Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476982
Identifier: 113476982
GI number: 113476982
Start: 5358455
End: 5358853
Strand: Reverse
Name: 113476982
Synonym: Tery_3480
Alternate gene names: NA
Gene position: 5358853-5358455 (Counterclockwise)
Preceding gene: 113476983
Following gene: 113476981
Centisome position: 69.15
GC content: 39.1
Gene sequence:
>399_bases ATGAATGCTCCAACATCTAACAGTAATTATGTACTTTGTCCAATTTGCAATCGTTCCAGTATTGCACAACCAGTAGGAAT TTTGAATGGACTATTTACCTGTCCATACTGTCATTCCCATCTAGTAATAAGTTGGAGTGGCCACTATGTCAGAGACCCGT TGGCGCTCCAACAGCTATATATTGGACAAATGCTCAGAAGACAAAGTAAACCTTTGGCCAGGTTGCGCCGTGACTTGACT CGTCAGTATCTACCAATAGCTATGGTGATAGGTAGTGCCATATTATTTGGAGGAGCGATCGCTACTCTAAGTATATTTGA TTTGAAGTTGAATATATTTGATGGAGTATTAGAGTGGGTAAAAGATAAAGACTTATTGAATAGTAAGAAGAATCCGTAG
Upstream 100 bases:
>100_bases ACAATATATAAATAATAGGCAATAGGCATTTCATATTGCAGATTAAATAACTTCAGTTGTCTAACTGGTAATAATTTTTG TTGATTTTTCAAAAACGTAT
Downstream 100 bases:
>100_bases TCATATCAAATATCCCTAATTCTAGATATATCTAATGACTTTATAATCATGACTTTAGCTATAATCATTAATTAAAGTTT TGAACCTAATTTTAAATAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 132; Mature: 132
Protein sequence:
>132_residues MNAPTSNSNYVLCPICNRSSIAQPVGILNGLFTCPYCHSHLVISWSGHYVRDPLALQQLYIGQMLRRQSKPLARLRRDLT RQYLPIAMVIGSAILFGGAIATLSIFDLKLNIFDGVLEWVKDKDLLNSKKNP
Sequences:
>Translated_132_residues MNAPTSNSNYVLCPICNRSSIAQPVGILNGLFTCPYCHSHLVISWSGHYVRDPLALQQLYIGQMLRRQSKPLARLRRDLT RQYLPIAMVIGSAILFGGAIATLSIFDLKLNIFDGVLEWVKDKDLLNSKKNP >Mature_132_residues MNAPTSNSNYVLCPICNRSSIAQPVGILNGLFTCPYCHSHLVISWSGHYVRDPLALQQLYIGQMLRRQSKPLARLRRDLT RQYLPIAMVIGSAILFGGAIATLSIFDLKLNIFDGVLEWVKDKDLLNSKKNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14786; Mature: 14786
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAPTSNSNYVLCPICNRSSIAQPVGILNGLFTCPYCHSHLVISWSGHYVRDPLALQQLY CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHH IGQMLRRQSKPLARLRRDLTRQYLPIAMVIGSAILFGGAIATLSIFDLKLNIFDGVLEWV HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDKDLLNSKKNP HHHHHHCCCCCC >Mature Secondary Structure MNAPTSNSNYVLCPICNRSSIAQPVGILNGLFTCPYCHSHLVISWSGHYVRDPLALQQLY CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHH IGQMLRRQSKPLARLRRDLTRQYLPIAMVIGSAILFGGAIATLSIFDLKLNIFDGVLEWV HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDKDLLNSKKNP HHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA