| Definition | Shewanella frigidimarina NCIMB 400, complete genome. |
|---|---|
| Accession | NC_008345 |
| Length | 4,845,257 |
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Identifier: 114563820
GI number:
Start: 3184412
End: 3186556
Strand: Reverse
Name: Not Available
Synonym: Sfri_2654
Alternate gene names: NA
Gene position: NA
Preceding gene: 114563823
Following gene: 114563819
Centisome position: NA
GC content: NA
Gene sequence:
>2145_bases ATGCACAAGAATACGATAAGCCAAGAGGTTAATGAGTTAGTTTTAGATGCGACTAATGTTGGCGTCTGGGATTGGCGTGT TGAAAATGATGGTCTTGTTTGTAATGAACGTTGGGCTGAGATTATAGGGTATACCTTATCGGAGTTAATGCCTGTTGATT ACCAAACTTGGCTAGATGTATTACACCCAGATGATTTGCCTAAGGCAATTAAAAATTATGATTACCACTGTCAAGGCCAA AGCGAACTTTGTGAGTTAGAAGTTCGTTTAAAACACAAAAGCGGTCATTATGTTTGGGTATTGTCTACAGGTAAAGCTAT TGCATGGGATGTTGAAGGCAAACCGACACGAATGATTGGCATGCACCAAGAAATAACCTTTCGTAAGAGGCAGGAAGAAC TACTTGCAACCACAACCGAGTTATTGAGAGAATCTCAAGAGATAGGCAAGCTAGGTGGCTGGCAACTCAACTTGCATAAC GGTGACTTGATTTGGACAGATGAAACTTACCGAATTTATGAAACAACTCCGCAAGAATATATTCCTACCGTTGAAATGGG GGTAAGTTATTTATTACCCGATTCCAAAAAATTATTCCAAGAAGCGCTTGATGCTGCTATTCAACTTGGCGAAGAGTATG ACTTAGAGCTTGAAACTTATACCACGAAAGGACAAAAGATTGACGTTAGAACGACCTGTCATGTTACATATGTCGATGGT GTTGCTGAAAAATTAAGTGGTATATTTCAAGACATTACCGACGAAAAAAATAATCAACGCAAACTTGAAAAAAGTAATCA GGTATTAAAAGAAGTAAATGAGAAGTTAAAGTTTGCAGCGAATTATGATCCACTTACACATTTGCCAAACAGAAATTTGT TAGCTGATCGAATGCAGCAAGCGCTTATCAAAGCGCAGCGTAATAGCAAACAAATAGCTATAGCCTTCCTAGACTTGGAT GGCTTTAAAGAGGTAAATGATGCTTACGGTCATGATATAGGAGATGAGTTCCTTTGCCTTATTGCAAATAGGTTTAAAAC TGCAATACGAGAGGATGATACTCTTGCCAGGTTTGGTGGCGATGAGTTTGTTTTGATTCTTGATGATTTAGACAGTCATC AAGAAGCATCAGAAATATTACAGCGAATACTTTCTTCAATTACAGAAATATTTATTATTGAAAATAAGCGTCTTTCTATA ACGGTGAGTATTGGAGTGACGTTTTTCCCGCAGGATAATAGTCACGCAGACATACTTATTCGTCATGCTGATCAGGCTAT GTATAGGGCTAAAGAGCAGGGAAAGAATTGCATTCATGAATTTGACTTTGAAAATGATGTAGCGATAAAACTCCAGTATC GAGAGTTAGAATACATAATCAATGGATTTAATAACAATGAGTTTTTGTTATTCTACCAACCAAAAATCAATATGGAAAGT AATGAAATCATAGGTTTAGAGGCCCTTATTCGTTGGCAACATCCGACAGAAGGTCTTTTGTCACCATTTCGCTTTTTGCC CTACATTGAAGAAGAACCTCTAGCAATTGAGTTAGGTAAATGGGTAATTGACCAAGCAATAAAGCAGCATAATGAATGGC GACGCTTAGGAATAGTTATACCTATCAGTGTCAATGTCAGTCCATTACAACTTCAGCATGAAGATTTCATTAAACAATTA AATGAAATCTTATTTCTCAACACTAGTTTTCAAGCGGGTCAGCTTGAATTTGAAATTTTAGAATCCAGTATTATTAAAGA TACTCAGCACATCGCTGAGGTTATTAGTCAATGTAAACAGTTAGGGATACGTTTTTCGTTAGATGATTTTGGTACGGGGT TTTCATCTTTAAGCTATTTGAGAAAGTTAAAGACTGATGTTATAAAAATAGATCAATCTTTTGTCATTGACATGTTAGAT GATATGGATGATCAAGCCATTGTAAAAAGTGTCATTGAATTATCGAAGACCTTCGGTCGTTCTGTGATAGCAGAGGGGGT TGAAACCCAAGAGCATGGTCGGCAATTACTTAAAATGGGATGTCAATTAGCACAAGGTTTCGGTATAGCAAGACCAATGC CAGCAAGTTCAATCCCTGAGTGGATTAATTTATGGAATGCGTCTCCTCCTTGGATTTGTAAATGA
Upstream 100 bases:
>100_bases AAACAGTAATAAGTAGACTTTTGTGGTTAATTAAAAGGCAAAAGTTCTTATTTACAAAAGCTGGTTAAATCCATAATTTT TCCCAAACAGTATAAAGGCC
Downstream 100 bases:
>100_bases GCTTTATGAGTTAGTCTTTAGTGTATGTTGATCTTTGTGTGAAAGCATATGAAAGCTATTTTTCAACAACTGTAACCGTC ATCAGCGCTTATAAAGTAGT
Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>714_residues MHKNTISQEVNELVLDATNVGVWDWRVENDGLVCNERWAEIIGYTLSELMPVDYQTWLDVLHPDDLPKAIKNYDYHCQGQ SELCELEVRLKHKSGHYVWVLSTGKAIAWDVEGKPTRMIGMHQEITFRKRQEELLATTTELLRESQEIGKLGGWQLNLHN GDLIWTDETYRIYETTPQEYIPTVEMGVSYLLPDSKKLFQEALDAAIQLGEEYDLELETYTTKGQKIDVRTTCHVTYVDG VAEKLSGIFQDITDEKNNQRKLEKSNQVLKEVNEKLKFAANYDPLTHLPNRNLLADRMQQALIKAQRNSKQIAIAFLDLD GFKEVNDAYGHDIGDEFLCLIANRFKTAIREDDTLARFGGDEFVLILDDLDSHQEASEILQRILSSITEIFIIENKRLSI TVSIGVTFFPQDNSHADILIRHADQAMYRAKEQGKNCIHEFDFENDVAIKLQYRELEYIINGFNNNEFLLFYQPKINMES NEIIGLEALIRWQHPTEGLLSPFRFLPYIEEEPLAIELGKWVIDQAIKQHNEWRRLGIVIPISVNVSPLQLQHEDFIKQL NEILFLNTSFQAGQLEFEILESSIIKDTQHIAEVISQCKQLGIRFSLDDFGTGFSSLSYLRKLKTDVIKIDQSFVIDMLD DMDDQAIVKSVIELSKTFGRSVIAEGVETQEHGRQLLKMGCQLAQGFGIARPMPASSIPEWINLWNASPPWICK
Sequences:
NA
Specific function: NA
COG id: COG5001
COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA