTGTCGTGCAGACCGCG
CAGCGGATCATCTTCCGGGGCATCAAGTTCGGACAGACCAATGCCCTGATCTTTGACCGGGCCGGCAACACCCTGCTTGA
TCTCAACATCATGGTTGAGACCGATCTTGCTGCGCTCGAAGAGACCATCTCGCGCCACATTCCCGATGCGCGCGTCAAGA
TCGAAAGCTTCAATGGCAGCGTCATCCTGACCGGCATGGTGGACAACCTCTCCCAGTCTGATCAGGTCAGCCAACTGGTA
AAGGCGTTTTTCCCGGAATCGGCCGGGGGCGGTGAACTCCAGATCGTCAACATGCTGAACGTCAACGCGGCCGATCAGGT
CATGCTCGAAGTGCGCATCGTCGAGATGCAGCGCAGCGTGATCAAACAGCTTGGTATCAATCTCTCGGGCGCCACCAGCT
TCGGCGAACTGGCAAACCAGACCCTGCAGCAGGTTTTCCAGGGCGGCTTGCCTCTGTTCTTCGATCCGGATTCCGGCGAG
TACAACACGACCGGTCAAGGCACCGCTGTCGAAATGCTCCAGCCAGCCGGCCCCTCCAGCAATACGATCAGCGGCAGCGC
GTCGAGCGGCTTCAACGTTCAGGGACAGGCGCTGGGCGGCATCTCACTGGAAACCGGATACACCAATTACAACAATGGCC
GTCTGCAATCCTCCATCGGCGCCGCGATCGATGCCATGGAGCGGGTAGGTATCGTCCGCACACTGGCAGAACCCAACATC
GTCGCCATGTCGGGCGAAAGCGCCAAATTCCTCGCGGGCGGCGAGTTCCCCGTGCCGGTCGGCCAGAACCAGAACGGTCA
GATCACGGTTGAGTTCAAGCCCTATGGCGTGGGCCTTGCCTTCACCCCGGTCGTGCTGTCCGAGGGCCGCATATCTCTGA
AGGTTTCGACCGAAGTGTCCGAGTTGACCTCACAGGGCGCCTTCCAGGGCGCGGCTCAGACCATCACCGATGGAGATGGC
AACACGACCATCATCCAGGGCGCCACACTGCCGGCCCTGTCCGTCCGGCGCGCTGAATCGGTGGTCGAGCTTCCCTCGGG
CGGCTCGATGATGATGGCCGGTCTCATCTCGGTGAAAGACCGTCAGACCATCGACCAGCTGCCCGGCCTCAAGAAATTGC
CGATCCTCGGATCCCTGTTCCAGTCGCGGGACTTCCTGTCGGAAGAAACAGAACTGGTGGTGATGGTAACGCCTTATCTC
GTCGGCGCTACCAACAAGGCAAGCATGGTGACGCCGGCCGATGGTTACGCCAACGCATCGGACGCCAAGACCATCTTCTT
CGGCAAGCTGAATGAAACCTATGGCCGTGATGGCGCTCCCATCAAGCCGGATGACTATCGCGCCCCCGTGGGCTTTATGG
AAGAGTAG

Upstream 100 bases:

>100_bases
AGCCGCGCCTCGAGCTGAATGGCGGGGATGAAGGGGAAGGCGCGGTCATGATTATCCGCAACAGCCAGCCGACACTTACG
GCCATGGGGAGCAACTGAAC

Downstream 100 bases:

>100_bases
GGCAAGACAGACATGACCCGTCACATCCGTTCACTGAAAACACTCATCGCGTTGGGCGCCGGCGCCGCGGCGATCACGGC
CTGCGCCAGCGTCGCGCCGA

Product: pilus assembly protein CpaC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MRTIKALTCAAIVAILPAPFALAQTIPNGMGTSITKPGDQAVSRRVTLGVDKSMIVDLEAPAADVVISNPEIADAVVQTA
QRIIFRGIKFGQTNALIFDRAGNTLLDLNIMVETDLAALEETISRHIPDARVKIESFNGSVILTGMVDNLSQSDQVSQLV
KAFFPESAGGGELQIVNMLNVNAADQVMLEVRIVEMQRSVIKQLGINLSGATSFGELANQTLQQVFQGGLPLFFDPDSGE
YNTTGQGTAVEMLQPAGPSSNTISGSASSGFNVQGQALGGISLETGYTNYNNGRLQSSIGAAIDAMERVGIVRTLAEPNI
VAMSGESAKFLAGGEFPVPVGQNQNGQITVEFKPYGVGLAFTPVVLSEGRISLKVSTEVSELTSQGAFQGAAQTITDGDG
NTTIIQGATLPALSVRRAESVVELPSGGSMMMAGLISVKDRQTIDQLPGLKKLPILGSLFQSRDFLSEETELVVMVTPYL
VGATNKASMVTPADGYANASDAKTIFFGKLNETYGRDGAPIKPDDYRAPVGFMEE

Sequences:

>Translated_535_residues
MRTIKALTCAAIVAILPAPFALAQTIPNGMGTSITKPGDQAVSRRVTLGVDKSMIVDLEAPAADVVISNPEIADAVVQTA
QRIIFRGIKFGQTNALIFDRAGNTLLDLNIMVETDLAALEETISRHIPDARVKIESFNGSVILTGMVDNLSQSDQVSQLV
KAFFPESAGGGELQIVNMLNVNAADQVMLEVRIVEMQRSVIKQLGINLSGATSFGELANQTLQQVFQGGLPLFFDPDSGE
YNTTGQGTAVEMLQPAGPSSNTISGSASSGFNVQGQALGGISLETGYTNYNNGRLQSSIGAAIDAMERVGIVRTLAEPNI
VAMSGESAKFLAGGEFPVPVGQNQNGQITVEFKPYGVGLAFTPVVLSEGRISLKVSTEVSELTSQGAFQGAAQTITDGDG
NTTIIQGATLPALSVRRAESVVELPSGGSMMMAGLISVKDRQTIDQLPGLKKLPILGSLFQSRDFLSEETELVVMVTPYL
VGATNKASMVTPADGYANASDAKTIFFGKLNETYGRDGAPIKPDDYRAPVGFMEE
>Mature_535_residues
MRTIKALTCAAIVAILPAPFALAQTIPNGMGTSITKPGDQAVSRRVTLGVDKSMIVDLEAPAADVVISNPEIADAVVQTA
QRIIFRGIKFGQTNALIFDRAGNTLLDLNIMVETDLAALEETISRHIPDARVKIESFNGSVILTGMVDNLSQSDQVSQLV
KAFFPESAGGGELQIVNMLNVNAADQVMLEVRIVEMQRSVIKQLGINLSGATSFGELANQTLQQVFQGGLPLFFDPDSGE
YNTTGQGTAVEMLQPAGPSSNTISGSASSGFNVQGQALGGISLETGYTNYNNGRLQSSIGAAIDAMERVGIVRTLAEPNI
VAMSGESAKFLAGGEFPVPVGQNQNGQITVEFKPYGVGLAFTPVVLSEGRISLKVSTEVSELTSQGAFQGAAQTITDGDG
NTTIIQGATLPALSVRRAESVVELPSGGSMMMAGLISVKDRQTIDQLPGLKKLPILGSLFQSRDFLSEETELVVMVTPYL
VGATNKASMVTPADGYANASDAKTIFFGKLNETYGRDGAPIKPDDYRAPVGFMEE

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=200, Percent_Identity=29, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 56377; Mature: 56377

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTIKALTCAAIVAILPAPFALAQTIPNGMGTSITKPGDQAVSRRVTLGVDKSMIVDLEA
CCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCHHHHHCEEEECCCCEEEEEECC
PAADVVISNPEIADAVVQTAQRIIFRGIKFGQTNALIFDRAGNTLLDLNIMVETDLAALE
CCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEEEECHHHHHH
ETISRHIPDARVKIESFNGSVILTGMVDNLSQSDQVSQLVKAFFPESAGGGELQIVNMLN
HHHHHCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEC
VNAADQVMLEVRIVEMQRSVIKQLGINLSGATSFGELANQTLQQVFQGGLPLFFDPDSGE
CCCHHHEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCC
YNTTGQGTAVEMLQPAGPSSNTISGSASSGFNVQGQALGGISLETGYTNYNNGRLQSSIG
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECEEECCEEEECCCCCCCCCEEHHHHH
AAIDAMERVGIVRTLAEPNIVAMSGESAKFLAGGEFPVPVGQNQNGQITVEFKPYGVGLA
HHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCEE
FTPVVLSEGRISLKVSTEVSELTSQGAFQGAAQTITDGDGNTTIIQGATLPALSVRRAES
EEEEEECCCEEEEEEECCHHHHHHCCCCCCCHHEEECCCCCEEEEECCCCCHHHHHHHHH
VVELPSGGSMMMAGLISVKDRQTIDQLPGLKKLPILGSLFQSRDFLSEETELVVMVTPYL
HEECCCCCCEEEHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECEE
VGATNKASMVTPADGYANASDAKTIFFGKLNETYGRDGAPIKPDDYRAPVGFMEE
EECCCCCCEECCCCCCCCCCCCCEEEEECCCHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTIKALTCAAIVAILPAPFALAQTIPNGMGTSITKPGDQAVSRRVTLGVDKSMIVDLEA
CCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCHHHHHCEEEECCCCEEEEEECC
PAADVVISNPEIADAVVQTAQRIIFRGIKFGQTNALIFDRAGNTLLDLNIMVETDLAALE
CCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEEEECHHHHHH
ETISRHIPDARVKIESFNGSVILTGMVDNLSQSDQVSQLVKAFFPESAGGGELQIVNMLN
HHHHHCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEC
VNAADQVMLEVRIVEMQRSVIKQLGINLSGATSFGELANQTLQQVFQGGLPLFFDPDSGE
CCCHHHEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCC
YNTTGQGTAVEMLQPAGPSSNTISGSASSGFNVQGQALGGISLETGYTNYNNGRLQSSIG
CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECEEECCEEEECCCCCCCCCEEHHHHH
AAIDAMERVGIVRTLAEPNIVAMSGESAKFLAGGEFPVPVGQNQNGQITVEFKPYGVGLA
HHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCEE
FTPVVLSEGRISLKVSTEVSELTSQGAFQGAAQTITDGDGNTTIIQGATLPALSVRRAES
EEEEEECCCEEEEEEECCHHHHHHCCCCCCCHHEEECCCCCEEEEECCCCCHHHHHHHHH
VVELPSGGSMMMAGLISVKDRQTIDQLPGLKKLPILGSLFQSRDFLSEETELVVMVTPYL
HEECCCCCCEEEHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECEE
VGATNKASMVTPADGYANASDAKTIFFGKLNETYGRDGAPIKPDDYRAPVGFMEE
EECCCCCCEECCCCCCCCCCCCCEEEEECCCHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]