| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is tag [H]
Identifier: 114798473
GI number: 114798473
Start: 877802
End: 878383
Strand: Reverse
Name: tag [H]
Synonym: HNE_0860
Alternate gene names: 114798473
Gene position: 878383-877802 (Counterclockwise)
Preceding gene: 114798165
Following gene: 114797522
Centisome position: 23.71
GC content: 59.79
Gene sequence:
>582_bases ATGAGTGAACCCCATTCCTGCGGCTGGGCGCCGGTGACCGATCCCATTTACCGCGCCTATCATGATGAAGAATGGGGCGT GCCCGAGCGCGACCCGCGCGCGCTGTGGGAGAAGCTGCAGCTGGACGGGATGCAGGCAGGGCTGAGCTGGATCACAATTC TGAGGAAGCGGGAGAGCATTCGGGAAGAGTTTGACGAGTTTGACCCGGAAAAATTGGCTCGCTGGACGCCCAGACGCGCT GAAAAGGCGCTGACCAATCCCGGCATCATCCGCAGCCCCAAGAAGATCGACGCCGTGATCGGCAACGCCCGGAGCTACCT GTCCATGATGGAAGCGGGCGATGATTTCTCGGATTACTGCTGGGGCTATGTCGGCGGCAAACCCGTTGTAAACAAATGGA AGAATTTCCGCGAGGCGCCCACCAGCACGGACTGGTCGGCGGCAATGTCCAGGGACCTCAAGAAGCGCGGCTTCAAATTT GTAGGCCCGACAATTGTCTATGCGTGGGCACAGGCCGTTGGCATGGTCAACGATCATGAGGTAGGGTGTCCCCGTCACAA GGGTGTGCGGGAGAGACCATGA
Upstream 100 bases:
>100_bases CAGGATAAACAGCCTGTCACCGTGAACGACGCTCCCGCCGAAATCGACGGCGCGCCGTGGCTGATTGCCGAAGTCAAAGC CCATCTGGAGGCCAAAGCCG
Downstream 100 bases:
>100_bases AAACGCTTATGTTTATGACGGCGATGGGATTGCTGGCGGCTGTCGGCGGCTGCGCAAGCGGTACCCCGTCGAACGCGTAT GCCAACCCGGTGGATGAATG
Product: DNA-3-methyladenine glycosylase I
Products: NA
Alternate protein names: 3-methyladenine-DNA glycosylase I, constitutive; TAG I; DNA-3-methyladenine glycosidase I; DNA-3-methyladenine glycosylase I [H]
Number of amino acids: Translated: 193; Mature: 192
Protein sequence:
>193_residues MSEPHSCGWAPVTDPIYRAYHDEEWGVPERDPRALWEKLQLDGMQAGLSWITILRKRESIREEFDEFDPEKLARWTPRRA EKALTNPGIIRSPKKIDAVIGNARSYLSMMEAGDDFSDYCWGYVGGKPVVNKWKNFREAPTSTDWSAAMSRDLKKRGFKF VGPTIVYAWAQAVGMVNDHEVGCPRHKGVRERP
Sequences:
>Translated_193_residues MSEPHSCGWAPVTDPIYRAYHDEEWGVPERDPRALWEKLQLDGMQAGLSWITILRKRESIREEFDEFDPEKLARWTPRRA EKALTNPGIIRSPKKIDAVIGNARSYLSMMEAGDDFSDYCWGYVGGKPVVNKWKNFREAPTSTDWSAAMSRDLKKRGFKF VGPTIVYAWAQAVGMVNDHEVGCPRHKGVRERP >Mature_192_residues SEPHSCGWAPVTDPIYRAYHDEEWGVPERDPRALWEKLQLDGMQAGLSWITILRKRESIREEFDEFDPEKLARWTPRRAE KALTNPGIIRSPKKIDAVIGNARSYLSMMEAGDDFSDYCWGYVGGKPVVNKWKNFREAPTSTDWSAAMSRDLKKRGFKFV GPTIVYAWAQAVGMVNDHEVGCPRHKGVRERP
Specific function: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine from the damaged DNA polymer formed by alkylation lesions [H]
COG id: COG2818
COG function: function code L; 3-methyladenine DNA glycosylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789971, Length=182, Percent_Identity=52.1978021978022, Blast_Score=201, Evalue=4e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005019 - InterPro: IPR011257 - InterPro: IPR004597 [H]
Pfam domain/function: PF03352 Adenine_glyco [H]
EC number: =3.2.2.20 [H]
Molecular weight: Translated: 22155; Mature: 22024
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEPHSCGWAPVTDPIYRAYHDEEWGVPERDPRALWEKLQLDGMQAGLSWITILRKRESI CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH REEFDEFDPEKLARWTPRRAEKALTNPGIIRSPKKIDAVIGNARSYLSMMEAGDDFSDYC HHHHHHCCHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH WGYVGGKPVVNKWKNFREAPTSTDWSAAMSRDLKKRGFKFVGPTIVYAWAQAVGMVNDHE HHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC VGCPRHKGVRERP CCCCCCCCCCCCC >Mature Secondary Structure SEPHSCGWAPVTDPIYRAYHDEEWGVPERDPRALWEKLQLDGMQAGLSWITILRKRESI CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH REEFDEFDPEKLARWTPRRAEKALTNPGIIRSPKKIDAVIGNARSYLSMMEAGDDFSDYC HHHHHHCCHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH WGYVGGKPVVNKWKNFREAPTSTDWSAAMSRDLKKRGFKFVGPTIVYAWAQAVGMVNDHE HHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC VGCPRHKGVRERP CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3536912; 3520491; 8041620; 9278503 [H]