| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is murC
Identifier: 114797447
GI number: 114797447
Start: 3190739
End: 3192163
Strand: Reverse
Name: murC
Synonym: HNE_3022
Alternate gene names: 114797447
Gene position: 3192163-3190739 (Counterclockwise)
Preceding gene: 114798779
Following gene: 114799959
Centisome position: 86.16
GC content: 61.68
Gene sequence:
>1425_bases ATGACGACCCCCACACCCTTTCCTGTTGGCCCTGCCCATATAGTCGGCATTGGCGGCATCGGTATGTCTGGCATTGCCGA CGTCATGCTCACCATGGGTTATGAGGTTCAGGGCTCGGATGTTTCTGACAGCGCCAATGTCGAGCGCCTGCGCGCGCGCG GCGTGAAAGTGTTCATCGGGCACAAGCCTGAGAATGTGGTGGGCGCCGGCACGGTCATCATTTCTACCGCCATCCGGCGG GACAATCCCGAAGTTCAGGCTGCGCGCGCGGCAGGCATTCCCGTCGTGCGCCGGGCCAACATGCTGGCGGAAATCACGCG CCTCAAATACACCGTGTGCGTCGCGGGCACGCATGGCAAGACAACCACGACCTCGCTTGTCGCCTGCCTGCTGGATGGCG CGGGCATTGATCCGACGGTGATCAATGGCGGCATCATTCATGCTTATGGCTCGAACTACAAAGCGGGCGAAAGCGATTGG ATGGTGGTCGAAAGTGATGAGAGCGATGGTACGTTCGCTAAGCTCCACCCGACCTGTGCCATCGTCACCAATATCGACCC CGAGCACATGGACCATTACGGCACCATGGATAAGCTGCGCGAAGCGTTCGATACGTTCGTTGAAAATCTGCCTTTCTATG GATTCGCCGTTCTGTGCACGGATCATCCGGAAGTGCAGGCGCTGGCCGCCCGCGTGACTGATCGTCGCCGCATCACCTAT GGCTTCAACCTCCAGGCCGATGTGCGCGCCGTCAATCTGAGTACTGATCTCAAGGGCGCGCATTTCGATGTCGAAATCCG CCGGGGGGCGGGCGAGGCGCCGCGCCGTATCGAGGGGCTGACGCTTCCGATGGCAGGGGAGCATAATGTCCAGAACGCAC TGGCCGCTATCACCGTGGCATTGGAACTCGGCGCGAGTGACGAGCAGATCAGCGCGTCGCTGGCGAGTTTTGGCGGCGTG AAGCGGCGCTTTACACCCGTGGGCGAATGGCTGCCGGCTGCCGGCGGCGAGCCGGTCAAGATTATCGATGATTATGGCCA TCACCCGGTGGAGATTGCCGCCGTGCTGAAAGCGGCCCGCGCGATGCAGGCCGACCGCACAGTGATCGCTGTTTGCCAGC CTCACCGCTATTCGCGCCTGAAAGACCTGTTTGAAGACTTCTCCCGCTGTTTTGACCAGGCTGACCATGTGCTGGTCGCG CCGGTGTATGAAGCAGGCGAGACGCCGATTCCCGGTATTACCCATGAGACCCTTGTCCGCTCGATCCAGCGTAACGGTCA TCGCAGCGCCCGCGCGCTGCCATCGCTGGCTGAGCTTCCAGAGGTGGTGAAGACGCTGGCAGGGCCGGGCGCGATGGTGG TCTGCCTCGGGGCAGGGGACATTACCCGTTATGCCGGAGAGCTTGAGGCCAGGCTCAAGGGCTGA
Upstream 100 bases:
>100_bases GGGCCGGTTGGCGCTGATCATTGGTGTGATGCTGCTGGTTGCGATCGTCGGCCTGTTCATGTCTCTGACGCGGCGAACGA TGTAGGATTCAAGGTTTCCC
Downstream 100 bases:
>100_bases CGCAAGGTCACAGACAAAACCACCTTCCGCTTTATGGATTAGCGTCTAGTCTCGCCAAACAGACGCGCGGGCACACGCGC CGGGAGGATGCGAATGGCTC
Product: UDP-N-acetylmuramate--L-alanine ligase
Products: NA
Alternate protein names: UDP-N-acetylmuramoyl-L-alanine synthetase
Number of amino acids: Translated: 474; Mature: 473
Protein sequence:
>474_residues MTTPTPFPVGPAHIVGIGGIGMSGIADVMLTMGYEVQGSDVSDSANVERLRARGVKVFIGHKPENVVGAGTVIISTAIRR DNPEVQAARAAGIPVVRRANMLAEITRLKYTVCVAGTHGKTTTTSLVACLLDGAGIDPTVINGGIIHAYGSNYKAGESDW MVVESDESDGTFAKLHPTCAIVTNIDPEHMDHYGTMDKLREAFDTFVENLPFYGFAVLCTDHPEVQALAARVTDRRRITY GFNLQADVRAVNLSTDLKGAHFDVEIRRGAGEAPRRIEGLTLPMAGEHNVQNALAAITVALELGASDEQISASLASFGGV KRRFTPVGEWLPAAGGEPVKIIDDYGHHPVEIAAVLKAARAMQADRTVIAVCQPHRYSRLKDLFEDFSRCFDQADHVLVA PVYEAGETPIPGITHETLVRSIQRNGHRSARALPSLAELPEVVKTLAGPGAMVVCLGAGDITRYAGELEARLKG
Sequences:
>Translated_474_residues MTTPTPFPVGPAHIVGIGGIGMSGIADVMLTMGYEVQGSDVSDSANVERLRARGVKVFIGHKPENVVGAGTVIISTAIRR DNPEVQAARAAGIPVVRRANMLAEITRLKYTVCVAGTHGKTTTTSLVACLLDGAGIDPTVINGGIIHAYGSNYKAGESDW MVVESDESDGTFAKLHPTCAIVTNIDPEHMDHYGTMDKLREAFDTFVENLPFYGFAVLCTDHPEVQALAARVTDRRRITY GFNLQADVRAVNLSTDLKGAHFDVEIRRGAGEAPRRIEGLTLPMAGEHNVQNALAAITVALELGASDEQISASLASFGGV KRRFTPVGEWLPAAGGEPVKIIDDYGHHPVEIAAVLKAARAMQADRTVIAVCQPHRYSRLKDLFEDFSRCFDQADHVLVA PVYEAGETPIPGITHETLVRSIQRNGHRSARALPSLAELPEVVKTLAGPGAMVVCLGAGDITRYAGELEARLKG >Mature_473_residues TTPTPFPVGPAHIVGIGGIGMSGIADVMLTMGYEVQGSDVSDSANVERLRARGVKVFIGHKPENVVGAGTVIISTAIRRD NPEVQAARAAGIPVVRRANMLAEITRLKYTVCVAGTHGKTTTTSLVACLLDGAGIDPTVINGGIIHAYGSNYKAGESDWM VVESDESDGTFAKLHPTCAIVTNIDPEHMDHYGTMDKLREAFDTFVENLPFYGFAVLCTDHPEVQALAARVTDRRRITYG FNLQADVRAVNLSTDLKGAHFDVEIRRGAGEAPRRIEGLTLPMAGEHNVQNALAAITVALELGASDEQISASLASFGGVK RRFTPVGEWLPAAGGEPVKIIDDYGHHPVEIAAVLKAARAMQADRTVIAVCQPHRYSRLKDLFEDFSRCFDQADHVLVAP VYEAGETPIPGITHETLVRSIQRNGHRSARALPSLAELPEVVKTLAGPGAMVVCLGAGDITRYAGELEARLKG
Specific function: Cell wall formation
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family
Homologues:
Organism=Escherichia coli, GI1786279, Length=466, Percent_Identity=42.4892703862661, Blast_Score=317, Evalue=7e-88, Organism=Escherichia coli, GI1790680, Length=465, Percent_Identity=28.6021505376344, Blast_Score=135, Evalue=5e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MURC_HYPNA (Q0BXU4)
Other databases:
- EMBL: CP000158 - RefSeq: YP_761699.1 - ProteinModelPortal: Q0BXU4 - SMR: Q0BXU4 - STRING: Q0BXU4 - GeneID: 4288567 - GenomeReviews: CP000158_GR - KEGG: hne:HNE_3022 - NMPDR: fig|228405.5.peg.2897 - TIGR: HNE_3022 - eggNOG: COG0773 - HOGENOM: HBG476594 - OMA: YQPHRYS - PhylomeDB: Q0BXU4 - ProtClustDB: PRK00421 - BioCyc: HNEP81032:HNE_3022-MONOMER - GO: GO:0005737 - HAMAP: MF_00046 - InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR016040 - InterPro: IPR005758 - Gene3D: G3DSA:3.90.190.20 - Gene3D: G3DSA:3.40.1190.10 - Gene3D: G3DSA:3.40.50.720 - TIGRFAMs: TIGR01082
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M; SSF53244 Mur_ligase_C; SSF53623 Mur_ligase_cen
EC number: =6.3.2.8
Molecular weight: Translated: 50685; Mature: 50554
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPTPFPVGPAHIVGIGGIGMSGIADVMLTMGYEVQGSDVSDSANVERLRARGVKVFIG CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHCCEEEEEC HKPENVVGAGTVIISTAIRRDNPEVQAARAAGIPVVRRANMLAEITRLKYTVCVAGTHGK CCCCCCCCCCCEEEEHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHEEEEEEEECCCCC TTTTSLVACLLDGAGIDPTVINGGIIHAYGSNYKAGESDWMVVESDESDGTFAKLHPTCA CHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCCCEEEEECCCCCCCEEEECCEEE IVTNIDPEHMDHYGTMDKLREAFDTFVENLPFYGFAVLCTDHPEVQALAARVTDRRRITY EEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCEEEEE GFNLQADVRAVNLSTDLKGAHFDVEIRRGAGEAPRRIEGLTLPMAGEHNVQNALAAITVA ECCCEECEEEEEECCCCCCCEEEEEEECCCCCCCCHHCCEECCCCCCCCHHHHHHHHHEE LELGASDEQISASLASFGGVKRRFTPVGEWLPAAGGEPVKIIDDYGHHPVEIAAVLKAAR EECCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHH AMQADRTVIAVCQPHRYSRLKDLFEDFSRCFDQADHVLVAPVYEAGETPIPGITHETLVR HHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCHHHHHH SIQRNGHRSARALPSLAELPEVVKTLAGPGAMVVCLGAGDITRYAGELEARLKG HHHHCCCHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC >Mature Secondary Structure TTPTPFPVGPAHIVGIGGIGMSGIADVMLTMGYEVQGSDVSDSANVERLRARGVKVFIG CCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHCCEEEEEC HKPENVVGAGTVIISTAIRRDNPEVQAARAAGIPVVRRANMLAEITRLKYTVCVAGTHGK CCCCCCCCCCCEEEEHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHEEEEEEEECCCCC TTTTSLVACLLDGAGIDPTVINGGIIHAYGSNYKAGESDWMVVESDESDGTFAKLHPTCA CHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCCCEEEEECCCCCCCEEEECCEEE IVTNIDPEHMDHYGTMDKLREAFDTFVENLPFYGFAVLCTDHPEVQALAARVTDRRRITY EEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCEEEEE GFNLQADVRAVNLSTDLKGAHFDVEIRRGAGEAPRRIEGLTLPMAGEHNVQNALAAITVA ECCCEECEEEEEECCCCCCCEEEEEEECCCCCCCCHHCCEECCCCCCCCHHHHHHHHHEE LELGASDEQISASLASFGGVKRRFTPVGEWLPAAGGEPVKIIDDYGHHPVEIAAVLKAAR EECCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHH AMQADRTVIAVCQPHRYSRLKDLFEDFSRCFDQADHVLVAPVYEAGETPIPGITHETLVR HHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCHHHHHH SIQRNGHRSARALPSLAELPEVVKTLAGPGAMVVCLGAGDITRYAGELEARLKG HHHHCCCHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA