| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is gyrB [H]
Identifier: 113477398
GI number: 113477398
Start: 6122133
End: 6124808
Strand: Reverse
Name: gyrB [H]
Synonym: Tery_3961
Alternate gene names: 113477398
Gene position: 6124808-6122133 (Counterclockwise)
Preceding gene: 113477401
Following gene: 113477396
Centisome position: 79.03
GC content: 39.57
Gene sequence:
>2676_bases ATGGCCAGCAACAATTACGGTGCTGAACAAATACAAGTTTTGGAAGGTCTCGAAGCAGTACGCAAGCGACCGGGAATGTA CATCGGAACCACTGGGCCTCGTGGACTCCATCATCTAGTCTATGAAGTTGTTGACAACTCCATCGATGAGGCCCTAGCCG GTTATTGTACTCACATAGAAGTTGACCTGAACAAAGATGGTTCTGTCAAAGTTACGGATGATGGCCGAGGTATTCCAGTC GATACCCATTCAAAAACAGGTAAGTCAGCCTTAGAAACAGTAATGACTGTTCTCCATGCTGGAGGTAAATTTGGTGGAGG TGGGTATAAAGTTTCTGGGGGACTACACGGTGTGGGGGTTTCCGTAGTCAATGCCTTATCCGAGTGGGTAGAGGTAACAG TCTGGCGTGATAAAAAAACCCATATCCAAGGTTACGAACGGGGCCAACCTACTGGAGACTTAAAATCTAAACCTAACAAA GAAAAGCGCACAGGTACATCAGTACAGTTTCTCCCAGATCAGGAAATTTTTACTACAGGCATACAATTTGATTATAATAC CATAATTGGTCGTTTGCGAGAGCTAGCATATTTAAATGCAGGTGTCAAGATTACAATTACAGATAACCGCCTGGAGTTAG TCAAAAGCGATGAACCGAAAGTAGAATCTTATTGTTATGAGGGTGGTATTAAGGAATATGTCACCTACATGAACCGGGAA AAACAGTCTCTCCATGAAGAAGTGATTTTTGTCCGAGGGGAAAAGAATGATGTACAAGTAGAAGTAGCTTTGCAATGGTG CATAGATGCTTTTAGTGATAATGTTCTCGGTTTTGCCAACAATATTCGGACTATCGATGGTGGTACTCATTTGGAAGGGT TAAAGACAGTTTTAACTAGAACAATGAATGGTATTGCTCGCAAGCGCAATAAGCTCAAAGATAGTGATCCAAATTTAGGT GGTGAAAATGTTCGGGAAGGTTTGACGGCAGTTATTTCTGTAAAAGTTCCAGAACCAGAATTTGAAGGTCAAACCAAAAC TAAGTTAGGCAATACTGAAGTTAGGGGTATTGTTGATTCTTTGGTCGGAGAGGTTTTAAGTGAATATTTAGATTTTAATC CTCAAGTTGCTGATGCAGTTTTAGATAAAGCAATTCAAGCTTTTAAAGCAGCAGAAGCAGCCCGTAGAGCCAGGGATTTA GTGCGGAGAAAATCTGTTTTAGAATCTTCTCCATTACCAGGAAAACTAGCAGACTGCAGTACAAAAAACCCAGAAGAATC GGAGATATACCTAGTGGAAGGTGACAGTGCTTCTGGATGCTTTGCTGGGAATCAAAAAGTTATTTTAGCTGATGGACGTA GACTGAGTTTTGCAGAAATAGTAGCCGAACAAGCTGAGGGTAAAGAACATTTTTGTTATACAATTAATCAGAGTGGAAAT GTTGCCATTGAAAGGATAATTAATGCTAGAATAACCAAAAAAAATGCCTCAGTTATTAAGATAATTTTGGATAATAATGA AACTATAATTTGTACTCCAGACCATCTTTTTATGCTCAGGGATGGTAGTTATAAACCAGCAGCTTTATTAACAGGAAATG ATTCTTTAATGCCCCTGTCTCAAAAGTCATCTCAAAAGACAGAAAATAGCCAGGAATTAGATGGTTATGAAATGGTTTGG AGCCCTCAAAAAGAAAGTTGGATTTATACTCATTTATTGCCAGATTTTTATAACTTAAAAGCAGGAGTATATCAGTCAGC AAATGGAGACTCTTGTTATCATGTTGGCTTTAAGAAACTCAATTCTACCAAGACTGAGGGGCTGCTAACTGAGAAACACT TGGAATTCCATAAGACAAATCTTGAGTTGGCATATCGCTGTTCTGAAAGGGACGAATTTTTAGCGCGGGATATCATTCCT AACTATAATGATCACTATAATTATCGGGTTGTTTCTATTGAACCCCTTGAGGAGCGGTTAGATGTTTATGATATTGAAGT TCCCAATACTCATAATTTTGCCTTAGCTAGTGGAGTTTTTGTTCATAATAGTGCAAAACAAGGCCGCGACCGCCGTTTCC AAGCTATATTACCGTTGCGGGGTAAAATTATCAATATTGAAAAAACCGATGATGCCAAAATCTACAAAAATAATGAAATT CAATCAATGATTACAGCTTTGGGTTTGGGCATCAAAGGAGATGAATTTGACGCTTCTCAACTGCGGTATCATAAGGTAAT TATTATGACTGACGCTGATGTTGATGGTTCCCACATCCGCACCTTATTGTTAACGTTTTTCTATCGATACCAACGGGCCT TAGTAGACCAGGGTTATATCTATATTGCTTGCCCCCCATTGTACAAGGTAGAACGGGGTCGAAATCATTATTATTGTTAT AGCGATCGTGAACTTAATGAACTGATTCAAAATGAGTTTCCGGATAATGCTAACTATACTATCCAAAGATTTAAAGGTTT GGGTGAAATGATGCCAGTTCAGTTGTGGGATACAACCATGAACCCTGAAACTCGGACTTTGAAACGGGTGGAAATTGAAG ATGCTGCAGAAGCGGATCGGATATTTACAGTTTTGATGGGCGATCGGGTGGCACCGAGGCGTGAGTTTATTGAGACTTAC GGGCCGAAATTGAAAATTACTGATTTGGATATATAA
Upstream 100 bases:
>100_bases CCTAGAGTAGCTTTTAAGGCTATTATGCTATAATTTATGAGAAAAAAGTCATTTATTAACGAAAGTTAGTATTAAAGCCA TTATTGGGAGATATATTGAT
Downstream 100 bases:
>100_bases TCCCTTAAGGTTGGCAAATGTGAGTTGATTTTGGATGGTGTCACTCAACATTTGCTTACTCTAGAATGGTGATCAGCACT ATAGCAGTTTAGCTAGATAA
Product: DNA gyrase subunit B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 891; Mature: 890
Protein sequence:
>891_residues MASNNYGAEQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVDLNKDGSVKVTDDGRGIPV DTHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWRDKKTHIQGYERGQPTGDLKSKPNK EKRTGTSVQFLPDQEIFTTGIQFDYNTIIGRLRELAYLNAGVKITITDNRLELVKSDEPKVESYCYEGGIKEYVTYMNRE KQSLHEEVIFVRGEKNDVQVEVALQWCIDAFSDNVLGFANNIRTIDGGTHLEGLKTVLTRTMNGIARKRNKLKDSDPNLG GENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLSEYLDFNPQVADAVLDKAIQAFKAAEAARRARDL VRRKSVLESSPLPGKLADCSTKNPEESEIYLVEGDSASGCFAGNQKVILADGRRLSFAEIVAEQAEGKEHFCYTINQSGN VAIERIINARITKKNASVIKIILDNNETIICTPDHLFMLRDGSYKPAALLTGNDSLMPLSQKSSQKTENSQELDGYEMVW SPQKESWIYTHLLPDFYNLKAGVYQSANGDSCYHVGFKKLNSTKTEGLLTEKHLEFHKTNLELAYRCSERDEFLARDIIP NYNDHYNYRVVSIEPLEERLDVYDIEVPNTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEI QSMITALGLGIKGDEFDASQLRYHKVIIMTDADVDGSHIRTLLLTFFYRYQRALVDQGYIYIACPPLYKVERGRNHYYCY SDRELNELIQNEFPDNANYTIQRFKGLGEMMPVQLWDTTMNPETRTLKRVEIEDAAEADRIFTVLMGDRVAPRREFIETY GPKLKITDLDI
Sequences:
>Translated_891_residues MASNNYGAEQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVDLNKDGSVKVTDDGRGIPV DTHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWRDKKTHIQGYERGQPTGDLKSKPNK EKRTGTSVQFLPDQEIFTTGIQFDYNTIIGRLRELAYLNAGVKITITDNRLELVKSDEPKVESYCYEGGIKEYVTYMNRE KQSLHEEVIFVRGEKNDVQVEVALQWCIDAFSDNVLGFANNIRTIDGGTHLEGLKTVLTRTMNGIARKRNKLKDSDPNLG GENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLSEYLDFNPQVADAVLDKAIQAFKAAEAARRARDL VRRKSVLESSPLPGKLADCSTKNPEESEIYLVEGDSASGCFAGNQKVILADGRRLSFAEIVAEQAEGKEHFCYTINQSGN VAIERIINARITKKNASVIKIILDNNETIICTPDHLFMLRDGSYKPAALLTGNDSLMPLSQKSSQKTENSQELDGYEMVW SPQKESWIYTHLLPDFYNLKAGVYQSANGDSCYHVGFKKLNSTKTEGLLTEKHLEFHKTNLELAYRCSERDEFLARDIIP NYNDHYNYRVVSIEPLEERLDVYDIEVPNTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEI QSMITALGLGIKGDEFDASQLRYHKVIIMTDADVDGSHIRTLLLTFFYRYQRALVDQGYIYIACPPLYKVERGRNHYYCY SDRELNELIQNEFPDNANYTIQRFKGLGEMMPVQLWDTTMNPETRTLKRVEIEDAAEADRIFTVLMGDRVAPRREFIETY GPKLKITDLDI >Mature_890_residues ASNNYGAEQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVDLNKDGSVKVTDDGRGIPVD THSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWRDKKTHIQGYERGQPTGDLKSKPNKE KRTGTSVQFLPDQEIFTTGIQFDYNTIIGRLRELAYLNAGVKITITDNRLELVKSDEPKVESYCYEGGIKEYVTYMNREK QSLHEEVIFVRGEKNDVQVEVALQWCIDAFSDNVLGFANNIRTIDGGTHLEGLKTVLTRTMNGIARKRNKLKDSDPNLGG ENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLSEYLDFNPQVADAVLDKAIQAFKAAEAARRARDLV RRKSVLESSPLPGKLADCSTKNPEESEIYLVEGDSASGCFAGNQKVILADGRRLSFAEIVAEQAEGKEHFCYTINQSGNV AIERIINARITKKNASVIKIILDNNETIICTPDHLFMLRDGSYKPAALLTGNDSLMPLSQKSSQKTENSQELDGYEMVWS PQKESWIYTHLLPDFYNLKAGVYQSANGDSCYHVGFKKLNSTKTEGLLTEKHLEFHKTNLELAYRCSERDEFLARDIIPN YNDHYNYRVVSIEPLEERLDVYDIEVPNTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQ SMITALGLGIKGDEFDASQLRYHKVIIMTDADVDGSHIRTLLLTFFYRYQRALVDQGYIYIACPPLYKVERGRNHYYCYS DRELNELIQNEFPDNANYTIQRFKGLGEMMPVQLWDTTMNPETRTLKRVEIEDAAEADRIFTVLMGDRVAPRREFIETYG PKLKITDLDI
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0187
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the type II topoisomerase family [H]
Homologues:
Organism=Homo sapiens, GI19913408, Length=144, Percent_Identity=35.4166666666667, Blast_Score=89, Evalue=2e-17, Organism=Homo sapiens, GI19913406, Length=144, Percent_Identity=34.7222222222222, Blast_Score=89, Evalue=2e-17, Organism=Escherichia coli, GI48994957, Length=439, Percent_Identity=51.7084282460137, Blast_Score=411, Evalue=1e-115, Organism=Escherichia coli, GI1789408, Length=439, Percent_Identity=39.4077448747153, Blast_Score=279, Evalue=7e-76, Organism=Caenorhabditis elegans, GI17535065, Length=145, Percent_Identity=35.1724137931034, Blast_Score=87, Evalue=4e-17, Organism=Caenorhabditis elegans, GI212645845, Length=140, Percent_Identity=32.1428571428571, Blast_Score=80, Evalue=6e-15, Organism=Caenorhabditis elegans, GI212645657, Length=147, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6324241, Length=198, Percent_Identity=28.2828282828283, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI17136538, Length=144, Percent_Identity=34.0277777777778, Blast_Score=79, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011557 - InterPro: IPR003586 - InterPro: IPR003587 - InterPro: IPR006141 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR001241 - InterPro: IPR013759 - InterPro: IPR002288 - InterPro: IPR013506 - InterPro: IPR013760 - InterPro: IPR018522 [H]
Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 100087; Mature: 99956
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: PS50817 INTEIN_N_TER ; PS50818 INTEIN_C_TER ; PS00177 TOPOISOMERASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASNNYGAEQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIE CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCHHHHHHHCEEEEEE VDLNKDGSVKVTDDGRGIPVDTHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGV EEECCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHH SVVNALSEWVEVTVWRDKKTHIQGYERGQPTGDLKSKPNKEKRTGTSVQFLPDQEIFTTG HHHHHHHHHHEEEEEECCCHHCCCCCCCCCCCCCCCCCCCHHCCCCCEEECCCCCCEEEC IQFDYNTIIGRLRELAYLNAGVKITITDNRLELVKSDEPKVESYCYEGGIKEYVTYMNRE CEEEHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHH KQSLHEEVIFVRGEKNDVQVEVALQWCIDAFSDNVLGFANNIRTIDGGTHLEGLKTVLTR HHHHCCEEEEEECCCCCEEEEEHHHHHHHHHCCCCEECCCCEEEECCCCCHHHHHHHHHH TMNGIARKRNKLKDSDPNLGGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDS HHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCHHCCCCHHHHHHHHH LVGEVLSEYLDFNPQVADAVLDKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCS HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC TKNPEESEIYLVEGDSASGCFAGNQKVILADGRRLSFAEIVAEQAEGKEHFCYTINQSGN CCCCCCCEEEEEECCCCCCEECCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC VAIERIINARITKKNASVIKIILDNNETIICTPDHLFMLRDGSYKPAALLTGNDSLMPLS CHHHHHHHHHEEECCCEEEEEEEECCCEEEECCCEEEEEECCCCCCEEEEECCCCCCCCC QKSSQKTENSQELDGYEMVWSPQKESWIYTHLLPDFYNLKAGVYQSANGDSCYHVGFKKL CCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCHHHCCCCEEECCCCCCEEEHHHHHH NSTKTEGLLTEKHLEFHKTNLELAYRCSERDEFLARDIIPNYNDHYNYRVVSIEPLEERL CCCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHCC DVYDIEVPNTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEI CEEEEECCCCCCEEEECCEEEECCHHCCCCCEEEEEECCCCEEEEEECCCCCEEEECCHH QSMITALGLGIKGDEFDASQLRYHKVIIMTDADVDGSHIRTLLLTFFYRYQRALVDQGYI HHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEE YIACPPLYKVERGRNHYYCYSDRELNELIQNEFPDNANYTIQRFKGLGEMMPVQLWDTTM EEECCCCHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEECCCC NPETRTLKRVEIEDAAEADRIFTVLMGDRVAPRREFIETYGPKLKITDLDI CCCCHHEEEEECCCCCCHHHEEEEEECCCCCCHHHHHHHCCCEEEEEECCC >Mature Secondary Structure ASNNYGAEQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIE CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCHHHHHHHCEEEEEE VDLNKDGSVKVTDDGRGIPVDTHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGV EEECCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHH SVVNALSEWVEVTVWRDKKTHIQGYERGQPTGDLKSKPNKEKRTGTSVQFLPDQEIFTTG HHHHHHHHHHEEEEEECCCHHCCCCCCCCCCCCCCCCCCCHHCCCCCEEECCCCCCEEEC IQFDYNTIIGRLRELAYLNAGVKITITDNRLELVKSDEPKVESYCYEGGIKEYVTYMNRE CEEEHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHH KQSLHEEVIFVRGEKNDVQVEVALQWCIDAFSDNVLGFANNIRTIDGGTHLEGLKTVLTR HHHHCCEEEEEECCCCCEEEEEHHHHHHHHHCCCCEECCCCEEEECCCCCHHHHHHHHHH TMNGIARKRNKLKDSDPNLGGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDS HHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCHHCCCCHHHHHHHHH LVGEVLSEYLDFNPQVADAVLDKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCS HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC TKNPEESEIYLVEGDSASGCFAGNQKVILADGRRLSFAEIVAEQAEGKEHFCYTINQSGN CCCCCCCEEEEEECCCCCCEECCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC VAIERIINARITKKNASVIKIILDNNETIICTPDHLFMLRDGSYKPAALLTGNDSLMPLS CHHHHHHHHHEEECCCEEEEEEEECCCEEEECCCEEEEEECCCCCCEEEEECCCCCCCCC QKSSQKTENSQELDGYEMVWSPQKESWIYTHLLPDFYNLKAGVYQSANGDSCYHVGFKKL CCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCHHHCCCCEEECCCCCCEEEHHHHHH NSTKTEGLLTEKHLEFHKTNLELAYRCSERDEFLARDIIPNYNDHYNYRVVSIEPLEERL CCCCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHCC DVYDIEVPNTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEI CEEEEECCCCCCEEEECCEEEECCHHCCCCCEEEEEECCCCEEEEEECCCCCEEEECCHH QSMITALGLGIKGDEFDASQLRYHKVIIMTDADVDGSHIRTLLLTFFYRYQRALVDQGYI HHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEE YIACPPLYKVERGRNHYYCYSDRELNELIQNEFPDNANYTIQRFKGLGEMMPVQLWDTTM EEECCCCHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEECCCC NPETRTLKRVEIEDAAEADRIFTVLMGDRVAPRREFIETYGPKLKITDLDI CCCCHHEEEEECCCCCCHHHEEEEEECCCCCCHHHHHHHCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]