| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477609
Identifier: 113477609
GI number: 113477609
Start: 6468582
End: 6470834
Strand: Reverse
Name: 113477609
Synonym: Tery_4193
Alternate gene names: NA
Gene position: 6470834-6468582 (Counterclockwise)
Preceding gene: 113477611
Following gene: 113477608
Centisome position: 83.49
GC content: 38.84
Gene sequence:
>2253_bases GTGCCCGATACTTCTCTATGGATTACAGGAAAAACTCTTAGTGGTAAAACAAGTCGGTTAATAAAAGAATTCTGTATCAG AGGCCAAGAGATTCAATCTCCCCTAAATAAAGTTGTTCCCGTACTGAAGGTAGAAAAACTCAAAAGCGATCGTGATAATC AAATAGGGAACTTCCAATATACTGAACCCAAAATTTTGGTTTTAGCTGCTAATACAAAGAGCCGGATTAATTTGATAGAT AGAATTTCGGAAGCTACATCAGAACAATACCCTTATTACTCAACTACTCCATTGGGTTTTTTTGAGGATGAGGTAATCTT ATTCTGGCCATTGCTCATTCAAACCTTGGATTTGAGGGGGCAATTTCCCTTGCGACTGCGCCCCGAAAAAGAACAGGAAC TTGCTAGTAGATTTTGGCGTCCTCAGATAGATAAACTCAAACAGCCAGGGATTAGTTTAGAGCGGATGATACGTCGAACT CTAGACTTATTTCAGTTGGCTGCTTTCAGTTGTACGCCTACAAAAGAAATCGAAATGATTTTACAACAGGGATTTGAGGA TGTAGGGACTGGTTCCCTAAGTACTCTAGATAACTTCTATGCCAATATAGTAGAATTAATGCAAGAGTGGCGAGATTGGT GTTGGCAAGGAGGTTTCCTAACGTACGGAATAATCACGGAGTTGTACTGGCGGTATCTATTACCCAACTCTACCTATCAG CAACATTTAATTCACCGCTATCCGTTTGTGTTGGCAGATGATGTGGATGAATATCCAGCCATAACTTATCAGTTGTTTGA CTTTCTGTTAGATAATGGAGCTATAAGTGTTTTTACTTATAATCCTGATGGTAGTATTAGGTTGGGTTTGGGGGCTGACC CGGAATATCTCGCAAAACTACAAAAGCGCTGTCAAACAGAAACATTAGAAAATCCTCAGAATTTAGCACAAGAAATAGGG GAACCTATTATCGAATTAGTCGTCAATAATTACCTGAATATTGATCAACTCCCAACTTATTTTAAATCTATTATAACTAG ATCCAGGGTAGCTTTATTACGAAAAATAGCAGAGGTGATAGTTAAAGATATAAGTTTAGGTATAAAGCCTGAAGAAGTAG CAATAATAGCTCCTGGTTTGGATGCGATCGCTCGTTATAGTTTGATTTCAAGTCTCAAGAATGATGGAATTGCTGTGGAA TCTCTTAAAGAACAACGTCCTCTAATTAGCTATCCGATGATTAGAGCATTGTTGATTATTTTAACTTTAGTTTATCCTGG TTTGGGTCGTCTAGTAGATCGTGATGCTGTGGCAGAAATGCTGGTGGTATTAAGTCAAAGGTCAATTACTAAAGGGGAAA AACAAATAGATGGTCAGGAAAATTTACAAAAGACTAATGATATTGATCCAGTAAGGGCAGGTTTATTAGCGGATAATTGC TTTTATCCAGATATTACACATCCACAGTTATTACCCATAGGAACTTTTTCTAGATGGGATCGGGTGGGACATCAAGCAAC TTATGTTTATAATCAGATTTTAGAGTGGATAGAAAAACAGCGTTCCCAACAGCAAGAAGGTCAACTACCTAACCCAATAT TTTTACTAGATAGAGCAATTCAAAAATTTTTTATTTCTAGTTATCTTTCTTTTGCTCAGTTATCAGGGCTACGAGAGTTA ATGGAAACAGCAACCCACTATTGGGAAGTAGAGCGTAGATTACAACAAAACTCCCAACTGCAAGCAACAGAAGATATGAC TGATGATTCAATGGAGGAAGGTTTATCCTCTAGTACAGTGGAGAAGTTTATCCAGTTTTTACGCAGAGGTGTTGTTAGTG CGAACCCATATCCAGTCCCTTTAATGGGTCGTTCACCTTCAGCGGTAACTTTGGCGACGATTTTTCAATACCGAGCTAGT CGCAAATGTCATAGATGGCAGTTTTGGTTGGATATTGGTTCTCCTCTGTGGTTAAGTGGAGGTACTGCCACTCTCTACGG AGCAACATTATTTTTGCAAGGCCAGTTAGGAAAATGTTGGACTATTGAAGATTCTCAAAAATCTGATCGGGAAAGATTGC GACGAATTTTGCTAGATTTGTTAAGTCGTGTCAGTTATTCCAACTCTAGTTCAGTTAATGGGTCAAATGAACATCGGATT TACCTTTGTCACAGCGATTTGGCTGTCAATGGGCAGGAGCAAACAGGGCCACTTTTACCTTTGGTCTACAGTTCTATGTC CCATACTGATTAG
Upstream 100 bases:
>100_bases TGTAATCTAAATACTAGAAAAAAATTTTTTCGCCAGGTATCTATTCCTTATTCCCTGTGCAAAGCACTATAATTGATTAA TCAAAAAAGGATAATTAACA
Downstream 100 bases:
>100_bases TTGCACAATTCAGAATAAATACTTATTGTAGTCTTTGGCCAAATTTAAGACTAATCAAAAATTAATGTCTATTATAAAAT AGAGTATTTGTCAATAAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 750; Mature: 749
Protein sequence:
>750_residues MPDTSLWITGKTLSGKTSRLIKEFCIRGQEIQSPLNKVVPVLKVEKLKSDRDNQIGNFQYTEPKILVLAANTKSRINLID RISEATSEQYPYYSTTPLGFFEDEVILFWPLLIQTLDLRGQFPLRLRPEKEQELASRFWRPQIDKLKQPGISLERMIRRT LDLFQLAAFSCTPTKEIEMILQQGFEDVGTGSLSTLDNFYANIVELMQEWRDWCWQGGFLTYGIITELYWRYLLPNSTYQ QHLIHRYPFVLADDVDEYPAITYQLFDFLLDNGAISVFTYNPDGSIRLGLGADPEYLAKLQKRCQTETLENPQNLAQEIG EPIIELVVNNYLNIDQLPTYFKSIITRSRVALLRKIAEVIVKDISLGIKPEEVAIIAPGLDAIARYSLISSLKNDGIAVE SLKEQRPLISYPMIRALLIILTLVYPGLGRLVDRDAVAEMLVVLSQRSITKGEKQIDGQENLQKTNDIDPVRAGLLADNC FYPDITHPQLLPIGTFSRWDRVGHQATYVYNQILEWIEKQRSQQQEGQLPNPIFLLDRAIQKFFISSYLSFAQLSGLREL METATHYWEVERRLQQNSQLQATEDMTDDSMEEGLSSSTVEKFIQFLRRGVVSANPYPVPLMGRSPSAVTLATIFQYRAS RKCHRWQFWLDIGSPLWLSGGTATLYGATLFLQGQLGKCWTIEDSQKSDRERLRRILLDLLSRVSYSNSSSVNGSNEHRI YLCHSDLAVNGQEQTGPLLPLVYSSMSHTD
Sequences:
>Translated_750_residues MPDTSLWITGKTLSGKTSRLIKEFCIRGQEIQSPLNKVVPVLKVEKLKSDRDNQIGNFQYTEPKILVLAANTKSRINLID RISEATSEQYPYYSTTPLGFFEDEVILFWPLLIQTLDLRGQFPLRLRPEKEQELASRFWRPQIDKLKQPGISLERMIRRT LDLFQLAAFSCTPTKEIEMILQQGFEDVGTGSLSTLDNFYANIVELMQEWRDWCWQGGFLTYGIITELYWRYLLPNSTYQ QHLIHRYPFVLADDVDEYPAITYQLFDFLLDNGAISVFTYNPDGSIRLGLGADPEYLAKLQKRCQTETLENPQNLAQEIG EPIIELVVNNYLNIDQLPTYFKSIITRSRVALLRKIAEVIVKDISLGIKPEEVAIIAPGLDAIARYSLISSLKNDGIAVE SLKEQRPLISYPMIRALLIILTLVYPGLGRLVDRDAVAEMLVVLSQRSITKGEKQIDGQENLQKTNDIDPVRAGLLADNC FYPDITHPQLLPIGTFSRWDRVGHQATYVYNQILEWIEKQRSQQQEGQLPNPIFLLDRAIQKFFISSYLSFAQLSGLREL METATHYWEVERRLQQNSQLQATEDMTDDSMEEGLSSSTVEKFIQFLRRGVVSANPYPVPLMGRSPSAVTLATIFQYRAS RKCHRWQFWLDIGSPLWLSGGTATLYGATLFLQGQLGKCWTIEDSQKSDRERLRRILLDLLSRVSYSNSSSVNGSNEHRI YLCHSDLAVNGQEQTGPLLPLVYSSMSHTD >Mature_749_residues PDTSLWITGKTLSGKTSRLIKEFCIRGQEIQSPLNKVVPVLKVEKLKSDRDNQIGNFQYTEPKILVLAANTKSRINLIDR ISEATSEQYPYYSTTPLGFFEDEVILFWPLLIQTLDLRGQFPLRLRPEKEQELASRFWRPQIDKLKQPGISLERMIRRTL DLFQLAAFSCTPTKEIEMILQQGFEDVGTGSLSTLDNFYANIVELMQEWRDWCWQGGFLTYGIITELYWRYLLPNSTYQQ HLIHRYPFVLADDVDEYPAITYQLFDFLLDNGAISVFTYNPDGSIRLGLGADPEYLAKLQKRCQTETLENPQNLAQEIGE PIIELVVNNYLNIDQLPTYFKSIITRSRVALLRKIAEVIVKDISLGIKPEEVAIIAPGLDAIARYSLISSLKNDGIAVES LKEQRPLISYPMIRALLIILTLVYPGLGRLVDRDAVAEMLVVLSQRSITKGEKQIDGQENLQKTNDIDPVRAGLLADNCF YPDITHPQLLPIGTFSRWDRVGHQATYVYNQILEWIEKQRSQQQEGQLPNPIFLLDRAIQKFFISSYLSFAQLSGLRELM ETATHYWEVERRLQQNSQLQATEDMTDDSMEEGLSSSTVEKFIQFLRRGVVSANPYPVPLMGRSPSAVTLATIFQYRASR KCHRWQFWLDIGSPLWLSGGTATLYGATLFLQGQLGKCWTIEDSQKSDRERLRRILLDLLSRVSYSNSSSVNGSNEHRIY LCHSDLAVNGQEQTGPLLPLVYSSMSHTD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85755; Mature: 85624
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDTSLWITGKTLSGKTSRLIKEFCIRGQEIQSPLNKVVPVLKVEKLKSDRDNQIGNFQY CCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE TEPKILVLAANTKSRINLIDRISEATSEQYPYYSTTPLGFFEDEVILFWPLLIQTLDLRG CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC QFPLRLRPEKEQELASRFWRPQIDKLKQPGISLERMIRRTLDLFQLAAFSCTPTKEIEMI CCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH LQQGFEDVGTGSLSTLDNFYANIVELMQEWRDWCWQGGFLTYGIITELYWRYLLPNSTYQ HHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH QHLIHRYPFVLADDVDEYPAITYQLFDFLLDNGAISVFTYNPDGSIRLGLGADPEYLAKL HHHHHHCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCHHHHHHH QKRCQTETLENPQNLAQEIGEPIIELVVNNYLNIDQLPTYFKSIITRSRVALLRKIAEVI HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VKDISLGIKPEEVAIIAPGLDAIARYSLISSLKNDGIAVESLKEQRPLISYPMIRALLII HHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHH LTLVYPGLGRLVDRDAVAEMLVVLSQRSITKGEKQIDGQENLQKTNDIDPVRAGLLADNC HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHCCCCCHHHHHHHHCCC FYPDITHPQLLPIGTFSRWDRVGHQATYVYNQILEWIEKQRSQQQEGQLPNPIFLLDRAI CCCCCCCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH QKFFISSYLSFAQLSGLRELMETATHYWEVERRLQQNSQLQATEDMTDDSMEEGLSSSTV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCCCHHHH EKFIQFLRRGVVSANPYPVPLMGRSPSAVTLATIFQYRASRKCHRWQFWLDIGSPLWLSG HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHEEEEEEECCCCEEECC GTATLYGATLFLQGQLGKCWTIEDSQKSDRERLRRILLDLLSRVSYSNSSSVNGSNEHRI CCCEEEEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE YLCHSDLAVNGQEQTGPLLPLVYSSMSHTD EEEECCCEECCCCCCCCCHHHHHHHCCCCC >Mature Secondary Structure PDTSLWITGKTLSGKTSRLIKEFCIRGQEIQSPLNKVVPVLKVEKLKSDRDNQIGNFQY CCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE TEPKILVLAANTKSRINLIDRISEATSEQYPYYSTTPLGFFEDEVILFWPLLIQTLDLRG CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC QFPLRLRPEKEQELASRFWRPQIDKLKQPGISLERMIRRTLDLFQLAAFSCTPTKEIEMI CCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH LQQGFEDVGTGSLSTLDNFYANIVELMQEWRDWCWQGGFLTYGIITELYWRYLLPNSTYQ HHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH QHLIHRYPFVLADDVDEYPAITYQLFDFLLDNGAISVFTYNPDGSIRLGLGADPEYLAKL HHHHHHCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCHHHHHHH QKRCQTETLENPQNLAQEIGEPIIELVVNNYLNIDQLPTYFKSIITRSRVALLRKIAEVI HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VKDISLGIKPEEVAIIAPGLDAIARYSLISSLKNDGIAVESLKEQRPLISYPMIRALLII HHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHH LTLVYPGLGRLVDRDAVAEMLVVLSQRSITKGEKQIDGQENLQKTNDIDPVRAGLLADNC HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHCCCCCHHHHHHHHCCC FYPDITHPQLLPIGTFSRWDRVGHQATYVYNQILEWIEKQRSQQQEGQLPNPIFLLDRAI CCCCCCCCCEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH QKFFISSYLSFAQLSGLRELMETATHYWEVERRLQQNSQLQATEDMTDDSMEEGLSSSTV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCCCHHHH EKFIQFLRRGVVSANPYPVPLMGRSPSAVTLATIFQYRASRKCHRWQFWLDIGSPLWLSG HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHEEEEEEECCCCEEECC GTATLYGATLFLQGQLGKCWTIEDSQKSDRERLRRILLDLLSRVSYSNSSSVNGSNEHRI CCCEEEEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE YLCHSDLAVNGQEQTGPLLPLVYSSMSHTD EEEECCCEECCCCCCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA