| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is comEC [H]
Identifier: 113477315
GI number: 113477315
Start: 5974812
End: 5977262
Strand: Reverse
Name: comEC [H]
Synonym: Tery_3864
Alternate gene names: 113477315
Gene position: 5977262-5974812 (Counterclockwise)
Preceding gene: 113477316
Following gene: 113477313
Centisome position: 77.12
GC content: 37.62
Gene sequence:
>2451_bases ATGAATCAAGCTGTAGTGATCGTTATCTGCCTAGCTTATATAATGGGGCTATTATCTACTATTTTACCTTGGGGTATATA TGCTGTAGTAACTATAGGATTATTATTAGCAACTATTGCACAACAAATATACCGACAAAATTTACGTAAGTTAACTAGAG AAATGACAGCTTCTGAGCAAGAAATAAGTTCTGAAGACTTACTCAGAAGTAATAAACTTCAAGACTTACTCACCAGAAGA ACTAGAAAAAACTTACTAAACTCAAATTGGTTGTGGATAACTGCAGGAGCGATCGCTCTGCTGGCAAGTATTTATTTTCA ATGGCGAGTACCCCAACCCACAGCAAGCGACATTAGTAAAATTATTTCACTTGATGGAGAGTCTCAACAACAAGTAGTTA TTGTTCGAGGCAAAGTTCTTTCTGTTCCCCGCACAACTCGCTCAGGAAAAGCCCAACTTTGGTTAAAAGCATCTCAAGTT AGTGAAGTAGTTGGTACTGGCGGCTCCGCAAACGTACACCAAGATGTGACAGGAAAGGTTTACGTTACAATACCACTTTT GCAAGCAACAGGTATTTATCCTAATGAATTAGTAGCAATAACCGGCTCTTTATATAGACCATCACCAGCAACTAACCCTG GAGGCTTTGATTTTCGCGCTTATTTAGCTAGAGAAGGTGCTTTTGCCGGAGTTACAGGTTATAAAATTACTGAGCTGAAC CAAGAAAATAATGTTTGGGGTTTATATAAAATTCGGCAGAGAATTATTCGCGCTCAGGTAAAGTTCTTAGGTGTGCCAGA AGGTCCTCTAGTAAGTGCTATGGTTTTAGGGCGTAAGGCCGTAGATTTTTCCTATCAACTACGAGACCAATTTATACAGG TAGGTTTAGCTCATATATTGGCAGCATCAGGTTTTCATGTTTCCCTAATTTTGGGTGCAGTCCTGACCTTAACTAAAAAA ATGTCTTCAGGAAAAAGATTTAGTTTTGGTATCCTGCTCCTAAGTATATACGTCGCTTTTACAGGTTTTGTACCTTCAGT ATTGCGAGCAGCTTTGATGGGTTTAGCCACTTTGCTAGGAATTGTTTTCCAACGCATGGTTAAACCATTAGTTTCTCTAC TTTTAGCTGCTACTTTGCTGTTATTAATTAATCCCTTGTGGATTTGGAATTTAGGGTTTCAGTTGAGTTTTTTGGCGACT CTTGGGCTATTGGTAACATTGCCACCTTTAACAAAACGCTTAAATATGTTGCCCTCCGGTATTGCCTATTTAGCTGCTAT TTATATTTCTGCTTCTGTTTGGGTGTTACCTCTATTGTTATCTGTGTTTTATGTAGTTTCGCCCTATGCTATTTTAGTGA ATATTATTGTTGCACCTCTGGTGACTGTAATTACTGTAGGTGGATTTATTAGTGCAATGCTAGCCTTAATTTACCCCGAT GCAGGGAGCTTGAGCGCTATGATTTTACATTTTCCAGTTAAGATTTTGATTGAAATTGTACAGTTTTTTAGCAGGTTACC AGGAAATCAAGTTGCAGTGGGAGCAATATCCGTTTATCAGTTAGTTGTGCTATATGGGTTGATTTTTACCACATGGTTTT TGGAAAGTAAAACTCCAGAAGTAGACAAGGGTAAGAAGAAAAAGTTCTCTCTGAAGCTTTGGCAGTGGAGTTTGCTCTTG GCGATCGCTATTATTATTATTCCTCTGTGGTATACTCGGACCTCTGTATTTCAAGCTACCATTCTTGACTCACCCTCCAA ACCAGTTTTTGTTATTCAAGATCAAGGTAAAGTAATTTTGGTCAATGCTGGAGATGAAAATACAGCCAGGTTTAAAGTGT TACCATTCTTACGGCAGCAAGGTATTAATAAAATTGATTGGTCTATTGATCTTCATTCCCAAAAAGGTCTAAGTCGTGGG TGGCCATATGTTTTTGAAAGCTTGAAAATTAAAACTTTTTATGATGTGGAAACTGATGAGGAAAAAGGTTATCAAACTAA TAATCAACCCGTGTTTAATGCTCTGCAAAAGATTAAAGCTAATTACTATACTGTGATAAAGAATCAAAATGTTGACTTAG GTTCTACCCAGATGAAATTAATTAACTCTGAGACCCCAATCGTAAAATTTATGATTCATGGCCAAAGTTGGTTATTATTG GGGAATACTGAGCTATCTCAACAAAGTAAGTTATTAGCAGAAAAAAGTTTTCAGCCAACAGAAGTGCTTTGGTGGTCCGG GAATAAGCTGAATGCAGAGTTATTGAATATTATTCGGCCAAAAGTAGCGATCGCTTCTTCAGACTCTGTCCATCCAGATA TGATTGAATTTTTTCAAGAAAATAATATTCCTCTATTTTGGACAGGTCGTGATGGCGCCATTCAATGGACTCCTATTACT GGCTTTCAAAGTACTTTAGAATTAGATCAGTCTGATAGTTCTTTCCTGTGA
Upstream 100 bases:
>100_bases TTGAAGGGGCTAAAGTCTAACTACAAAAAATAAATAAGGGTAGTAGTTAGGATCCAGCAATGTATATTTAAGTTGAAGAA GCTAAAGTCTAACGACAAAA
Downstream 100 bases:
>100_bases TATAATCAAAAATATGATACTTTAAATCATCAAAATAAATAGTCAAAACTCCAAAATAACTTTTAATATCTAAGTTTGGA CTTTTAACTTTTATTGTTTT
Product: ComEC/Rec2-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 816; Mature: 816
Protein sequence:
>816_residues MNQAVVIVICLAYIMGLLSTILPWGIYAVVTIGLLLATIAQQIYRQNLRKLTREMTASEQEISSEDLLRSNKLQDLLTRR TRKNLLNSNWLWITAGAIALLASIYFQWRVPQPTASDISKIISLDGESQQQVVIVRGKVLSVPRTTRSGKAQLWLKASQV SEVVGTGGSANVHQDVTGKVYVTIPLLQATGIYPNELVAITGSLYRPSPATNPGGFDFRAYLAREGAFAGVTGYKITELN QENNVWGLYKIRQRIIRAQVKFLGVPEGPLVSAMVLGRKAVDFSYQLRDQFIQVGLAHILAASGFHVSLILGAVLTLTKK MSSGKRFSFGILLLSIYVAFTGFVPSVLRAALMGLATLLGIVFQRMVKPLVSLLLAATLLLLINPLWIWNLGFQLSFLAT LGLLVTLPPLTKRLNMLPSGIAYLAAIYISASVWVLPLLLSVFYVVSPYAILVNIIVAPLVTVITVGGFISAMLALIYPD AGSLSAMILHFPVKILIEIVQFFSRLPGNQVAVGAISVYQLVVLYGLIFTTWFLESKTPEVDKGKKKKFSLKLWQWSLLL AIAIIIIPLWYTRTSVFQATILDSPSKPVFVIQDQGKVILVNAGDENTARFKVLPFLRQQGINKIDWSIDLHSQKGLSRG WPYVFESLKIKTFYDVETDEEKGYQTNNQPVFNALQKIKANYYTVIKNQNVDLGSTQMKLINSETPIVKFMIHGQSWLLL GNTELSQQSKLLAEKSFQPTEVLWWSGNKLNAELLNIIRPKVAIASSDSVHPDMIEFFQENNIPLFWTGRDGAIQWTPIT GFQSTLELDQSDSSFL
Sequences:
>Translated_816_residues MNQAVVIVICLAYIMGLLSTILPWGIYAVVTIGLLLATIAQQIYRQNLRKLTREMTASEQEISSEDLLRSNKLQDLLTRR TRKNLLNSNWLWITAGAIALLASIYFQWRVPQPTASDISKIISLDGESQQQVVIVRGKVLSVPRTTRSGKAQLWLKASQV SEVVGTGGSANVHQDVTGKVYVTIPLLQATGIYPNELVAITGSLYRPSPATNPGGFDFRAYLAREGAFAGVTGYKITELN QENNVWGLYKIRQRIIRAQVKFLGVPEGPLVSAMVLGRKAVDFSYQLRDQFIQVGLAHILAASGFHVSLILGAVLTLTKK MSSGKRFSFGILLLSIYVAFTGFVPSVLRAALMGLATLLGIVFQRMVKPLVSLLLAATLLLLINPLWIWNLGFQLSFLAT LGLLVTLPPLTKRLNMLPSGIAYLAAIYISASVWVLPLLLSVFYVVSPYAILVNIIVAPLVTVITVGGFISAMLALIYPD AGSLSAMILHFPVKILIEIVQFFSRLPGNQVAVGAISVYQLVVLYGLIFTTWFLESKTPEVDKGKKKKFSLKLWQWSLLL AIAIIIIPLWYTRTSVFQATILDSPSKPVFVIQDQGKVILVNAGDENTARFKVLPFLRQQGINKIDWSIDLHSQKGLSRG WPYVFESLKIKTFYDVETDEEKGYQTNNQPVFNALQKIKANYYTVIKNQNVDLGSTQMKLINSETPIVKFMIHGQSWLLL GNTELSQQSKLLAEKSFQPTEVLWWSGNKLNAELLNIIRPKVAIASSDSVHPDMIEFFQENNIPLFWTGRDGAIQWTPIT GFQSTLELDQSDSSFL >Mature_816_residues MNQAVVIVICLAYIMGLLSTILPWGIYAVVTIGLLLATIAQQIYRQNLRKLTREMTASEQEISSEDLLRSNKLQDLLTRR TRKNLLNSNWLWITAGAIALLASIYFQWRVPQPTASDISKIISLDGESQQQVVIVRGKVLSVPRTTRSGKAQLWLKASQV SEVVGTGGSANVHQDVTGKVYVTIPLLQATGIYPNELVAITGSLYRPSPATNPGGFDFRAYLAREGAFAGVTGYKITELN QENNVWGLYKIRQRIIRAQVKFLGVPEGPLVSAMVLGRKAVDFSYQLRDQFIQVGLAHILAASGFHVSLILGAVLTLTKK MSSGKRFSFGILLLSIYVAFTGFVPSVLRAALMGLATLLGIVFQRMVKPLVSLLLAATLLLLINPLWIWNLGFQLSFLAT LGLLVTLPPLTKRLNMLPSGIAYLAAIYISASVWVLPLLLSVFYVVSPYAILVNIIVAPLVTVITVGGFISAMLALIYPD AGSLSAMILHFPVKILIEIVQFFSRLPGNQVAVGAISVYQLVVLYGLIFTTWFLESKTPEVDKGKKKKFSLKLWQWSLLL AIAIIIIPLWYTRTSVFQATILDSPSKPVFVIQDQGKVILVNAGDENTARFKVLPFLRQQGINKIDWSIDLHSQKGLSRG WPYVFESLKIKTFYDVETDEEKGYQTNNQPVFNALQKIKANYYTVIKNQNVDLGSTQMKLINSETPIVKFMIHGQSWLLL GNTELSQQSKLLAEKSFQPTEVLWWSGNKLNAELLNIIRPKVAIASSDSVHPDMIEFFQENNIPLFWTGRDGAIQWTPIT GFQSTLELDQSDSSFL
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 90613; Mature: 90613
Theoretical pI: Translated: 10.12; Mature: 10.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQAVVIVICLAYIMGLLSTILPWGIYAVVTIGLLLATIAQQIYRQNLRKLTREMTASEQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH EISSEDLLRSNKLQDLLTRRTRKNLLNSNWLWITAGAIALLASIYFQWRVPQPTASDISK HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHEECCCCCHHHHHH IISLDGESQQQVVIVRGKVLSVPRTTRSGKAQLWLKASQVSEVVGTGGSANVHQDVTGKV HHHCCCCCCCEEEEEECEEEECCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCEE YVTIPLLQATGIYPNELVAITGSLYRPSPATNPGGFDFRAYLAREGAFAGVTGYKITELN EEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEC QENNVWGLYKIRQRIIRAQVKFLGVPEGPLVSAMVLGRKAVDFSYQLRDQFIQVGLAHIL CCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHH AASGFHVSLILGAVLTLTKKMSSGKRFSFGILLLSIYVAFTGFVPSVLRAALMGLATLLG HCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IVFQRMVKPLVSLLLAATLLLLINPLWIWNLGFQLSFLATLGLLVTLPPLTKRLNMLPSG HHHHHHHHHHHHHHHHHHHHHHHCHHHHEECCHHHHHHHHHHHHHCCCHHHHHHHHCCCH IAYLAAIYISASVWVLPLLLSVFYVVSPYAILVNIIVAPLVTVITVGGFISAMLALIYPD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AGSLSAMILHFPVKILIEIVQFFSRLPGNQVAVGAISVYQLVVLYGLIFTTWFLESKTPE CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC VDKGKKKKFSLKLWQWSLLLAIAIIIIPLWYTRTSVFQATILDSPSKPVFVIQDQGKVIL CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEECCCCEEE VNAGDENTARFKVLPFLRQQGINKIDWSIDLHSQKGLSRGWPYVFESLKIKTFYDVETDE EECCCCCCCEEEEEHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHCEEEEEEECCCCCC EKGYQTNNQPVFNALQKIKANYYTVIKNQNVDLGSTQMKLINSETPIVKFMIHGQSWLLL CCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHEEECCCCCEEEEEEECCEEEEE GNTELSQQSKLLAEKSFQPTEVLWWSGNKLNAELLNIIRPKVAIASSDSVHPDMIEFFQE CCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCEEEECCCCCCHHHHHHHHC NNIPLFWTGRDGAIQWTPITGFQSTLELDQSDSSFL CCCEEEEECCCCCEEEEECCCCHHHHCCCCCCCCCC >Mature Secondary Structure MNQAVVIVICLAYIMGLLSTILPWGIYAVVTIGLLLATIAQQIYRQNLRKLTREMTASEQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH EISSEDLLRSNKLQDLLTRRTRKNLLNSNWLWITAGAIALLASIYFQWRVPQPTASDISK HCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHEECCCCCHHHHHH IISLDGESQQQVVIVRGKVLSVPRTTRSGKAQLWLKASQVSEVVGTGGSANVHQDVTGKV HHHCCCCCCCEEEEEECEEEECCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCEE YVTIPLLQATGIYPNELVAITGSLYRPSPATNPGGFDFRAYLAREGAFAGVTGYKITELN EEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEC QENNVWGLYKIRQRIIRAQVKFLGVPEGPLVSAMVLGRKAVDFSYQLRDQFIQVGLAHIL CCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHH AASGFHVSLILGAVLTLTKKMSSGKRFSFGILLLSIYVAFTGFVPSVLRAALMGLATLLG HCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IVFQRMVKPLVSLLLAATLLLLINPLWIWNLGFQLSFLATLGLLVTLPPLTKRLNMLPSG HHHHHHHHHHHHHHHHHHHHHHHCHHHHEECCHHHHHHHHHHHHHCCCHHHHHHHHCCCH IAYLAAIYISASVWVLPLLLSVFYVVSPYAILVNIIVAPLVTVITVGGFISAMLALIYPD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AGSLSAMILHFPVKILIEIVQFFSRLPGNQVAVGAISVYQLVVLYGLIFTTWFLESKTPE CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC VDKGKKKKFSLKLWQWSLLLAIAIIIIPLWYTRTSVFQATILDSPSKPVFVIQDQGKVIL CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEECCCCEEE VNAGDENTARFKVLPFLRQQGINKIDWSIDLHSQKGLSRGWPYVFESLKIKTFYDVETDE EECCCCCCCEEEEEHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHCEEEEEEECCCCCC EKGYQTNNQPVFNALQKIKANYYTVIKNQNVDLGSTQMKLINSETPIVKFMIHGQSWLLL CCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHEEECCCCCEEEEEEECCEEEEE GNTELSQQSKLLAEKSFQPTEVLWWSGNKLNAELLNIIRPKVAIASSDSVHPDMIEFFQE CCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCEEEECCCCCCHHHHHHHHC NNIPLFWTGRDGAIQWTPITGFQSTLELDQSDSSFL CCCEEEEECCCCCEEEEECCCCHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]