| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476543
Identifier: 113476543
GI number: 113476543
Start: 4624227
End: 4625204
Strand: Reverse
Name: 113476543
Synonym: Tery_2973
Alternate gene names: NA
Gene position: 4625204-4624227 (Counterclockwise)
Preceding gene: 113476544
Following gene: 113476542
Centisome position: 59.68
GC content: 34.36
Gene sequence:
>978_bases ATGAACAATCAAGCTAGATTATTACCATTAAACCATTTCTCATCAATACCTATAGACTGTTTAGCTGCATTAATTGGCAG TCTAATCTGTATATCTTTTTCACCAATTTTTATCCGTTTAAGCGAGTATAATCTTGGTCCAAATGCTACAATATTCAATC GTTTTTGGATTGCAGCTATTCCCTTTTGGTTACTAAATGGATTATTAACTTTAAATTACCGAAAACAAAAAAATAAAACT CAAATTGAATTAAATAAACCAGAACTAGTTAAAAAAGGAATGCTACTGATAGCAGATGGGATCCTTTTATCTATTGGTCT GATACTTTGGGCTTGGTCTTTAACCATGACAAGCATTGCTCACTCTACTATGCTCCATAGTTTAGTGCCTATATTTACTG TGTTAGGAGCATGGTTAGCTTTAAGTCAAACCTTTGACCATAAATTTCTACTTGGTATGTTTGTGGCGATATGTGGTTCT GCCTTGTTAGAAGTGAATGATATTTTCTCATTTAGAATTAGTGAACAATTACTAGGAGACTTAGCAGCTTTACTCTCAGC AGTATTTTTTGGTATACACCCACTTATAGTTCAGAAACTTCGCACTCAATTCAACCCAGTTACAATTATGACTTGGTCTT CAACAACGAGTGCCTTATTGCTCTTACCTGTAGTTCTAATTACTGAGGATCAACTTTTTCCAAGTTCATTAACTGGTTGG CTTGCAGTCATTATTCAAGCTCTTTGTAGTCAAATGATAGGTATAGGGCTGTGGGCTTATTCTCTCAAAAAATTATCTGC TGGGTTTACTAGCTTAGTTGCATTATGTGCTCCTGCTCTTAGTATGATCGAAGGTTGGATAATTTTCTCGGAAAATATTA ATCTCTGGAGTTCGGTAAGCTTCTCAATAATTTTATGGGGAATGTATTTGGCTATATCAAGTAAATCTGTTAATACAGGA GTTGAGTCTTCTAATTAA
Upstream 100 bases:
>100_bases TATTGTTTATGGAATTGCTAATTTGCAAATTTGGCCTAAAGATTTGAGTAAACAATAAAATCATACTACTACTTTTTCAA TTTCAGCAATTAGAAAAAAG
Downstream 100 bases:
>100_bases TTAAGTTTAATTATTGCATCTACCACAATTTTCTCTTAATGTATTTTTTGGCCGACAGTTCCGTGTTTAAATACATCAGT GTGTGAAAGTTGAAAAATAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 325; Mature: 325
Protein sequence:
>325_residues MNNQARLLPLNHFSSIPIDCLAALIGSLICISFSPIFIRLSEYNLGPNATIFNRFWIAAIPFWLLNGLLTLNYRKQKNKT QIELNKPELVKKGMLLIADGILLSIGLILWAWSLTMTSIAHSTMLHSLVPIFTVLGAWLALSQTFDHKFLLGMFVAICGS ALLEVNDIFSFRISEQLLGDLAALLSAVFFGIHPLIVQKLRTQFNPVTIMTWSSTTSALLLLPVVLITEDQLFPSSLTGW LAVIIQALCSQMIGIGLWAYSLKKLSAGFTSLVALCAPALSMIEGWIIFSENINLWSSVSFSIILWGMYLAISSKSVNTG VESSN
Sequences:
>Translated_325_residues MNNQARLLPLNHFSSIPIDCLAALIGSLICISFSPIFIRLSEYNLGPNATIFNRFWIAAIPFWLLNGLLTLNYRKQKNKT QIELNKPELVKKGMLLIADGILLSIGLILWAWSLTMTSIAHSTMLHSLVPIFTVLGAWLALSQTFDHKFLLGMFVAICGS ALLEVNDIFSFRISEQLLGDLAALLSAVFFGIHPLIVQKLRTQFNPVTIMTWSSTTSALLLLPVVLITEDQLFPSSLTGW LAVIIQALCSQMIGIGLWAYSLKKLSAGFTSLVALCAPALSMIEGWIIFSENINLWSSVSFSIILWGMYLAISSKSVNTG VESSN >Mature_325_residues MNNQARLLPLNHFSSIPIDCLAALIGSLICISFSPIFIRLSEYNLGPNATIFNRFWIAAIPFWLLNGLLTLNYRKQKNKT QIELNKPELVKKGMLLIADGILLSIGLILWAWSLTMTSIAHSTMLHSLVPIFTVLGAWLALSQTFDHKFLLGMFVAICGS ALLEVNDIFSFRISEQLLGDLAALLSAVFFGIHPLIVQKLRTQFNPVTIMTWSSTTSALLLLPVVLITEDQLFPSSLTGW LAVIIQALCSQMIGIGLWAYSLKKLSAGFTSLVALCAPALSMIEGWIIFSENINLWSSVSFSIILWGMYLAISSKSVNTG VESSN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35812; Mature: 35812
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNQARLLPLNHFSSIPIDCLAALIGSLICISFSPIFIRLSEYNLGPNATIFNRFWIAAI CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHH PFWLLNGLLTLNYRKQKNKTQIELNKPELVKKGMLLIADGILLSIGLILWAWSLTMTSIA HHHHHCCCEEEEECCCCCCCEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH HSTMLHSLVPIFTVLGAWLALSQTFDHKFLLGMFVAICGSALLEVNDIFSFRISEQLLGD HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAALLSAVFFGIHPLIVQKLRTQFNPVTIMTWSSTTSALLLLPVVLITEDQLFPSSLTGW HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHH LAVIIQALCSQMIGIGLWAYSLKKLSAGFTSLVALCAPALSMIEGWIIFSENINLWSSVS HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHH FSIILWGMYLAISSKSVNTGVESSN HHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MNNQARLLPLNHFSSIPIDCLAALIGSLICISFSPIFIRLSEYNLGPNATIFNRFWIAAI CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHH PFWLLNGLLTLNYRKQKNKTQIELNKPELVKKGMLLIADGILLSIGLILWAWSLTMTSIA HHHHHCCCEEEEECCCCCCCEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH HSTMLHSLVPIFTVLGAWLALSQTFDHKFLLGMFVAICGSALLEVNDIFSFRISEQLLGD HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAALLSAVFFGIHPLIVQKLRTQFNPVTIMTWSSTTSALLLLPVVLITEDQLFPSSLTGW HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHH LAVIIQALCSQMIGIGLWAYSLKKLSAGFTSLVALCAPALSMIEGWIIFSENINLWSSVS HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHH FSIILWGMYLAISSKSVNTGVESSN HHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA