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The map label for this gene is 113477601

Identifier: 113477601

GI number: 113477601

Start: 6447795

End: 6448721

Strand: Reverse

Name: 113477601

Synonym: Tery_4185

Alternate gene names: NA

Gene position: 6448721-6447795 (Counterclockwise)

Preceding gene: 113477607

Following gene: 113477600

Centisome position: 83.21

GC content: 38.19

Gene sequence:

>927_bases
ATGGTTTCTGTTATTTACTCCGATGAATTTCTCGAACATAAAACTGGTATATTACACCCAGAGCGACCAGAACGTTTAAC
TGCAATTGTGACAGCTCTCAAAGCCTTTCCTGATAATGGCCAACTGCAATGGCACTCACCTACCCCAGTACAACAGCGTG
ATTCATTATTGATGACACTGCTAGAAAAAGTTCATTCTCGTAGTCATATTAAAGCAGTGGCAGAAATAGCTGATCATGGT
GGAGGTTTTTTAGATACAGATACACCAGTTTTTGTTAAAAGTTATGATGTGGCATTGTTAGCGGTAAGTGCTTGGTTAGA
TGGAGTAGATTTGGTATTAACAAATAGGAAACCTACTTTTGTTTTGGCAAGACCACCTGGACATCATGCTGAAAGCAGAC
GGGGCATGGGTTTTTGCTTATTTTCCAATGCTGCGATCGCCGCTCATTATGCCCTAGAAAAACTAGACATTAACAAAGTT
GCCATTCTCGACTGGGATGTACATCATGGTAATGGTACTCAAGAAATTGTAGAAACTAATGAGAACATAGCTTACTGTTC
TCTGCATCAATATCCCTGTTATCCTGGAACAGGGTCTGCTGAGGAACATGGTTTTTACAATAATGTACTAAATCTGCCTA
TGTCGCCAGGTAGTACAATAGCTAATTATCAAAGGGCTTTCAAGGAAAAAGTCATCCCCTTTTTAGCTAATTTTCAACCA
GATTTATTGATTGTTAGTGCTGGTTATGATGCTAACCATGACGACCCATTAGCAAGTATTTCTCTACAACCAGAAGACTA
TAGATTATTTACAGAATATTGTTTGCAAATAACCCGCAAGATATTATTTGGTTTAGAAGGTGGTTATGACTTACCCAGTT
TGTCTAAGTCAGTATTAGAAACAATAGAAGCTTGTTTAGTGAATTAA

Upstream 100 bases:

>100_bases
TACTATTTTTTAAGAAATTTCTGTAAATCAACTCAGTTTCTGCATAAGTCCTATCAAGGTTTCATCAAATGGGACAATTT
CTAATATCTAAAATTAAATT

Downstream 100 bases:

>100_bases
AAGTAGGGAGTAAATGACCGAATAAGATATTTAGAACTTACGGACTCCCACGGCCGGTTTCTCAGATTATATAGAATATG
TTCATAAAATTCCTATTATA

Product: histone deacetylase superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MVSVIYSDEFLEHKTGILHPERPERLTAIVTALKAFPDNGQLQWHSPTPVQQRDSLLMTLLEKVHSRSHIKAVAEIADHG
GGFLDTDTPVFVKSYDVALLAVSAWLDGVDLVLTNRKPTFVLARPPGHHAESRRGMGFCLFSNAAIAAHYALEKLDINKV
AILDWDVHHGNGTQEIVETNENIAYCSLHQYPCYPGTGSAEEHGFYNNVLNLPMSPGSTIANYQRAFKEKVIPFLANFQP
DLLIVSAGYDANHDDPLASISLQPEDYRLFTEYCLQITRKILFGLEGGYDLPSLSKSVLETIEACLVN

Sequences:

>Translated_308_residues
MVSVIYSDEFLEHKTGILHPERPERLTAIVTALKAFPDNGQLQWHSPTPVQQRDSLLMTLLEKVHSRSHIKAVAEIADHG
GGFLDTDTPVFVKSYDVALLAVSAWLDGVDLVLTNRKPTFVLARPPGHHAESRRGMGFCLFSNAAIAAHYALEKLDINKV
AILDWDVHHGNGTQEIVETNENIAYCSLHQYPCYPGTGSAEEHGFYNNVLNLPMSPGSTIANYQRAFKEKVIPFLANFQP
DLLIVSAGYDANHDDPLASISLQPEDYRLFTEYCLQITRKILFGLEGGYDLPSLSKSVLETIEACLVN
>Mature_308_residues
MVSVIYSDEFLEHKTGILHPERPERLTAIVTALKAFPDNGQLQWHSPTPVQQRDSLLMTLLEKVHSRSHIKAVAEIADHG
GGFLDTDTPVFVKSYDVALLAVSAWLDGVDLVLTNRKPTFVLARPPGHHAESRRGMGFCLFSNAAIAAHYALEKLDINKV
AILDWDVHHGNGTQEIVETNENIAYCSLHQYPCYPGTGSAEEHGFYNNVLNLPMSPGSTIANYQRAFKEKVIPFLANFQP
DLLIVSAGYDANHDDPLASISLQPEDYRLFTEYCLQITRKILFGLEGGYDLPSLSKSVLETIEACLVN

Specific function: Putative deacetylase [H]

COG id: COG0123

COG function: function code BQ; Deacetylases, including yeast histone deacetylase and acetoin utilization protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone deacetylase family [H]

Homologues:

Organism=Homo sapiens, GI153085395, Length=243, Percent_Identity=36.6255144032922, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI20070354, Length=307, Percent_Identity=32.8990228013029, Blast_Score=132, Evalue=4e-31,
Organism=Homo sapiens, GI13128864, Length=297, Percent_Identity=32.6599326599327, Blast_Score=131, Evalue=7e-31,
Organism=Homo sapiens, GI17158039, Length=247, Percent_Identity=34.412955465587, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI30795204, Length=247, Percent_Identity=34.412955465587, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI30795202, Length=247, Percent_Identity=34.412955465587, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI62750347, Length=243, Percent_Identity=34.5679012345679, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI62750349, Length=243, Percent_Identity=34.5679012345679, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI148539870, Length=248, Percent_Identity=33.8709677419355, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI169234807, Length=248, Percent_Identity=33.8709677419355, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI226529806, Length=307, Percent_Identity=29.9674267100977, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI13128860, Length=313, Percent_Identity=23.3226837060703, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI293336691, Length=279, Percent_Identity=25.089605734767, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI13128862, Length=311, Percent_Identity=23.7942122186495, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI8923769, Length=312, Percent_Identity=20.5128205128205, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17540334, Length=317, Percent_Identity=33.7539432176656, Blast_Score=152, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI193206283, Length=317, Percent_Identity=33.7539432176656, Blast_Score=151, Evalue=4e-37,
Organism=Caenorhabditis elegans, GI17540332, Length=317, Percent_Identity=33.7539432176656, Blast_Score=151, Evalue=4e-37,
Organism=Caenorhabditis elegans, GI193209491, Length=242, Percent_Identity=38.0165289256198, Blast_Score=144, Evalue=7e-35,
Organism=Caenorhabditis elegans, GI17537347, Length=305, Percent_Identity=32.7868852459016, Blast_Score=136, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI25154020, Length=180, Percent_Identity=35.5555555555556, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI25154022, Length=177, Percent_Identity=35.0282485875706, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17508561, Length=316, Percent_Identity=26.2658227848101, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17534739, Length=222, Percent_Identity=25.6756756756757, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17561978, Length=197, Percent_Identity=28.9340101522843, Blast_Score=68, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6324307, Length=311, Percent_Identity=31.1897106109325, Blast_Score=139, Evalue=7e-34,
Organism=Saccharomyces cerevisiae, GI6321244, Length=322, Percent_Identity=23.9130434782609, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6325141, Length=365, Percent_Identity=25.4794520547945, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6323999, Length=312, Percent_Identity=21.7948717948718, Blast_Score=81, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6325325, Length=127, Percent_Identity=31.496062992126, Blast_Score=73, Evalue=5e-14,
Organism=Drosophila melanogaster, GI281360899, Length=300, Percent_Identity=33.6666666666667, Blast_Score=152, Evalue=3e-37,
Organism=Drosophila melanogaster, GI24642144, Length=300, Percent_Identity=33.6666666666667, Blast_Score=152, Evalue=3e-37,
Organism=Drosophila melanogaster, GI24642146, Length=300, Percent_Identity=33.6666666666667, Blast_Score=152, Evalue=4e-37,
Organism=Drosophila melanogaster, GI24642142, Length=300, Percent_Identity=33.6666666666667, Blast_Score=152, Evalue=4e-37,
Organism=Drosophila melanogaster, GI281360799, Length=249, Percent_Identity=35.3413654618474, Blast_Score=138, Evalue=5e-33,
Organism=Drosophila melanogaster, GI24641720, Length=249, Percent_Identity=35.3413654618474, Blast_Score=138, Evalue=6e-33,
Organism=Drosophila melanogaster, GI281360801, Length=249, Percent_Identity=35.3413654618474, Blast_Score=137, Evalue=6e-33,
Organism=Drosophila melanogaster, GI24644244, Length=315, Percent_Identity=24.1269841269841, Blast_Score=85, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24657891, Length=313, Percent_Identity=22.6837060702875, Blast_Score=71, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000286 [H]

Pfam domain/function: PF00850 Hist_deacetyl [H]

EC number: NA

Molecular weight: Translated: 34187; Mature: 34187

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSVIYSDEFLEHKTGILHPERPERLTAIVTALKAFPDNGQLQWHSPTPVQQRDSLLMTL
CEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH
LEKVHSRSHIKAVAEIADHGGGFLDTDTPVFVKSYDVALLAVSAWLDGVDLVLTNRKPTF
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHCCEEEEEECCCCEE
VLARPPGHHAESRRGMGFCLFSNAAIAAHYALEKLDINKVAILDWDVHHGNGTQEIVETN
EEECCCCCCCHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHCC
ENIAYCSLHQYPCYPGTGSAEEHGFYNNVLNLPMSPGSTIANYQRAFKEKVIPFLANFQP
CCEEEEEEECCCCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DLLIVSAGYDANHDDPLASISLQPEDYRLFTEYCLQITRKILFGLEGGYDLPSLSKSVLE
CEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
TIEACLVN
HHHHHHCC
>Mature Secondary Structure
MVSVIYSDEFLEHKTGILHPERPERLTAIVTALKAFPDNGQLQWHSPTPVQQRDSLLMTL
CEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH
LEKVHSRSHIKAVAEIADHGGGFLDTDTPVFVKSYDVALLAVSAWLDGVDLVLTNRKPTF
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHCCEEEEEECCCCEE
VLARPPGHHAESRRGMGFCLFSNAAIAAHYALEKLDINKVAILDWDVHHGNGTQEIVETN
EEECCCCCCCHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHCC
ENIAYCSLHQYPCYPGTGSAEEHGFYNNVLNLPMSPGSTIANYQRAFKEKVIPFLANFQP
CCEEEEEEECCCCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DLLIVSAGYDANHDDPLASISLQPEDYRLFTEYCLQITRKILFGLEGGYDLPSLSKSVLE
CEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
TIEACLVN
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]