| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113477403
Identifier: 113477403
GI number: 113477403
Start: 6133846
End: 6134280
Strand: Reverse
Name: 113477403
Synonym: Tery_3966
Alternate gene names: NA
Gene position: 6134280-6133846 (Counterclockwise)
Preceding gene: 113477404
Following gene: 113477402
Centisome position: 79.15
GC content: 36.32
Gene sequence:
>435_bases ATGAGTATCTGGTTAGTAATTGCAAATCCTTACGCTTATGATAAAGCAATGTGGAAAGCAGTTTCAGCAACACAAGAACA TCAAGGTAATTTGAGGGTTGTATTTTTTATTAATAATAACTCAATTCATGATATTATTGGTGAGTTGGGGCAGAGTGGTT GGTTGGGATCTAATCCTTTGCATAAATTACAAAGCTCAATGTTGGAAGGTTATCGCGCTTTAGCTGGTGATGTTTTGAAA CGGGTGAAACGTAAGGCAAAAGAAAAGGATGTAGAATTAGAATCTCAGGAAATAATAGAAAGACCGTTAATAGATAAGTT TTTGTTTGAGCTTGTGGAGGAAGGTGCAACAAAAATTGTGGTTGCTGGTCCCCAGTTACTTACTGCTAAAATGGGAGAAT TACCTCATATAGCAGAGTATATTGAGGAAGATTAG
Upstream 100 bases:
>100_bases AGCTTTTAAGCGCGGCTTATTGCTAAAATTAGTGGGAACTTTGATCTTCTTGGCAATGGCGAAATTTTATTGGCCTTTAT TTGGGTGGGGAGTGTAAAAT
Downstream 100 bases:
>100_bases TTAGACCTAATGTAGTTATTTTTTTTTGTACTCAGGTTTACTAATGGCTGGACTTACACAACTTTTAAGCTCGAATGTAG CCCAAACTTTTGTTTGAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MSIWLVIANPYAYDKAMWKAVSATQEHQGNLRVVFFINNNSIHDIIGELGQSGWLGSNPLHKLQSSMLEGYRALAGDVLK RVKRKAKEKDVELESQEIIERPLIDKFLFELVEEGATKIVVAGPQLLTAKMGELPHIAEYIEED
Sequences:
>Translated_144_residues MSIWLVIANPYAYDKAMWKAVSATQEHQGNLRVVFFINNNSIHDIIGELGQSGWLGSNPLHKLQSSMLEGYRALAGDVLK RVKRKAKEKDVELESQEIIERPLIDKFLFELVEEGATKIVVAGPQLLTAKMGELPHIAEYIEED >Mature_143_residues SIWLVIANPYAYDKAMWKAVSATQEHQGNLRVVFFINNNSIHDIIGELGQSGWLGSNPLHKLQSSMLEGYRALAGDVLKR VKRKAKEKDVELESQEIIERPLIDKFLFELVEEGATKIVVAGPQLLTAKMGELPHIAEYIEED
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16232; Mature: 16101
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIWLVIANPYAYDKAMWKAVSATQEHQGNLRVVFFINNNSIHDIIGELGQSGWLGSNPL CEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHH HKLQSSMLEGYRALAGDVLKRVKRKAKEKDVELESQEIIERPLIDKFLFELVEEGATKIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE VAGPQLLTAKMGELPHIAEYIEED EECCHHHHHHHCCCHHHHHHHCCC >Mature Secondary Structure SIWLVIANPYAYDKAMWKAVSATQEHQGNLRVVFFINNNSIHDIIGELGQSGWLGSNPL EEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHH HKLQSSMLEGYRALAGDVLKRVKRKAKEKDVELESQEIIERPLIDKFLFELVEEGATKIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE VAGPQLLTAKMGELPHIAEYIEED EECCHHHHHHHCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA