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The map label for this gene is ruvC

Identifier: 113477103

GI number: 113477103

Start: 5564312

End: 5564803

Strand: Reverse

Name: ruvC

Synonym: Tery_3620

Alternate gene names: 113477103

Gene position: 5564803-5564312 (Counterclockwise)

Preceding gene: 113477104

Following gene: 113477102

Centisome position: 71.8

GC content: 33.13

Gene sequence:

>492_bases
ATGGAAAAATTAATTCTCGGATTAGATCCAGGTTTAGCGGTACTAGGATTTGGATTAATTAAGTGTATTTATAATTCAAA
AACAGAAAAAATAGATTCTACTTCTCTGGTTGATTTTGGGGTAATTAAAACTACAAAAAAACAAGAAATGGGGCAACGTC
TCGTCACAATATATGAAGATTTACATACTATCCTAAATAACTTTAAACCAGACTTGGCAGCTACAGAAAAGTTATTCTTT
TATCGTATGGGTAATACAATTTTAGTTGCCCAAGCTAGAGGAATTTTAATATTGGCATTAGCACAAAATGAAATTCCATT
AATTGAGTTTACACCCGCACAAATTAAGCAAGCAGTAACAGGTTATGGCAATGCAGATAAATATGATGTGCAACAAGCAG
TAGCAAGGGAATTAAATTTGGAGGAAATTCCTAAACCAGATGATGCTGCTGATGCTTTAGCAGTTGCTCTAACAGCAAGT
TGGTTAAATTAA

Upstream 100 bases:

>100_bases
AGGGAAAAAACTAGAAAAATGTAATATTTGATAATAGATTTATAATTATATCCTGTTCTCTCTCAACAGTAGATTTACTA
TAAGAATTAAAAGTCTAAAA

Downstream 100 bases:

>100_bases
GTCACATTTTAACCCCACGCTTTATGTTGAGTAACTTTGGCTTGAAATAGGACTTTCAAGATAGATTCTGGATGGGGCGG
ATAGTAATATATTCGTAACT

Product: Holliday junction resolvase

Products: NA

Alternate protein names: Holliday junction nuclease ruvC; Holliday junction resolvase ruvC

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MEKLILGLDPGLAVLGFGLIKCIYNSKTEKIDSTSLVDFGVIKTTKKQEMGQRLVTIYEDLHTILNNFKPDLAATEKLFF
YRMGNTILVAQARGILILALAQNEIPLIEFTPAQIKQAVTGYGNADKYDVQQAVARELNLEEIPKPDDAADALAVALTAS
WLN

Sequences:

>Translated_163_residues
MEKLILGLDPGLAVLGFGLIKCIYNSKTEKIDSTSLVDFGVIKTTKKQEMGQRLVTIYEDLHTILNNFKPDLAATEKLFF
YRMGNTILVAQARGILILALAQNEIPLIEFTPAQIKQAVTGYGNADKYDVQQAVARELNLEEIPKPDDAADALAVALTAS
WLN
>Mature_163_residues
MEKLILGLDPGLAVLGFGLIKCIYNSKTEKIDSTSLVDFGVIKTTKKQEMGQRLVTIYEDLHTILNNFKPDLAATEKLFF
YRMGNTILVAQARGILILALAQNEIPLIEFTPAQIKQAVTGYGNADKYDVQQAVARELNLEEIPKPDDAADALAVALTAS
WLN

Specific function: Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leav

COG id: COG0817

COG function: function code L; Holliday junction resolvasome, endonuclease subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ruvC family

Homologues:

Organism=Escherichia coli, GI1788170, Length=143, Percent_Identity=34.965034965035, Blast_Score=84, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVC_TRIEI (Q10YI3)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_723164.1
- ProteinModelPortal:   Q10YI3
- SMR:   Q10YI3
- STRING:   Q10YI3
- GeneID:   4244137
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_3620
- NMPDR:   fig|203124.1.peg.6146
- eggNOG:   COG0817
- HOGENOM:   HBG437552
- OMA:   RTGWGVI
- PhylomeDB:   Q10YI3
- ProtClustDB:   PRK00039
- BioCyc:   TERY203124:TERY_3620-MONOMER
- HAMAP:   MF_00034
- InterPro:   IPR012337
- InterPro:   IPR002176
- PRINTS:   PR00696
- TIGRFAMs:   TIGR00228

Pfam domain/function: PF02075 RuvC; SSF53098 RNaseH_fold

EC number: =3.1.22.4

Molecular weight: Translated: 17939; Mature: 17939

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS01321 RUVC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKLILGLDPGLAVLGFGLIKCIYNSKTEKIDSTSLVDFGVIKTTKKQEMGQRLVTIYED
CCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHH
LHTILNNFKPDLAATEKLFFYRMGNTILVAQARGILILALAQNEIPLIEFTPAQIKQAVT
HHHHHHCCCCCHHHHHHHHEEECCCEEEEEECCCEEEEEEECCCCCEEEECHHHHHHHHH
GYGNADKYDVQQAVARELNLEEIPKPDDAADALAVALTASWLN
CCCCCCHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEKLILGLDPGLAVLGFGLIKCIYNSKTEKIDSTSLVDFGVIKTTKKQEMGQRLVTIYED
CCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHH
LHTILNNFKPDLAATEKLFFYRMGNTILVAQARGILILALAQNEIPLIEFTPAQIKQAVT
HHHHHHCCCCCHHHHHHHHEEECCCEEEEEECCCEEEEEEECCCCCEEEECHHHHHHHHH
GYGNADKYDVQQAVARELNLEEIPKPDDAADALAVALTASWLN
CCCCCCHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA