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The map label for this gene is psd

Identifier: 114331254

GI number: 114331254

Start: 1315230

End: 1315880

Strand: Reverse

Name: psd

Synonym: Neut_1259

Alternate gene names: 114331254

Gene position: 1315880-1315230 (Counterclockwise)

Preceding gene: 114331255

Following gene: 114331253

Centisome position: 49.45

GC content: 46.24

Gene sequence:

>651_bases
ATGTCGACTTCTTACTATCCACACCCGATTATTGCACGCGAAGGCTGGCCTTTTATCGCTGGAGCATTTGTTGTTGCATT
AGTAGTACAATTTTTTGCTGGTTGGGTATGGGCGCTACCATTGTGGCTGGTTGCTCTGCTCGTTTTACAATTCTTCCGTG
ATCCTCCACGGGTTATACCTACTCTTGCCGGAGCAGTACTCGCCCCGGCAGATGGGAGAATTGTTGCGGTGGATAAGGTT
CAAGATCCTTATCTTTCGCGCGAAGCGCTAAAAATCAGTGTTTTCATGAATGTTTTCAATGTGCATTCGAATCGTAGTCC
GGTAGATGGTGAAATACGTGATCAATGGTATTTTCCCGGAAGTTTTCTGAATGCAAGTCTACCTAAGGCCTCTTTGGAAA
ATGAGCGTAATGCCTTGTGGATTAGAACCAAAGAAGGGCGAGATGTAACTTGCGTACAGATAGCCGGCCTGATCGCAAAA
CGAATTGTCTGTCATGTACATCCCGGAGAGCATCTTGCTCGTGGACAACGTTTTGGCTTTATTCGCTTTGGCTCGCGTGT
TGATGTCTATCTTCCACCAGGAATGAAAGTCAATGTTGGAATTGGCGATAAGGTTCAAGCTACCCAAACAGTGCTGGCTG
AATTTCGCTGA

Upstream 100 bases:

>100_bases
GCTTCCGAACACCTGATTGAAACAGTCGGTTCCAGATTGCGTGACATGATGCCATGGATCAAGAAAAACAAACTGGTTGA
CCAGGCGAAGAACTGAATAT

Downstream 100 bases:

>100_bases
TTATTTCCGACTGATATCCATATCTATTTATGCAGGAATCTGATTCGGAAAAATTGCCTGTTGCAAGCGTCCGGTGGCGA
AGGAGGGGTATTTACCTGTT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MSTSYYPHPIIAREGWPFIAGAFVVALVVQFFAGWVWALPLWLVALLVLQFFRDPPRVIPTLAGAVLAPADGRIVAVDKV
QDPYLSREALKISVFMNVFNVHSNRSPVDGEIRDQWYFPGSFLNASLPKASLENERNALWIRTKEGRDVTCVQIAGLIAK
RIVCHVHPGEHLARGQRFGFIRFGSRVDVYLPPGMKVNVGIGDKVQATQTVLAEFR

Sequences:

>Translated_216_residues
MSTSYYPHPIIAREGWPFIAGAFVVALVVQFFAGWVWALPLWLVALLVLQFFRDPPRVIPTLAGAVLAPADGRIVAVDKV
QDPYLSREALKISVFMNVFNVHSNRSPVDGEIRDQWYFPGSFLNASLPKASLENERNALWIRTKEGRDVTCVQIAGLIAK
RIVCHVHPGEHLARGQRFGFIRFGSRVDVYLPPGMKVNVGIGDKVQATQTVLAEFR
>Mature_215_residues
STSYYPHPIIAREGWPFIAGAFVVALVVQFFAGWVWALPLWLVALLVLQFFRDPPRVIPTLAGAVLAPADGRIVAVDKVQ
DPYLSREALKISVFMNVFNVHSNRSPVDGEIRDQWYFPGSFLNASLPKASLENERNALWIRTKEGRDVTCVQIAGLIAKR
IVCHVHPGEHLARGQRFGFIRFGSRVDVYLPPGMKVNVGIGDKVQATQTVLAEFR

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_NITEC (Q0AGM1)

Other databases:

- EMBL:   CP000450
- RefSeq:   YP_747476.1
- STRING:   Q0AGM1
- GeneID:   4273930
- GenomeReviews:   CP000450_GR
- KEGG:   net:Neut_1259
- NMPDR:   fig|335283.3.peg.2169
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   NEUT335283:NEUT_1259-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 24124; Mature: 23993

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSYYPHPIIAREGWPFIAGAFVVALVVQFFAGWVWALPLWLVALLVLQFFRDPPRVIP
CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TLAGAVLAPADGRIVAVDKVQDPYLSREALKISVFMNVFNVHSNRSPVDGEIRDQWYFPG
HHHHHEECCCCCCEEEEECCCCCCCCHHHEEHHHHHHHHHHCCCCCCCCCCCCCEEECCC
SFLNASLPKASLENERNALWIRTKEGRDVTCVQIAGLIAKRIVCHVHPGEHLARGQRFGF
HHCCCCCCCHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHEEEECCCHHHHCCCCEEE
IRFGSRVDVYLPPGMKVNVGIGDKVQATQTVLAEFR
EEECCEEEEEECCCCEEEECCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
STSYYPHPIIAREGWPFIAGAFVVALVVQFFAGWVWALPLWLVALLVLQFFRDPPRVIP
CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TLAGAVLAPADGRIVAVDKVQDPYLSREALKISVFMNVFNVHSNRSPVDGEIRDQWYFPG
HHHHHEECCCCCCEEEEECCCCCCCCHHHEEHHHHHHHHHHCCCCCCCCCCCCCEEECCC
SFLNASLPKASLENERNALWIRTKEGRDVTCVQIAGLIAKRIVCHVHPGEHLARGQRFGF
HHCCCCCCCHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHEEEECCCHHHHCCCCEEE
IRFGSRVDVYLPPGMKVNVGIGDKVQATQTVLAEFR
EEECCEEEEEECCCCEEEECCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA