| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477341
Identifier: 113477341
GI number: 113477341
Start: 6018552
End: 6019571
Strand: Reverse
Name: 113477341
Synonym: Tery_3894
Alternate gene names: NA
Gene position: 6019571-6018552 (Counterclockwise)
Preceding gene: 113477342
Following gene: 113477338
Centisome position: 77.67
GC content: 39.61
Gene sequence:
>1020_bases ATGAGTTCAGAATTGAAAAGGCTCGAGCAGATAAATGAAGAATTGGTAAGAGTTCCTAATTTAACCCGCCATGAATTACT AGGTATGAAAGTGATTCAAGAGAGCCAAGAATTGGTTCATCGAGTTGGTGCTACAAACAAACCTACACAAAGTCTTCCAT TCACTAAATTATATCTGCCGATGGCCTTCACAGGTATCTTAGAACCAAAGAAGTTAGTTGATAAGACTCATCGTGCAATC CAAATCCTATTACCTGGTACAGGAACAACCTTTTCTGTTGCCGAGACCTTATGCGATGTTGCAGGCACTTTTCATGGCCG AAAAAGCAAGAATCGTGGAACTGGACGAAAAAGCAACCAAAGTTTATTAACTGAATTATTACCTGAGGGTGAGACATTCC GTGTGGCTTCTTTTCCTGCCGATCTTCCACTTAACGGCATGGGTTCAGATGCTCCATTTGAATTTGCCAGCGAGCATGGT CTTATGACAATAATTCGCCATGTTCATCTTGTATTGTCGCGACTTTATCCTGATCGCCCAGTTTTTATTGCTGGACGTAG TCAAGGTGGTATAGCAGGTATAATGTATGCACAACATTATCATGACTTGGCTGGAGCAATAGCAGTTAATCCACCACATC CAGATCCAGAACTATTTCAATTTACTGTTCAATATTTGGAGGAGAAAGCTGGAATTCTAGCAGATCTTCTCCATGCTCCA GGTGTCACTTTACACGATTATAGTTGGGAAGCCTACAAGACTTTCACACCGAACTTTAATTATCCATCTAGACCATCTCT ATCTCCAATCCTAATTTTGGTTAGCTTGGGCGACCCTTTCAATTTATTTCCTCAGTATCTTCATAAGCTGCAGGAATTTG CAGAAAATGACGAAAAATGTAAGTTGCATATACTTGATGCAGGACACAATCTTTGGGATAGGAAATCCGTGGATACATAT CAAGATGTAATTAATTTGCACATCCAATTTATGTTGAACCAAATTAAATTCAGATTGTAA
Upstream 100 bases:
>100_bases AGAAAGTCCTAGACCAACCAGAATGGACTCCTATTGATTCTAAAGTGATGCCAATTTACGATGACCCTATTTATCTTTTA GCGTACAAAATTCGGAAACA
Downstream 100 bases:
>100_bases AAACTATGTACCATGTCACTATATTAGGAACTGGAAAAATTGGGTCGGCGATCGCTAAACTTTTACATTACAGCAGTGAT TAAATCATAATGGTTAGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MSSELKRLEQINEELVRVPNLTRHELLGMKVIQESQELVHRVGATNKPTQSLPFTKLYLPMAFTGILEPKKLVDKTHRAI QILLPGTGTTFSVAETLCDVAGTFHGRKSKNRGTGRKSNQSLLTELLPEGETFRVASFPADLPLNGMGSDAPFEFASEHG LMTIIRHVHLVLSRLYPDRPVFIAGRSQGGIAGIMYAQHYHDLAGAIAVNPPHPDPELFQFTVQYLEEKAGILADLLHAP GVTLHDYSWEAYKTFTPNFNYPSRPSLSPILILVSLGDPFNLFPQYLHKLQEFAENDEKCKLHILDAGHNLWDRKSVDTY QDVINLHIQFMLNQIKFRL
Sequences:
>Translated_339_residues MSSELKRLEQINEELVRVPNLTRHELLGMKVIQESQELVHRVGATNKPTQSLPFTKLYLPMAFTGILEPKKLVDKTHRAI QILLPGTGTTFSVAETLCDVAGTFHGRKSKNRGTGRKSNQSLLTELLPEGETFRVASFPADLPLNGMGSDAPFEFASEHG LMTIIRHVHLVLSRLYPDRPVFIAGRSQGGIAGIMYAQHYHDLAGAIAVNPPHPDPELFQFTVQYLEEKAGILADLLHAP GVTLHDYSWEAYKTFTPNFNYPSRPSLSPILILVSLGDPFNLFPQYLHKLQEFAENDEKCKLHILDAGHNLWDRKSVDTY QDVINLHIQFMLNQIKFRL >Mature_338_residues SSELKRLEQINEELVRVPNLTRHELLGMKVIQESQELVHRVGATNKPTQSLPFTKLYLPMAFTGILEPKKLVDKTHRAIQ ILLPGTGTTFSVAETLCDVAGTFHGRKSKNRGTGRKSNQSLLTELLPEGETFRVASFPADLPLNGMGSDAPFEFASEHGL MTIIRHVHLVLSRLYPDRPVFIAGRSQGGIAGIMYAQHYHDLAGAIAVNPPHPDPELFQFTVQYLEEKAGILADLLHAPG VTLHDYSWEAYKTFTPNFNYPSRPSLSPILILVSLGDPFNLFPQYLHKLQEFAENDEKCKLHILDAGHNLWDRKSVDTYQ DVINLHIQFMLNQIKFRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38197; Mature: 38066
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSELKRLEQINEELVRVPNLTRHELLGMKVIQESQELVHRVGATNKPTQSLPFTKLYLP CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH MAFTGILEPKKLVDKTHRAIQILLPGTGTTFSVAETLCDVAGTFHGRKSKNRGTGRKSNQ HHHHHCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH SLLTELLPEGETFRVASFPADLPLNGMGSDAPFEFASEHGLMTIIRHVHLVLSRLYPDRP HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCC VFIAGRSQGGIAGIMYAQHYHDLAGAIAVNPPHPDPELFQFTVQYLEEKAGILADLLHAP EEEEECCCCCEEEHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC GVTLHDYSWEAYKTFTPNFNYPSRPSLSPILILVSLGDPFNLFPQYLHKLQEFAENDEKC CCEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCE KLHILDAGHNLWDRKSVDTYQDVINLHIQFMLNQIKFRL EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SSELKRLEQINEELVRVPNLTRHELLGMKVIQESQELVHRVGATNKPTQSLPFTKLYLP CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH MAFTGILEPKKLVDKTHRAIQILLPGTGTTFSVAETLCDVAGTFHGRKSKNRGTGRKSNQ HHHHHCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH SLLTELLPEGETFRVASFPADLPLNGMGSDAPFEFASEHGLMTIIRHVHLVLSRLYPDRP HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCC VFIAGRSQGGIAGIMYAQHYHDLAGAIAVNPPHPDPELFQFTVQYLEEKAGILADLLHAP EEEEECCCCCEEEHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC GVTLHDYSWEAYKTFTPNFNYPSRPSLSPILILVSLGDPFNLFPQYLHKLQEFAENDEKC CCEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCE KLHILDAGHNLWDRKSVDTYQDVINLHIQFMLNQIKFRL EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA