| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is yrvJ [H]
Identifier: 113477463
GI number: 113477463
Start: 6237948
End: 6239858
Strand: Reverse
Name: yrvJ [H]
Synonym: Tery_4034
Alternate gene names: 113477463
Gene position: 6239858-6237948 (Counterclockwise)
Preceding gene: 113477470
Following gene: 113477461
Centisome position: 80.51
GC content: 36.53
Gene sequence:
>1911_bases ATGGGAAATTTTAATCCACTGCTAATGGTTATAAGAAAAGCAATAAATTTCCAAGTATTTAGGAAAATTATTAGTTTATC TACCCTAGAGTTAATAATATTTTTAGGACTAATAAATATCATTTCTCCTAATGCTATGTCACAAAATTATGAAGATAATA ATCAACTTCCACAGGACTCCAAGTCAAGGAAAAAATCTCTATTTATTGCTTATCCTTCACCCAATCATAAAACTACTTCT GACAGAATTTTCTTAATTGGTACAGCTTCTCCAGAAGCTGAAGTTACTGTTAATGGAAAACTAATTAATGAGCGTAGTCG AATGGGTCATTTTGCTCCTACTTTTCCATTACAAATAGGGGAAAATATATTTACTGTACAACATCAAAATGAAGAGATTA TTTTAAAAATAACACGCAATTCAAATCAACCACCTTTACCAGTAGGGGTAGCTTTTACTCAAGATTCTTTGACTCCGATA AAAGATATTGCTAGAATGCCCGGGGAGTTGATTTGTTTTCAGGCGATCGCTCCTCCAAACGCTAATATTTCTGTATTATT AGCTACCCAAACTATTCCCCTATTTGCCCAATCTCAAATAGTAAATTTACCAGGAAATTTAGCAGTATTAACAGGAGATA ATCAACCTTTTCCCTCTGGGGGAGACTATTATCAAGGTTGTACAAAAGTAGAAACACCAGGAGAGTTAGGTCAACCTGAG TTTCAACTTAGTCTCATGGGGAAAACAGTGACTCAAAAAGCACCGGGAAAAGTGAGTATTCTTTCTCCAACTACGTTTGA AATAGCTGAGGTGACAGTAGAAGAGGGAGTTGCCAGAACCGGACCCAGTACCACCTATTCACGCTTGACACCATTACCAA AAGGTACTAAAGCTTTAATTACAGGGAAAGAGGGAGATTATTTACGCCTTGACTATGGTGGGTGGATCAAAGCAAACGAG ACCAGGATATTTACAGATGCAACACCACCGCGTTCGGTGATTCGGAGTGCGATCGCTCGTCAGGTTCAAGGTGCAACGGA AATTAGGTTTCCTCTGCAAGTTCCGGTGCCAGTAACAGTTGAACAGGGCGCTCGCTATTTAAGTTTAACTTTGCATAATA CTACTGCTCAAACTGATACTATTCGCCTAGATGATGATCCCTTAATTGAGAGATTAGACTGGCAACCAGTTTTGACTTCA ACAGTACAAAATGAACAGGCAGTTAGATATAAGTTTAACTTAAAAACAGACCAACAATGGGGTTATAAATTACAATATGT TGGTACAACTTTACTATTAACTTTGCGACATCCTCCAGCGGTAAAAAGTGTTATTAGTTCTGCTACTCAACCTTTAACTG GAATGAAAATTTTAATTGATGCAGGACATGGTAGTGAGAATGATCTAGGGGCAATAGGTCCGACTGGTTATCCTGAAAAA AATGTGACATTAATTATATCAAAGCTATTACAAAATGAGTTAATTAATCGAGGAGCTTTAGTGTATATGACACGAAAGGC AGAGGAAGATTTATACCCTAAAGACCGTGTAGAAATGATTAATCAACAAGTTCCAGATTTAGCACTTTCTGTTCATTATA ATGCTTTACCTGATTATGGAGATGCCCTAAAAACTCAGGGAATTGGTACTTTTTGGTATCATTCTCAAGCTCATAGTTTG GCAATATTTTTACATAATTATTTAGTGGAAAAATTAGACCGACCTTCCTATGGAGTATTTTGGAATAATTTGGCTTTAAC TCGTCCCGCGATCGCTCCTTCTGTGTTGTTAGAATTAGGATTTATGATTAACCCTTATGAATTTGAATGGATTATGAATT CTCAAGAACAACAGAAATTAGCAAAAGCATTAGCAGATGGAATTGTGGAGTGGGTCAAAAAAAGTCAGTAA
Upstream 100 bases:
>100_bases CTCTTAAAAAGTTAAGGAAAAAAATTTTAATTTAACTCAAATTCTCAAAAGAAAAATTTGGTAAAATTAAATAATATCAA CTCAAAAAAAAGAAAGTAAT
Downstream 100 bases:
>100_bases AATACTGAATATCAATCAAGTGCTAAAATAATATTCACTATTAAGCACACTTTAGTAGTTTTGAAATATTGGAGGTACAA AGTTTTACAAATTTAGTAGT
Product: cell wall hydrolase/autolysin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 636; Mature: 635
Protein sequence:
>636_residues MGNFNPLLMVIRKAINFQVFRKIISLSTLELIIFLGLINIISPNAMSQNYEDNNQLPQDSKSRKKSLFIAYPSPNHKTTS DRIFLIGTASPEAEVTVNGKLINERSRMGHFAPTFPLQIGENIFTVQHQNEEIILKITRNSNQPPLPVGVAFTQDSLTPI KDIARMPGELICFQAIAPPNANISVLLATQTIPLFAQSQIVNLPGNLAVLTGDNQPFPSGGDYYQGCTKVETPGELGQPE FQLSLMGKTVTQKAPGKVSILSPTTFEIAEVTVEEGVARTGPSTTYSRLTPLPKGTKALITGKEGDYLRLDYGGWIKANE TRIFTDATPPRSVIRSAIARQVQGATEIRFPLQVPVPVTVEQGARYLSLTLHNTTAQTDTIRLDDDPLIERLDWQPVLTS TVQNEQAVRYKFNLKTDQQWGYKLQYVGTTLLLTLRHPPAVKSVISSATQPLTGMKILIDAGHGSENDLGAIGPTGYPEK NVTLIISKLLQNELINRGALVYMTRKAEEDLYPKDRVEMINQQVPDLALSVHYNALPDYGDALKTQGIGTFWYHSQAHSL AIFLHNYLVEKLDRPSYGVFWNNLALTRPAIAPSVLLELGFMINPYEFEWIMNSQEQQKLAKALADGIVEWVKKSQ
Sequences:
>Translated_636_residues MGNFNPLLMVIRKAINFQVFRKIISLSTLELIIFLGLINIISPNAMSQNYEDNNQLPQDSKSRKKSLFIAYPSPNHKTTS DRIFLIGTASPEAEVTVNGKLINERSRMGHFAPTFPLQIGENIFTVQHQNEEIILKITRNSNQPPLPVGVAFTQDSLTPI KDIARMPGELICFQAIAPPNANISVLLATQTIPLFAQSQIVNLPGNLAVLTGDNQPFPSGGDYYQGCTKVETPGELGQPE FQLSLMGKTVTQKAPGKVSILSPTTFEIAEVTVEEGVARTGPSTTYSRLTPLPKGTKALITGKEGDYLRLDYGGWIKANE TRIFTDATPPRSVIRSAIARQVQGATEIRFPLQVPVPVTVEQGARYLSLTLHNTTAQTDTIRLDDDPLIERLDWQPVLTS TVQNEQAVRYKFNLKTDQQWGYKLQYVGTTLLLTLRHPPAVKSVISSATQPLTGMKILIDAGHGSENDLGAIGPTGYPEK NVTLIISKLLQNELINRGALVYMTRKAEEDLYPKDRVEMINQQVPDLALSVHYNALPDYGDALKTQGIGTFWYHSQAHSL AIFLHNYLVEKLDRPSYGVFWNNLALTRPAIAPSVLLELGFMINPYEFEWIMNSQEQQKLAKALADGIVEWVKKSQ >Mature_635_residues GNFNPLLMVIRKAINFQVFRKIISLSTLELIIFLGLINIISPNAMSQNYEDNNQLPQDSKSRKKSLFIAYPSPNHKTTSD RIFLIGTASPEAEVTVNGKLINERSRMGHFAPTFPLQIGENIFTVQHQNEEIILKITRNSNQPPLPVGVAFTQDSLTPIK DIARMPGELICFQAIAPPNANISVLLATQTIPLFAQSQIVNLPGNLAVLTGDNQPFPSGGDYYQGCTKVETPGELGQPEF QLSLMGKTVTQKAPGKVSILSPTTFEIAEVTVEEGVARTGPSTTYSRLTPLPKGTKALITGKEGDYLRLDYGGWIKANET RIFTDATPPRSVIRSAIARQVQGATEIRFPLQVPVPVTVEQGARYLSLTLHNTTAQTDTIRLDDDPLIERLDWQPVLTST VQNEQAVRYKFNLKTDQQWGYKLQYVGTTLLLTLRHPPAVKSVISSATQPLTGMKILIDAGHGSENDLGAIGPTGYPEKN VTLIISKLLQNELINRGALVYMTRKAEEDLYPKDRVEMINQQVPDLALSVHYNALPDYGDALKTQGIGTFWYHSQAHSLA IFLHNYLVEKLDRPSYGVFWNNLALTRPAIAPSVLLELGFMINPYEFEWIMNSQEQQKLAKALADGIVEWVKKSQ
Specific function: Probably involved in cell-wall metabolism [H]
COG id: COG0860
COG function: function code M; N-acetylmuramoyl-L-alanine amidase
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002508 - InterPro: IPR017293 - InterPro: IPR003646 - InterPro: IPR013247 [H]
Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 70575; Mature: 70444
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNFNPLLMVIRKAINFQVFRKIISLSTLELIIFLGLINIISPNAMSQNYEDNNQLPQDS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC KSRKKSLFIAYPSPNHKTTSDRIFLIGTASPEAEVTVNGKLINERSRMGHFAPTFPLQIG CCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCEEECCHHHCCCCCCCCCHHHC ENIFTVQHQNEEIILKITRNSNQPPLPVGVAFTQDSLTPIKDIARMPGELICFQAIAPPN CEEEEEEECCCEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCC ANISVLLATQTIPLFAQSQIVNLPGNLAVLTGDNQPFPSGGDYYQGCTKVETPGELGQPE CCEEEEEEEECCCEEECCEEEECCCCEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCC FQLSLMGKTVTQKAPGKVSILSPTTFEIAEVTVEEGVARTGPSTTYSRLTPLPKGTKALI EEEEEECCHHHCCCCCEEEEECCCCEEHEEEEHHHCCCCCCCCCCHHHCCCCCCCCEEEE TGKEGDYLRLDYGGWIKANETRIFTDATPPRSVIRSAIARQVQGATEIRFPLQVPVPVTV ECCCCCEEEEECCCEEEECCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCEEEC EQGARYLSLTLHNTTAQTDTIRLDDDPLIERLDWQPVLTSTVQNEQAVRYKFNLKTDQQW CCCCEEEEEEEECCCCCCCEEEECCCHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCCC GYKLQYVGTTLLLTLRHPPAVKSVISSATQPLTGMKILIDAGHGSENDLGAIGPTGYPEK CEEEEEECEEEEEEECCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC NVTLIISKLLQNELINRGALVYMTRKAEEDLYPKDRVEMINQQVPDLALSVHYNALPDYG CHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCC DALKTQGIGTFWYHSQAHSLAIFLHNYLVEKLDRPSYGVFWNNLALTRPAIAPSVLLELG HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEECCEEECCCCCHHHHHHHHC FMINPYEFEWIMNSQEQQKLAKALADGIVEWVKKSQ CEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GNFNPLLMVIRKAINFQVFRKIISLSTLELIIFLGLINIISPNAMSQNYEDNNQLPQDS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC KSRKKSLFIAYPSPNHKTTSDRIFLIGTASPEAEVTVNGKLINERSRMGHFAPTFPLQIG CCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCEEECCHHHCCCCCCCCCHHHC ENIFTVQHQNEEIILKITRNSNQPPLPVGVAFTQDSLTPIKDIARMPGELICFQAIAPPN CEEEEEEECCCEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCC ANISVLLATQTIPLFAQSQIVNLPGNLAVLTGDNQPFPSGGDYYQGCTKVETPGELGQPE CCEEEEEEEECCCEEECCEEEECCCCEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCC FQLSLMGKTVTQKAPGKVSILSPTTFEIAEVTVEEGVARTGPSTTYSRLTPLPKGTKALI EEEEEECCHHHCCCCCEEEEECCCCEEHEEEEHHHCCCCCCCCCCHHHCCCCCCCCEEEE TGKEGDYLRLDYGGWIKANETRIFTDATPPRSVIRSAIARQVQGATEIRFPLQVPVPVTV ECCCCCEEEEECCCEEEECCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCEEEC EQGARYLSLTLHNTTAQTDTIRLDDDPLIERLDWQPVLTSTVQNEQAVRYKFNLKTDQQW CCCCEEEEEEEECCCCCCCEEEECCCHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCCC GYKLQYVGTTLLLTLRHPPAVKSVISSATQPLTGMKILIDAGHGSENDLGAIGPTGYPEK CEEEEEECEEEEEEECCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC NVTLIISKLLQNELINRGALVYMTRKAEEDLYPKDRVEMINQQVPDLALSVHYNALPDYG CHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCC DALKTQGIGTFWYHSQAHSLAIFLHNYLVEKLDRPSYGVFWNNLALTRPAIAPSVLLELG HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEECCEEECCCCCHHHHHHHHC FMINPYEFEWIMNSQEQQKLAKALADGIVEWVKKSQ CEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]