| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477584
Identifier: 113477584
GI number: 113477584
Start: 6427319
End: 6427924
Strand: Reverse
Name: 113477584
Synonym: Tery_4166
Alternate gene names: NA
Gene position: 6427924-6427319 (Counterclockwise)
Preceding gene: 113477585
Following gene: 113477583
Centisome position: 82.94
GC content: 27.89
Gene sequence:
>606_bases ATGATCTTTGCTCCTATTATGTTACCGATTATTCCACCTCCGAAAGGATTTAAAATCTTCTACTCTTCTCACAGTGAGCT TCTATTAGTTTACCGTCCAAATGGCATGAGATATTTAATAATATTCTCAATGATACGCCTTTTAGCTTGGCTACTATTCT GTATTTTTATTGCTATATTGCTAATAACTTCATTTCTCCTGATTCAAGATTATTTAATTATTATTTTAACTTTTATATTT TTATTTATTCCTTTAGTGATGTATTTTTTTGTTGCTAAAATTGTTGATCAAGTCTATATAATCATATATTTTTTTCTAGC AAAAGCTAGATTTGACTTAAGACTTGACTACCTGGTTTTCAATGAAAAATTAGGTAATTTTAAAGAAAAAAAACACGAAA TTAGACGCTCAAAAATTAAATATATACAACAAATTAAAACTAGCGGTTTTAAAAGAAATAGATTATCATCATGGGGTTTA TTAATCAAAACTACCCATCAAGATTATCAACTCCTTGCTTATCAGTCTTATGACAATATTCAATGGTTAGGTAATATTAT TGCTGCATGGGCTAAAGTTAGTTACCTACCATCATTAGAAAAGTAG
Upstream 100 bases:
>100_bases AACTTATAGAAAAAATTAAGTTGAGAATTTCTTTATGAAAAAAAATTTATCTTTAGTATAATTAATTTTTTTTCCTAGCA ACAAATATTGAAAATCTTTA
Downstream 100 bases:
>100_bases TTATAACAGAAAAATAAACTTTTGCTACAAATATTTAGTCTACTATTTAAGATTTAGGATAAAGTACTAAGGAGTCAGAA TAAATAGTTTAAATCTCATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 201
Protein sequence:
>201_residues MIFAPIMLPIIPPPKGFKIFYSSHSELLLVYRPNGMRYLIIFSMIRLLAWLLFCIFIAILLITSFLLIQDYLIIILTFIF LFIPLVMYFFVAKIVDQVYIIIYFFLAKARFDLRLDYLVFNEKLGNFKEKKHEIRRSKIKYIQQIKTSGFKRNRLSSWGL LIKTTHQDYQLLAYQSYDNIQWLGNIIAAWAKVSYLPSLEK
Sequences:
>Translated_201_residues MIFAPIMLPIIPPPKGFKIFYSSHSELLLVYRPNGMRYLIIFSMIRLLAWLLFCIFIAILLITSFLLIQDYLIIILTFIF LFIPLVMYFFVAKIVDQVYIIIYFFLAKARFDLRLDYLVFNEKLGNFKEKKHEIRRSKIKYIQQIKTSGFKRNRLSSWGL LIKTTHQDYQLLAYQSYDNIQWLGNIIAAWAKVSYLPSLEK >Mature_201_residues MIFAPIMLPIIPPPKGFKIFYSSHSELLLVYRPNGMRYLIIFSMIRLLAWLLFCIFIAILLITSFLLIQDYLIIILTFIF LFIPLVMYFFVAKIVDQVYIIIYFFLAKARFDLRLDYLVFNEKLGNFKEKKHEIRRSKIKYIQQIKTSGFKRNRLSSWGL LIKTTHQDYQLLAYQSYDNIQWLGNIIAAWAKVSYLPSLEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23942; Mature: 23942
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFAPIMLPIIPPPKGFKIFYSSHSELLLVYRPNGMRYLIIFSMIRLLAWLLFCIFIAIL CEECCEEEECCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH LITSFLLIQDYLIIILTFIFLFIPLVMYFFVAKIVDQVYIIIYFFLAKARFDLRLDYLVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHH NEKLGNFKEKKHEIRRSKIKYIQQIKTSGFKRNRLSSWGLLIKTTHQDYQLLAYQSYDNI HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHH QWLGNIIAAWAKVSYLPSLEK HHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIFAPIMLPIIPPPKGFKIFYSSHSELLLVYRPNGMRYLIIFSMIRLLAWLLFCIFIAIL CEECCEEEECCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH LITSFLLIQDYLIIILTFIFLFIPLVMYFFVAKIVDQVYIIIYFFLAKARFDLRLDYLVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHH NEKLGNFKEKKHEIRRSKIKYIQQIKTSGFKRNRLSSWGLLIKTTHQDYQLLAYQSYDNI HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHH QWLGNIIAAWAKVSYLPSLEK HHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA