Click here to switch to the map view.

The map label for this gene is ygiD [H]

Identifier: 114797833

GI number: 114797833

Start: 972493

End: 973269

Strand: Reverse

Name: ygiD [H]

Synonym: HNE_0958

Alternate gene names: 114797833

Gene position: 973269-972493 (Counterclockwise)

Preceding gene: 114797232

Following gene: 114798256

Centisome position: 26.27

GC content: 66.41

Gene sequence:

>777_bases
ATGACCCCGCCCATTTTCGTGTCCCATGGATCGCCCACGCTCATTTTTGATGACGTGCCCGCTCGCGACTTCCTCACCCA
GCTTGGCAAGACATTGCCGCGCCCGAAGGCCATTCTGGTAGCGTCTGCGCATTGGGAAACGATTGCGCCCCGCATCACCG
CGTCGCCTGCCCCGCCGACGATCCATGATTATGGCGGCTTTCCCGAGGTGATGTACCAGCAGCAATACCCCGCGCCGGGC
GACCCGGCGCTAGCCGCGCGCATCAAGGCTCTGCTGGATGGGGCGGGCATTTCCGCCACGCTGGACCCGGCCCGCGGTCT
TGACCATGGCGCCTGGGTGCCGCTGAAGCTCGCCTGGCCGGAGGCGGATATTCCGGTGCTCCAGCTCTCGCTGCAAACGC
ATCTGGGGCCGGCGCATCATCTGAAGCTGGGCGAGGCCTTGCGCCCGCTGGCCGAAGAGGGTGTGCTGATCCTGGGCAGT
GGCAGCCTCACCCATGACCTGCGCAGCGTCAGCTGGCGCGGGCCAAATGCGGAGCCTGACTGGGTGAAATCCTTCGGGGA
CTGGGTGAACACGGCGCTGGCGGAGGGGCGCGTGGACGATCTGGTCAACTATCGCCGCCTCGCCCCCAACGCCGCCCGCA
ACCATCCGAGCGAGGAGCATTTCCTGCCCCTCTTCGTGGCGCTCGGCGCGGCAGGCGCCGGGGCAAAGATGGAGCGGCTG
CACACATCGGTTACGTTCAGCGTGCTGAGGATGGATACGTTCGCGTTTGCGGGGTAG

Upstream 100 bases:

>100_bases
TCATGCAAGCTCAGCATAACTGTCAGCCCGGCACGGGCCTGTCATTGGCAGGTGACCGCTCTTACCTTGGGGGAAGCAAT
ACTGAAGGAGGCATCCCCGC

Downstream 100 bases:

>100_bases
GCCCTAAAGCCTCCTCTCCCAAGAGAGAGGGGTTCTGGGCAAGACTTATCCCTGCTGGTCCCGCCCGCGCGCGGTCACCT
GCTTGCGGGCTTCTTCCACA

Product: extradiol-type ring-opening dioxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MTPPIFVSHGSPTLIFDDVPARDFLTQLGKTLPRPKAILVASAHWETIAPRITASPAPPTIHDYGGFPEVMYQQQYPAPG
DPALAARIKALLDGAGISATLDPARGLDHGAWVPLKLAWPEADIPVLQLSLQTHLGPAHHLKLGEALRPLAEEGVLILGS
GSLTHDLRSVSWRGPNAEPDWVKSFGDWVNTALAEGRVDDLVNYRRLAPNAARNHPSEEHFLPLFVALGAAGAGAKMERL
HTSVTFSVLRMDTFAFAG

Sequences:

>Translated_258_residues
MTPPIFVSHGSPTLIFDDVPARDFLTQLGKTLPRPKAILVASAHWETIAPRITASPAPPTIHDYGGFPEVMYQQQYPAPG
DPALAARIKALLDGAGISATLDPARGLDHGAWVPLKLAWPEADIPVLQLSLQTHLGPAHHLKLGEALRPLAEEGVLILGS
GSLTHDLRSVSWRGPNAEPDWVKSFGDWVNTALAEGRVDDLVNYRRLAPNAARNHPSEEHFLPLFVALGAAGAGAKMERL
HTSVTFSVLRMDTFAFAG
>Mature_257_residues
TPPIFVSHGSPTLIFDDVPARDFLTQLGKTLPRPKAILVASAHWETIAPRITASPAPPTIHDYGGFPEVMYQQQYPAPGD
PALAARIKALLDGAGISATLDPARGLDHGAWVPLKLAWPEADIPVLQLSLQTHLGPAHHLKLGEALRPLAEEGVLILGSG
SLTHDLRSVSWRGPNAEPDWVKSFGDWVNTALAEGRVDDLVNYRRLAPNAARNHPSEEHFLPLFVALGAAGAGAKMERLH
TSVTFSVLRMDTFAFAG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=232, Percent_Identity=44.3965517241379, Blast_Score=182, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 27780; Mature: 27649

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPPIFVSHGSPTLIFDDVPARDFLTQLGKTLPRPKAILVASAHWETIAPRITASPAPPT
CCCCEEEECCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCEECCCCCCC
IHDYGGFPEVMYQQQYPAPGDPALAARIKALLDGAGISATLDPARGLDHGAWVPLKLAWP
CCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEECCHHCCCCCCCEEEEEEECC
EADIPVLQLSLQTHLGPAHHLKLGEALRPLAEEGVLILGSGSLTHDLRSVSWRGPNAEPD
CCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCCCCCHH
WVKSFGDWVNTALAEGRVDDLVNYRRLAPNAARNHPSEEHFLPLFVALGAAGAGAKMERL
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHCCCCCCHHHHHH
HTSVTFSVLRMDTFAFAG
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TPPIFVSHGSPTLIFDDVPARDFLTQLGKTLPRPKAILVASAHWETIAPRITASPAPPT
CCCEEEECCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCEECCCCCCC
IHDYGGFPEVMYQQQYPAPGDPALAARIKALLDGAGISATLDPARGLDHGAWVPLKLAWP
CCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEECCHHCCCCCCCEEEEEEECC
EADIPVLQLSLQTHLGPAHHLKLGEALRPLAEEGVLILGSGSLTHDLRSVSWRGPNAEPD
CCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCCCCCHH
WVKSFGDWVNTALAEGRVDDLVNYRRLAPNAARNHPSEEHFLPLFVALGAAGAGAKMERL
HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHCCCCCCHHHHHH
HTSVTFSVLRMDTFAFAG
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]