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The map label for this gene is ybdL [C]

Identifier: 114798381

GI number: 114798381

Start: 907685

End: 908821

Strand: Reverse

Name: ybdL [C]

Synonym: HNE_0889

Alternate gene names: 114798381

Gene position: 908821-907685 (Counterclockwise)

Preceding gene: 114797782

Following gene: 114800041

Centisome position: 24.53

GC content: 64.47

Gene sequence:

>1137_bases
ATGGGACAGGATATTGCGCCGTTTCAGGCGATCTCGATCAGCCGCCGCGCGCATGAGCTCAAAGCCGCTGGCCAGCGCAT
TCTGCATATGGAGTTTGGCCAGCCCTCGACGGGCGCGCCCAAGGCCGCAATTGCTGCGGCGCATGGCGTGCTCGACAGCG
AGGCGATGGGCTATTGGGAAAGCCTGCCGCTGAAAGAGCGTATCTGCCAGCATTATCAGGACAGCTATGGCGTTTCCCTT
TCGCCCCGGCGGCTGGTGATTACGTGCGGGGCGTCCCCTGCCCTCGTGCTGGCGCTGGCGACGGCGTTCAGTCCGGGCGA
CCGCATTGCCATCGCGCGGCCGGGCTATGTGGCTTATCGCAATACTCTGCGTGCGCTGAACATGGAGCCGGTGGAGATTG
CCTGCGGGGCGGAGGTACGCTTCCAGTTGTCGGCCGCCGCGCTCGAGGCGCTGGAGCCTGCGCCCATGGGCGTGATCATT
GCCAGCCCGGCCAACCCCACCGGCACGATCATTCCGAAAGAGGAACTCGCCGCGATTGCCGAGGTTTGCGCGCGGCGGGG
TATACAGATCATCTCCGACGAGATCTATCATGGCCTCACTTATGGCCCGAAGATCCATTCGATGCTGGAGTTTGCGCCCA
GCGCCTACATCGTCAACAGCTTCTCCAAATACTTCTCGATGGCGGGCTGGCGGCTCGGCTGGCTGGTGTCGCCCGAAGCC
GGCGTGGCGCGCACGGGTGCCTATATCGGCAACCTCTTTCTCACGGCGCCGTCGCTGGCTCAGCATGCGGGCCTCGTGGC
GATGGACAGCCGCGAGGAGCTGGAGGGACATCTGGATGTCTACCGGCGTAACCGGGAATTGCTGCTCGGCGCCCTGCCCG
GCCTTGGCCTCGAAAAGATCGCGCCGCCGGACGGGGCGTTTTATATCTATGCGGATGTTTCGCGCTTCACCGATGACAGT
CTCGGCTTCTGCCTGAAGCTGCTGGAAGAAACGGGCGTCGCGACCGCGCCGGGCGTGGACTTTGACCCCGTGGAGGGCGG
CCGCTTCATGCGCTTTTCGTTTGCGCTGTCGACGCCGGAAATCGAGGAAGCGCTGGCGCGTCTGGAGCCCTGGTTCAAGG
CACAGCCACGGCGCTGA

Upstream 100 bases:

>100_bases
TGGACTGCAGCTGATTCTGCTGGCAATGATCGCGGCGATTCCGGGGCTGGCAACTTGGTTGCCGGCACTGGCCGCGAAAT
AATCAAGAACAGGGTTCCAG

Downstream 100 bases:

>100_bases
AAGCGGCTACGATCCGCAGGCCGCCCAGAAGCTTTCCGTGCCCGGTATATCGCCCTGGGCAATTTCCTGCTCCGGTACGA
AGAGTTCAAAATCTGCCTCG

Product: classes I and II aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MGQDIAPFQAISISRRAHELKAAGQRILHMEFGQPSTGAPKAAIAAAHGVLDSEAMGYWESLPLKERICQHYQDSYGVSL
SPRRLVITCGASPALVLALATAFSPGDRIAIARPGYVAYRNTLRALNMEPVEIACGAEVRFQLSAAALEALEPAPMGVII
ASPANPTGTIIPKEELAAIAEVCARRGIQIISDEIYHGLTYGPKIHSMLEFAPSAYIVNSFSKYFSMAGWRLGWLVSPEA
GVARTGAYIGNLFLTAPSLAQHAGLVAMDSREELEGHLDVYRRNRELLLGALPGLGLEKIAPPDGAFYIYADVSRFTDDS
LGFCLKLLEETGVATAPGVDFDPVEGGRFMRFSFALSTPEIEEALARLEPWFKAQPRR

Sequences:

>Translated_378_residues
MGQDIAPFQAISISRRAHELKAAGQRILHMEFGQPSTGAPKAAIAAAHGVLDSEAMGYWESLPLKERICQHYQDSYGVSL
SPRRLVITCGASPALVLALATAFSPGDRIAIARPGYVAYRNTLRALNMEPVEIACGAEVRFQLSAAALEALEPAPMGVII
ASPANPTGTIIPKEELAAIAEVCARRGIQIISDEIYHGLTYGPKIHSMLEFAPSAYIVNSFSKYFSMAGWRLGWLVSPEA
GVARTGAYIGNLFLTAPSLAQHAGLVAMDSREELEGHLDVYRRNRELLLGALPGLGLEKIAPPDGAFYIYADVSRFTDDS
LGFCLKLLEETGVATAPGVDFDPVEGGRFMRFSFALSTPEIEEALARLEPWFKAQPRR
>Mature_377_residues
GQDIAPFQAISISRRAHELKAAGQRILHMEFGQPSTGAPKAAIAAAHGVLDSEAMGYWESLPLKERICQHYQDSYGVSLS
PRRLVITCGASPALVLALATAFSPGDRIAIARPGYVAYRNTLRALNMEPVEIACGAEVRFQLSAAALEALEPAPMGVIIA
SPANPTGTIIPKEELAAIAEVCARRGIQIISDEIYHGLTYGPKIHSMLEFAPSAYIVNSFSKYFSMAGWRLGWLVSPEAG
VARTGAYIGNLFLTAPSLAQHAGLVAMDSREELEGHLDVYRRNRELLLGALPGLGLEKIAPPDGAFYIYADVSRFTDDSL
GFCLKLLEETGVATAPGVDFDPVEGGRFMRFSFALSTPEIEEALARLEPWFKAQPRR

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713256, Length=330, Percent_Identity=25.4545454545455, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI56713254, Length=330, Percent_Identity=25.4545454545455, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI95147551, Length=395, Percent_Identity=20.7594936708861, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI169881279, Length=395, Percent_Identity=20.7594936708861, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI4507369, Length=312, Percent_Identity=24.6794871794872, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI169881281, Length=243, Percent_Identity=21.8106995884774, Blast_Score=76, Evalue=5e-14,
Organism=Escherichia coli, GI1786816, Length=326, Percent_Identity=28.8343558282209, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1788627, Length=354, Percent_Identity=25.7062146892655, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788722, Length=378, Percent_Identity=24.8677248677249, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1787710, Length=327, Percent_Identity=25.3822629969419, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1790797, Length=178, Percent_Identity=32.0224719101124, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787909, Length=367, Percent_Identity=24.7956403269755, Blast_Score=65, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17567663, Length=372, Percent_Identity=27.4193548387097, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71994476, Length=214, Percent_Identity=26.1682242990654, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71994472, Length=214, Percent_Identity=26.1682242990654, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17567369, Length=206, Percent_Identity=27.1844660194175, Blast_Score=76, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322401, Length=388, Percent_Identity=22.1649484536082, Blast_Score=86, Evalue=8e-18,
Organism=Drosophila melanogaster, GI18859735, Length=365, Percent_Identity=24.3835616438356, Blast_Score=85, Evalue=7e-17,
Organism=Drosophila melanogaster, GI28573069, Length=387, Percent_Identity=21.7054263565891, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24646114, Length=387, Percent_Identity=21.7054263565891, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573067, Length=387, Percent_Identity=21.7054263565891, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573065, Length=387, Percent_Identity=21.7054263565891, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 40875; Mature: 40744

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQDIAPFQAISISRRAHELKAAGQRILHMEFGQPSTGAPKAAIAAAHGVLDSEAMGYWE
CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHH
SLPLKERICQHYQDSYGVSLSPRRLVITCGASPALVLALATAFSPGDRIAIARPGYVAYR
CCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCCHHHHH
NTLRALNMEPVEIACGAEVRFQLSAAALEALEPAPMGVIIASPANPTGTIIPKEELAAIA
HHHHHCCCCCEEEECCCCEEEEEHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
EVCARRGIQIISDEIYHGLTYGPKIHSMLEFAPSAYIVNSFSKYFSMAGWRLGWLVSPEA
HHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCC
GVARTGAYIGNLFLTAPSLAQHAGLVAMDSREELEGHLDVYRRNRELLLGALPGLGLEKI
CCHHHHHHHHHHEEECCHHHHHCCEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCHHHC
APPDGAFYIYADVSRFTDDSLGFCLKLLEETGVATAPGVDFDPVEGGRFMRFSFALSTPE
CCCCCCEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCH
IEEALARLEPWFKAQPRR
HHHHHHHCCHHHCCCCCC
>Mature Secondary Structure 
GQDIAPFQAISISRRAHELKAAGQRILHMEFGQPSTGAPKAAIAAAHGVLDSEAMGYWE
CCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHH
SLPLKERICQHYQDSYGVSLSPRRLVITCGASPALVLALATAFSPGDRIAIARPGYVAYR
CCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCCHHHHH
NTLRALNMEPVEIACGAEVRFQLSAAALEALEPAPMGVIIASPANPTGTIIPKEELAAIA
HHHHHCCCCCEEEECCCCEEEEEHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
EVCARRGIQIISDEIYHGLTYGPKIHSMLEFAPSAYIVNSFSKYFSMAGWRLGWLVSPEA
HHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCC
GVARTGAYIGNLFLTAPSLAQHAGLVAMDSREELEGHLDVYRRNRELLLGALPGLGLEKI
CCHHHHHHHHHHEEECCHHHHHCCEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCHHHC
APPDGAFYIYADVSRFTDDSLGFCLKLLEETGVATAPGVDFDPVEGGRFMRFSFALSTPE
CCCCCCEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCH
IEEALARLEPWFKAQPRR
HHHHHHHCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]