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The map label for this gene is cycH [H]

Identifier: 114331621

GI number: 114331621

Start: 1720050

End: 1721393

Strand: Reverse

Name: cycH [H]

Synonym: Neut_1635

Alternate gene names: 114331621

Gene position: 1721393-1720050 (Counterclockwise)

Preceding gene: 114331622

Following gene: 114331620

Centisome position: 64.69

GC content: 45.61

Gene sequence:

>1344_bases
ATGACGACGGTATTTTGGGTTATAGTCGGTATATTTATCATGGCAGCATTGCTGTTTATTATACCTGTATTGCTGAGAAA
TAAAAAAAACGAGCTTCAAGATCAAGTTGAACGTCAGGCTGCAAATATTACTATTTACCGTGATCAGCTTGCGGAGCTGG
ATCGTGATCTACTTGACGATGTTCTTTCCAAGGAACAGCATGAACTCAGCAAGCAGGAATTACAAAAGCGAATGTTGCAG
GATTTATCTGAAGATGATGAAACTGTTCGCGTAACTCCTGTCAATCGTCATGGCACTATTGTGAGTGTTATTGTTGCTCT
GGCAGTTCCACTTGCTGCCATCTACCTTTATCTGGTAATTGGAGATACTCGCGGGCTGCTTCCGCAATCTCAACTGGCTA
ATGCTACGCAGTTTCAGGGGGGTGATGCGGAAGGAATGCCGCCGGATCATGCTGAGATCAAGGCAATGGTTGACAGTCTT
GCTGCCCGTCTTAAGGATAATCCGGACGATATAGAAGGCTGGGTGATGCTTGGACGTTCTTACATAATTATGGAACGTTT
TGATGAAGCTGGCGCAGTCTATGCCAAACTGGTTCAAATGGCTCCGGATAACCCCCAATTCTTGAGTGATTATGCCGATA
TGCTGGCCATAACGAATAATGGCAACTTACAGGGTAAACCTGCCGAGTTGATCAGCAAGGCGCTTGATATCGATCCGGAT
TATCCTAAGGCACTGGCTTTAGCCGGTACACTTGAATTTGAGCGGGAAAAGTTTGATCAGGCAGTTACTTACTGGGAGCG
CCTGTTGAATGTTATACCCGCCGAGGCAAAAGATTCGAAATTTTATAAATCTGTGAGTGACAGTATCGCCCAGGCTAAAT
TTCTGGCCATGAAAGGTAGAAATGAATCTATTCCTGTACAGCTGGCGCAGAATTCAAATGTGGAGAGTGATGTGCCTGTG
ACATTGTCTTCTGGTGAGAAGCAGGAAGCTGCTACGGGCATACCAAGCGTTTCTGGCTCGGTTACTCTGGATGCCTCATT
GGCATCAAAAGTTTCGCCTGATGATACACTTTTCGTTTTTGCAAGGGCCAGCCAAGGGCCAAAGATGCCATTGGCTATTT
TGAGGCTGCATGCTAAGGATCTTCCAGTTTCGTTTAAACTTGATGACAACATGGCTATGACCCCCGCGATGAAGCTCTCA
AGCTTTCCAGAGGTGGTGGTGGGGGCGAGAATCAGCAAAACCGGACAGGCTATTCCCTCCAGTGGAGATCTTGAGGGTCA
CAGCATTCCTGTGAAAATTGGTGAAGAAAATATTTCTATTACAATTGATCATATTGTCCCGTAA

Upstream 100 bases:

>100_bases
GTCGTCGTATTCGAATAAAGGAAAACGAGGTACCACTGACAGAAAATCAGCGTTTACAGGCTGAATCTCTTATTAAAGAA
ATGGACAAGGATCAAAGTAT

Downstream 100 bases:

>100_bases
ATTTAATTTGTTGATGAGGGGTATATATTTGTATGCCGGTTGATTTGATCCCTGATTTTGAGTTGGCTTCCACGGGTAAC
AAACAGTTTCGTCTGTCAGG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MTTVFWVIVGIFIMAALLFIIPVLLRNKKNELQDQVERQAANITIYRDQLAELDRDLLDDVLSKEQHELSKQELQKRMLQ
DLSEDDETVRVTPVNRHGTIVSVIVALAVPLAAIYLYLVIGDTRGLLPQSQLANATQFQGGDAEGMPPDHAEIKAMVDSL
AARLKDNPDDIEGWVMLGRSYIIMERFDEAGAVYAKLVQMAPDNPQFLSDYADMLAITNNGNLQGKPAELISKALDIDPD
YPKALALAGTLEFEREKFDQAVTYWERLLNVIPAEAKDSKFYKSVSDSIAQAKFLAMKGRNESIPVQLAQNSNVESDVPV
TLSSGEKQEAATGIPSVSGSVTLDASLASKVSPDDTLFVFARASQGPKMPLAILRLHAKDLPVSFKLDDNMAMTPAMKLS
SFPEVVVGARISKTGQAIPSSGDLEGHSIPVKIGEENISITIDHIVP

Sequences:

>Translated_447_residues
MTTVFWVIVGIFIMAALLFIIPVLLRNKKNELQDQVERQAANITIYRDQLAELDRDLLDDVLSKEQHELSKQELQKRMLQ
DLSEDDETVRVTPVNRHGTIVSVIVALAVPLAAIYLYLVIGDTRGLLPQSQLANATQFQGGDAEGMPPDHAEIKAMVDSL
AARLKDNPDDIEGWVMLGRSYIIMERFDEAGAVYAKLVQMAPDNPQFLSDYADMLAITNNGNLQGKPAELISKALDIDPD
YPKALALAGTLEFEREKFDQAVTYWERLLNVIPAEAKDSKFYKSVSDSIAQAKFLAMKGRNESIPVQLAQNSNVESDVPV
TLSSGEKQEAATGIPSVSGSVTLDASLASKVSPDDTLFVFARASQGPKMPLAILRLHAKDLPVSFKLDDNMAMTPAMKLS
SFPEVVVGARISKTGQAIPSSGDLEGHSIPVKIGEENISITIDHIVP
>Mature_446_residues
TTVFWVIVGIFIMAALLFIIPVLLRNKKNELQDQVERQAANITIYRDQLAELDRDLLDDVLSKEQHELSKQELQKRMLQD
LSEDDETVRVTPVNRHGTIVSVIVALAVPLAAIYLYLVIGDTRGLLPQSQLANATQFQGGDAEGMPPDHAEIKAMVDSLA
ARLKDNPDDIEGWVMLGRSYIIMERFDEAGAVYAKLVQMAPDNPQFLSDYADMLAITNNGNLQGKPAELISKALDIDPDY
PKALALAGTLEFEREKFDQAVTYWERLLNVIPAEAKDSKFYKSVSDSIAQAKFLAMKGRNESIPVQLAQNSNVESDVPVT
LSSGEKQEAATGIPSVSGSVTLDASLASKVSPDDTLFVFARASQGPKMPLAILRLHAKDLPVSFKLDDNMAMTPAMKLSS
FPEVVVGARISKTGQAIPSSGDLEGHSIPVKIGEENISITIDHIVP

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=151, Percent_Identity=29.1390728476821, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48897; Mature: 48765

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVFWVIVGIFIMAALLFIIPVLLRNKKNELQDQVERQAANITIYRDQLAELDRDLLDD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHH
VLSKEQHELSKQELQKRMLQDLSEDDETVRVTPVNRHGTIVSVIVALAVPLAAIYLYLVI
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
GDTRGLLPQSQLANATQFQGGDAEGMPPDHAEIKAMVDSLAARLKDNPDDIEGWVMLGRS
CCCCCCCCHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
YIIMERFDEAGAVYAKLVQMAPDNPQFLSDYADMLAITNNGNLQGKPAELISKALDIDPD
EEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHCCCCC
YPKALALAGTLEFEREKFDQAVTYWERLLNVIPAEAKDSKFYKSVSDSIAQAKFLAMKGR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
NESIPVQLAQNSNVESDVPVTLSSGEKQEAATGIPSVSGSVTLDASLASKVSPDDTLFVF
CCCCCEEEECCCCCCCCCCEEECCCCCHHHHCCCCCCCCCEEEEHHHHCCCCCCCEEEEE
ARASQGPKMPLAILRLHAKDLPVSFKLDDNMAMTPAMKLSSFPEVVVGARISKTGQAIPS
EECCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCHHHHCCHHCCCCCCCCC
SGDLEGHSIPVKIGEENISITIDHIVP
CCCCCCCEEEEEECCCCEEEEEECCCC
>Mature Secondary Structure 
TTVFWVIVGIFIMAALLFIIPVLLRNKKNELQDQVERQAANITIYRDQLAELDRDLLDD
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHH
VLSKEQHELSKQELQKRMLQDLSEDDETVRVTPVNRHGTIVSVIVALAVPLAAIYLYLVI
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
GDTRGLLPQSQLANATQFQGGDAEGMPPDHAEIKAMVDSLAARLKDNPDDIEGWVMLGRS
CCCCCCCCHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
YIIMERFDEAGAVYAKLVQMAPDNPQFLSDYADMLAITNNGNLQGKPAELISKALDIDPD
EEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHCCCCC
YPKALALAGTLEFEREKFDQAVTYWERLLNVIPAEAKDSKFYKSVSDSIAQAKFLAMKGR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
NESIPVQLAQNSNVESDVPVTLSSGEKQEAATGIPSVSGSVTLDASLASKVSPDDTLFVF
CCCCCEEEECCCCCCCCCCEEECCCCCHHHHCCCCCCCCCEEEEHHHHCCCCCCCEEEEE
ARASQGPKMPLAILRLHAKDLPVSFKLDDNMAMTPAMKLSSFPEVVVGARISKTGQAIPS
EECCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCHHHHCCHHCCCCCCCCC
SGDLEGHSIPVKIGEENISITIDHIVP
CCCCCCCEEEEEECCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]