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The map label for this gene is xseB [H]

Identifier: 114331487

GI number: 114331487

Start: 1570067

End: 1570378

Strand: Direct

Name: xseB [H]

Synonym: Neut_1499

Alternate gene names: 114331487

Gene position: 1570067-1570378 (Clockwise)

Preceding gene: 114331486

Following gene: 114331488

Centisome position: 59.0

GC content: 41.35

Gene sequence:

>312_bases
ATGTCGAGAGTCAATGTTTGTACCCCAGAAAAACCTTCTATCCGAATGAAAAAAAAATCACTAAGCAAAGAGGAATCAGC
ATTACTTTCCCCCCCGGAAAATTTCGAAACAGCTACTACTGAACTGGAACAGATTGTGGCAAATATGGAAGCCGGGCAAA
TGTCTTTGGAAGATGCGCTTTCTGCGTACAAACGCGGAGTGGAATTGTTACAATACTGCCAGAATATGCTGAAAGACTCG
CAGCAACAGATAAAAATACTTGAAGCAGACATATTGAAAAATTTTTCTACTACCGAGCACGATGCACCCTGA

Upstream 100 bases:

>100_bases
CGTAGTCAGTTATGGGATTAATAATACCATTTGCCGGATTAAAAAGATTTGTTAAAAAACGGTGCTAAATCCGGTTATTT
CATTGAATTGACCTTTTTAT

Downstream 100 bases:

>100_bases
TTTCCAGCTGTGGACAACTGAGCGCCTTGCTTTAATTGAATCTTTCTTGGAGCAGAATCTTCCTGCCACGAATTGTGCCC
CTGCACGCTTGCATGAAGCA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 103; Mature: 102

Protein sequence:

>103_residues
MSRVNVCTPEKPSIRMKKKSLSKEESALLSPPENFETATTELEQIVANMEAGQMSLEDALSAYKRGVELLQYCQNMLKDS
QQQIKILEADILKNFSTTEHDAP

Sequences:

>Translated_103_residues
MSRVNVCTPEKPSIRMKKKSLSKEESALLSPPENFETATTELEQIVANMEAGQMSLEDALSAYKRGVELLQYCQNMLKDS
QQQIKILEADILKNFSTTEHDAP
>Mature_102_residues
SRVNVCTPEKPSIRMKKKSLSKEESALLSPPENFETATTELEQIVANMEAGQMSLEDALSAYKRGVELLQYCQNMLKDSQ
QQIKILEADILKNFSTTEHDAP

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 11590; Mature: 11459

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVNVCTPEKPSIRMKKKSLSKEESALLSPPENFETATTELEQIVANMEAGQMSLEDAL
CCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
SAYKRGVELLQYCQNMLKDSQQQIKILEADILKNFSTTEHDAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SRVNVCTPEKPSIRMKKKSLSKEESALLSPPENFETATTELEQIVANMEAGQMSLEDAL
CCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
SAYKRGVELLQYCQNMLKDSQQQIKILEADILKNFSTTEHDAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12700255 [H]