| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477371
Identifier: 113477371
GI number: 113477371
Start: 6070522
End: 6071931
Strand: Reverse
Name: 113477371
Synonym: Tery_3928
Alternate gene names: NA
Gene position: 6071931-6070522 (Counterclockwise)
Preceding gene: 113477372
Following gene: 113477370
Centisome position: 78.35
GC content: 30.85
Gene sequence:
>1410_bases ATGTCACATAATTCTGGTTTACTAGTGACTAATAATTCTACTGCTATTAGCGCTATCAGCCGCTATATTTACCAAACTAT TGTTTCTATTCAAAAGCAACATCCAGAGTTGATAACCTCAAAGTATAGGAGTATTCCTTGGCAGGATCCCAAGTATCAGT CTACTTTAACTAATAAATTTAGAAAAGGGCTTTCTCATGTTAAAAGTAAAGATGTTTTAAAGCTAAAAGTAAAAAATTAT CTCCAAATCATCTTCACTCCAGAATTTATTAACTCTGCTCAATATGATGTTTTAATTTCTGAAATAGACAAACATATTTA TTCAGAAATAACCCTAGTTTCATCAGATAAAATTACCAATTATAAAGCATCTAATTTCTCTACAAATGGCACTAAATTAG TAGAGTCAGGAATTGCTATTTTACTATTAGATGTAGAAAATTTACCACTTGATTTGGAAGCAGAAAAAATTCTTGTAGAT ATCTGCAATTATCCAATTCAAATTAAAGTTGCTTTTGCCAACTGGCACAGTATGGGTAAAAAAGATGAAGAATTTCATCA ACGTGGTTATCAACTAATTCATGTTCCTCGTGGAAAAGATAGTGCTGACTTAAAAATGGCAACGGTAGGTGCTTCTATTT TTCTCAATTATCCCAAAGCTAAGGAGATTTTAGTTTGTTCTTCTGACCGAGGATTAACTCATCTTGGTACTACTTTACAA TCTCATGGGTTAACTGTGTATCAGGTGCGAAAATATAAAAATCAAATTACAGTTTTAAATAGTAAAACTGGAGAATCAAA AATATATGCTTTGTCGGAACCAGAAATTCCTAGTATTAATAAATTTATTATTCAATTGCAGGAATTAATTAGAACAGAAG CAGTAAAAATTGGACAGCAATGGATTAAATTCTCCAGAATTTCTGCTTTGTATAAGGAAACTTATAAGTTAAATCTTAAA GATGTAGTTCAAACCTACTTTCCTAGTCAAAATTCAAATCATATATTTATCAACTATCCAGTTTATTTTGCACTTCATAA GCCATCAGAAAAATCTCAAACTTATGTAAGTATTTTTAACCAATTTAAACCCGAAAAAAAAAAAAATCATCCTCCTCTAA ATAAGGTAGAAAACAACACTACAGTCACAAATATTTCTCAGATTACTTCTCAGGAAGATATCGAAAAAGTATTAGTTAAA ATTTTGAGCAACTTAACTGCTGAATCTCCAGGAAGTTATATTCCTATTTCTAATCTGGGCAGTGAGTTTTATCGGTTATA TGGTCAACCAATTACAACAGCTATTAAGCAGTTTCAACCAAGTAAAAAGTTTCCTAAGTTTTTGGAGTTATGTAGTGCTC TGCAGTTGTATCAATCTCAAGAAGGTCGTTGGTTTGTCAGCTTAAGTTAA
Upstream 100 bases:
>100_bases AATATCAAAAAATAGCCTAATGTCATCTTGATCTTGTATTATTAAAATATATATTTCTCAAGACGTTTTATTCAAGCCTA TATAAATTAGGCAATAGGCC
Downstream 100 bases:
>100_bases AAATCAAAAGTTAAAAAGTTTTTCCTCTCCACAAATGAATCTAAAAGTTGACATCTAATTGATTTTTTGTAAAAATACAG CGGATTTCAGATTATAGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MSHNSGLLVTNNSTAISAISRYIYQTIVSIQKQHPELITSKYRSIPWQDPKYQSTLTNKFRKGLSHVKSKDVLKLKVKNY LQIIFTPEFINSAQYDVLISEIDKHIYSEITLVSSDKITNYKASNFSTNGTKLVESGIAILLLDVENLPLDLEAEKILVD ICNYPIQIKVAFANWHSMGKKDEEFHQRGYQLIHVPRGKDSADLKMATVGASIFLNYPKAKEILVCSSDRGLTHLGTTLQ SHGLTVYQVRKYKNQITVLNSKTGESKIYALSEPEIPSINKFIIQLQELIRTEAVKIGQQWIKFSRISALYKETYKLNLK DVVQTYFPSQNSNHIFINYPVYFALHKPSEKSQTYVSIFNQFKPEKKKNHPPLNKVENNTTVTNISQITSQEDIEKVLVK ILSNLTAESPGSYIPISNLGSEFYRLYGQPITTAIKQFQPSKKFPKFLELCSALQLYQSQEGRWFVSLS
Sequences:
>Translated_469_residues MSHNSGLLVTNNSTAISAISRYIYQTIVSIQKQHPELITSKYRSIPWQDPKYQSTLTNKFRKGLSHVKSKDVLKLKVKNY LQIIFTPEFINSAQYDVLISEIDKHIYSEITLVSSDKITNYKASNFSTNGTKLVESGIAILLLDVENLPLDLEAEKILVD ICNYPIQIKVAFANWHSMGKKDEEFHQRGYQLIHVPRGKDSADLKMATVGASIFLNYPKAKEILVCSSDRGLTHLGTTLQ SHGLTVYQVRKYKNQITVLNSKTGESKIYALSEPEIPSINKFIIQLQELIRTEAVKIGQQWIKFSRISALYKETYKLNLK DVVQTYFPSQNSNHIFINYPVYFALHKPSEKSQTYVSIFNQFKPEKKKNHPPLNKVENNTTVTNISQITSQEDIEKVLVK ILSNLTAESPGSYIPISNLGSEFYRLYGQPITTAIKQFQPSKKFPKFLELCSALQLYQSQEGRWFVSLS >Mature_468_residues SHNSGLLVTNNSTAISAISRYIYQTIVSIQKQHPELITSKYRSIPWQDPKYQSTLTNKFRKGLSHVKSKDVLKLKVKNYL QIIFTPEFINSAQYDVLISEIDKHIYSEITLVSSDKITNYKASNFSTNGTKLVESGIAILLLDVENLPLDLEAEKILVDI CNYPIQIKVAFANWHSMGKKDEEFHQRGYQLIHVPRGKDSADLKMATVGASIFLNYPKAKEILVCSSDRGLTHLGTTLQS HGLTVYQVRKYKNQITVLNSKTGESKIYALSEPEIPSINKFIIQLQELIRTEAVKIGQQWIKFSRISALYKETYKLNLKD VVQTYFPSQNSNHIFINYPVYFALHKPSEKSQTYVSIFNQFKPEKKKNHPPLNKVENNTTVTNISQITSQEDIEKVLVKI LSNLTAESPGSYIPISNLGSEFYRLYGQPITTAIKQFQPSKKFPKFLELCSALQLYQSQEGRWFVSLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53522; Mature: 53391
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHNSGLLVTNNSTAISAISRYIYQTIVSIQKQHPELITSKYRSIPWQDPKYQSTLTNKF CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHH RKGLSHVKSKDVLKLKVKNYLQIIFTPEFINSAQYDVLISEIDKHIYSEITLVSSDKITN HHHHHHHCCCCCEEEECCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHEEEEECCCCCC YKASNFSTNGTKLVESGIAILLLDVENLPLDLEAEKILVDICNYPIQIKVAFANWHSMGK EECCCCCCCCHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEEECHHHCCC KDEEFHQRGYQLIHVPRGKDSADLKMATVGASIFLNYPKAKEILVCSSDRGLTHLGTTLQ CCHHHHHCCCEEEEECCCCCCCCEEEEEECEEEEEECCCCCEEEEECCCCCCHHHHHHHH SHGLTVYQVRKYKNQITVLNSKTGESKIYALSEPEIPSINKFIIQLQELIRTEAVKIGQQ HCCCEEEEEHHHCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH WIKFSRISALYKETYKLNLKDVVQTYFPSQNSNHIFINYPVYFALHKPSEKSQTYVSIFN HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHH QFKPEKKKNHPPLNKVENNTTVTNISQITSQEDIEKVLVKILSNLTAESPGSYIPISNLG HHCCCHHCCCCCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH SEFYRLYGQPITTAIKQFQPSKKFPKFLELCSALQLYQSQEGRWFVSLS HHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC >Mature Secondary Structure SHNSGLLVTNNSTAISAISRYIYQTIVSIQKQHPELITSKYRSIPWQDPKYQSTLTNKF CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHH RKGLSHVKSKDVLKLKVKNYLQIIFTPEFINSAQYDVLISEIDKHIYSEITLVSSDKITN HHHHHHHCCCCCEEEECCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHEEEEECCCCCC YKASNFSTNGTKLVESGIAILLLDVENLPLDLEAEKILVDICNYPIQIKVAFANWHSMGK EECCCCCCCCHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEEEECHHHCCC KDEEFHQRGYQLIHVPRGKDSADLKMATVGASIFLNYPKAKEILVCSSDRGLTHLGTTLQ CCHHHHHCCCEEEEECCCCCCCCEEEEEECEEEEEECCCCCEEEEECCCCCCHHHHHHHH SHGLTVYQVRKYKNQITVLNSKTGESKIYALSEPEIPSINKFIIQLQELIRTEAVKIGQQ HCCCEEEEEHHHCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH WIKFSRISALYKETYKLNLKDVVQTYFPSQNSNHIFINYPVYFALHKPSEKSQTYVSIFN HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHH QFKPEKKKNHPPLNKVENNTTVTNISQITSQEDIEKVLVKILSNLTAESPGSYIPISNLG HHCCCHHCCCCCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH SEFYRLYGQPITTAIKQFQPSKKFPKFLELCSALQLYQSQEGRWFVSLS HHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA