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The map label for this gene is rlpA [C]

Identifier: 114331574

GI number: 114331574

Start: 1667537

End: 1668490

Strand: Reverse

Name: rlpA [C]

Synonym: Neut_1587

Alternate gene names: 114331574

Gene position: 1668490-1667537 (Counterclockwise)

Preceding gene: 114331575

Following gene: 114331563

Centisome position: 62.7

GC content: 46.44

Gene sequence:

>954_bases
ATGAAACCAAATTCTTATTTCCATTCTGATATTCCAAGCAGAAGTGCACTATTTGTTTTTTCTGCTGTTGTCATATTATT
TATGCTCTCAGCTTGCAGTAATACTCCCAGAGTAGGGCAATCATCCGTACAAGCACACACGAAGAGCTCATCTATTGCGG
GAAGTGGAGGAGGGGGCTACTATCTCGATGATGGGCCGGAAGAAAATCCCCCGGCTAATCTTGATGCTGTTCCTGATGCA
GTTCCCCGGGTTGAGCCTTTAAAAACAGCAACGATGCGCCCTTATGTTGCTCTTGGTAAAACCTACACACCGATGACCAC
ACTCAAGCCTTACAAGGAACGCGGACAGGCTTCCTGGTACGGCAAGCGCTATCACGGTCAACGTACAGCCTCAGGTGATG
TTTACGATATGTATTCCATGACGGCCGCCCACCCAACCTTGCCCATACCCAGCTATGTTCGTGTTACAAACTTACAGAAT
GGAAGCTCAGTAATTGTTCGTATTAATGATAGAGGACCTTTCCTGGAAAGTCGCCTGATTGATCTGTCTTATGTTGCGGC
TCATAAGCTCGGTGTCCTGGCAAATGGCAGTGCCCGGGTAGAGGTGGAAAGTATTATTCCGGATCGTTTCAGCAGTCCTT
ATTCTGTGACAACACAATCCCAACCAGATATGGCTCCAAAGAGGGTGTCCAGTAACGATACTGGTAAATTTTATTTACAG
CTTGCCGCGTTTGGCTCTGCCCATAATGCTCAATCTTATCTAATACAATTAAGATCCAATTTCCCCTCAATCACTCAACA
GGCCTATATCAATCAAACAAGTGGTTTGCACAAAATATTTGTAGGGCCGTTCCCTGATTTGGAGGCTGCTACCCGAACAG
CGAATACCATAAGCGCTTCGGGTTCTCCGAAGCCGATATTGGTTCCTCATACCTATATGGCCGGCTCGGAATAA

Upstream 100 bases:

>100_bases
CTCATCAGTTATGGAGGCACTTCTATGGTCACCATACTGCTGGGATTTGGAATTTTAATGAGCATACATACTCATCCAAA
ACTTGTTAAGACTTAAAAAT

Downstream 100 bases:

>100_bases
GTATCCCGGATACTGTAGAAAGGCTGTCAGGAAAGAAATAGTGTTTGAGTCTATCACTGAGTGGTAGTAATGGTAAAAGG
AGAGAGTTAGGGTGTAAAGA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MKPNSYFHSDIPSRSALFVFSAVVILFMLSACSNTPRVGQSSVQAHTKSSSIAGSGGGGYYLDDGPEENPPANLDAVPDA
VPRVEPLKTATMRPYVALGKTYTPMTTLKPYKERGQASWYGKRYHGQRTASGDVYDMYSMTAAHPTLPIPSYVRVTNLQN
GSSVIVRINDRGPFLESRLIDLSYVAAHKLGVLANGSARVEVESIIPDRFSSPYSVTTQSQPDMAPKRVSSNDTGKFYLQ
LAAFGSAHNAQSYLIQLRSNFPSITQQAYINQTSGLHKIFVGPFPDLEAATRTANTISASGSPKPILVPHTYMAGSE

Sequences:

>Translated_317_residues
MKPNSYFHSDIPSRSALFVFSAVVILFMLSACSNTPRVGQSSVQAHTKSSSIAGSGGGGYYLDDGPEENPPANLDAVPDA
VPRVEPLKTATMRPYVALGKTYTPMTTLKPYKERGQASWYGKRYHGQRTASGDVYDMYSMTAAHPTLPIPSYVRVTNLQN
GSSVIVRINDRGPFLESRLIDLSYVAAHKLGVLANGSARVEVESIIPDRFSSPYSVTTQSQPDMAPKRVSSNDTGKFYLQ
LAAFGSAHNAQSYLIQLRSNFPSITQQAYINQTSGLHKIFVGPFPDLEAATRTANTISASGSPKPILVPHTYMAGSE
>Mature_317_residues
MKPNSYFHSDIPSRSALFVFSAVVILFMLSACSNTPRVGQSSVQAHTKSSSIAGSGGGGYYLDDGPEENPPANLDAVPDA
VPRVEPLKTATMRPYVALGKTYTPMTTLKPYKERGQASWYGKRYHGQRTASGDVYDMYSMTAAHPTLPIPSYVRVTNLQN
GSSVIVRINDRGPFLESRLIDLSYVAAHKLGVLANGSARVEVESIIPDRFSSPYSVTTQSQPDMAPKRVSSNDTGKFYLQ
LAAFGSAHNAQSYLIQLRSNFPSITQQAYINQTSGLHKIFVGPFPDLEAATRTANTISASGSPKPILVPHTYMAGSE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=122, Percent_Identity=43.4426229508197, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 34333; Mature: 34333

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPNSYFHSDIPSRSALFVFSAVVILFMLSACSNTPRVGQSSVQAHTKSSSIAGSGGGGY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCE
YLDDGPEENPPANLDAVPDAVPRVEPLKTATMRPYVALGKTYTPMTTLKPYKERGQASWY
ECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCHHHCCCCCCC
GKRYHGQRTASGDVYDMYSMTAAHPTLPIPSYVRVTNLQNGSSVIVRINDRGPFLESRLI
HHHHCCCCCCCCCEEEHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHH
DLSYVAAHKLGVLANGSARVEVESIIPDRFSSPYSVTTQSQPDMAPKRVSSNDTGKFYLQ
HHHHHHHHHHEEEECCCCEEEEHHHCCHHCCCCEEEECCCCCCCCCHHCCCCCCCEEEEE
LAAFGSAHNAQSYLIQLRSNFPSITQQAYINQTSGLHKIFVGPFPDLEAATRTANTISAS
EEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCEEECC
GSPKPILVPHTYMAGSE
CCCCCEEECCCCCCCCC
>Mature Secondary Structure
MKPNSYFHSDIPSRSALFVFSAVVILFMLSACSNTPRVGQSSVQAHTKSSSIAGSGGGGY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCE
YLDDGPEENPPANLDAVPDAVPRVEPLKTATMRPYVALGKTYTPMTTLKPYKERGQASWY
ECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCHHHCCCCCCC
GKRYHGQRTASGDVYDMYSMTAAHPTLPIPSYVRVTNLQNGSSVIVRINDRGPFLESRLI
HHHHCCCCCCCCCEEEHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHH
DLSYVAAHKLGVLANGSARVEVESIIPDRFSSPYSVTTQSQPDMAPKRVSSNDTGKFYLQ
HHHHHHHHHHEEEECCCCEEEEHHHCCHHCCCCEEEECCCCCCCCCHHCCCCCCCEEEEE
LAAFGSAHNAQSYLIQLRSNFPSITQQAYINQTSGLHKIFVGPFPDLEAATRTANTISAS
EEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCEEECC
GSPKPILVPHTYMAGSE
CCCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]