| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476499
Identifier: 113476499
GI number: 113476499
Start: 4535777
End: 4537462
Strand: Reverse
Name: 113476499
Synonym: Tery_2921
Alternate gene names: NA
Gene position: 4537462-4535777 (Counterclockwise)
Preceding gene: 113476500
Following gene: 113476494
Centisome position: 58.55
GC content: 36.83
Gene sequence:
>1686_bases ATGACAAAATCAGGGTTTGATTTTAGCCACTACTATAAATATCAAGAAATAGTAAATTTTCTACATCAAATGAGGGAAAA AAATCCTCATTTAATAGAATTAAAAGTTATTGGAAAAAGCTACGGCGGACTAGATATCTTCTTAGCTACTCTTACCAATC AAAATACAGGAAAAGCTCGGGAAAAACCTGGATATTGGATTGATGGTAACATTCATGCGGTAGAAGTTACAGGTTCAGCA GTTGCCCTATATATTATTTATCATCTACTAAATAATTATAATAGCAATCCTCAAGTCACTTATCTATTGGACAACCACAC AATTTATATACTACCTCGAATTGCTGTTGATGGGGCCGAAAAATATTTAACAACTCCTTATATTGTGCGCTCAAGTATTC GTCATTATCCCTATCCTGAAGAAAAGGATGGTCTTCACTGGGAAGACATAAATGGAGATGGATTAATTTTGCAAATGCGA CTCAAAGATAACTGTGGGGCTTGGAAAATCTCATCAGAAGACCCAAGAATTATGGTGCCTCGCGAACCCGATGAATTTGG AGGTACCTACTACAGTATTTTACCAGAGGGAATGATTAAAAACTATGATGGTTACAATATTAAAGTCGCCCCTAGTAAGG GAGGAATAGATTTTAATCGTAACTATCCCCACGAATGGCAGCCAGAGGGAAAACAAAAAGGTGCTGGGGATTTTCCTTTT TCTGAACCTGAAACTCTTGCTGTAGCAGAATTTTGGCGAGAACATCCTAATATTAATGGTTTTATTAACTATCATACGTT TTCTGGAGTAATTTTACGTTCCTACTGTACTTATCCAGACGAACATTTTCCTGTAAAAGATTTGGAAATTTACAAATTGA TAGGGGAGAAAGGTACTGCAATTACCGGTTATGAATGCATTTCAATCTATCATAACTTTTTGTACCCTAACAGTGAAAAA ATTTATGGTGGAATGGTTGACTATTGTTATGATCGCTTTGGTTGGTTTGGTTTTTCTATAGAGCTTTGGGATGCACCCAC AGAAGCAGGTGTTAAGAAGAATGATTATATTAAGTGGTTACAACGCCATCCTGTTACAGACGATCTAAAAATGATGCAGT GGAATGATGAAAAATTGGGTGGCACAGGTTTTATTGACTGGGAAACATTTGAACATCCCCAACTGGGTACGGTTGAAATT GGTGGGTGGAATTGGAAAATTTGGTACAACCCACCTGTTGAATATTTACCAAAGTTGTGTAAGGAACAATGTCAGTTTGC TATTTCTCATGCTTTGATGTCACCTCGTTTAGCAGTAAGTCAGGTAGTTGTTGAGCATCAGGGTGGTGATATGTATCATC TGGTAGTACAGTTAGAAAATCAAGGGTTTTTGCCTACCTATACTAGTGAAAAAGCTTTGGAACAAAAAAGTGTGAAACCA ATAGAGGTAATATTAAATTTACCTGGTAATGTAACGTTGGTGAGTGGAAAACAAAAGCAGGAAATTGAACATTTAGAGGG GCGAGCAAGTGAAGCTTTTAATTTTTTCAGTTTTTTTACTAAACTTGGAGGTTATCGTTGTCATTTAGAGTGGGTAGTCA AAGGTGTTGCTAATAGTGAGATTAAGGTGACAGCAAAAGCGGAACGAGCAGGTGTAGTGAAAACTGTGATTACTTTGCCA GAGTAA
Upstream 100 bases:
>100_bases GGGCTAATAATTATACTCAAAGCTCATAATTTTAACTTCACACTTAGTTTAATAATGCTGAAAAATACAAACTTAATTTT TAAGGATTAAATAACTTAAT
Downstream 100 bases:
>100_bases ATTAACATAAAACCCTTGGCTGCATCTTCATCCCGTGACCGAATATAAACACCAATAATTTCATAAGTTTCTACTTCCAT GGCGAACCAAACCTACTGCT
Product: peptidase M14, carboxypeptidase A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 561; Mature: 560
Protein sequence:
>561_residues MTKSGFDFSHYYKYQEIVNFLHQMREKNPHLIELKVIGKSYGGLDIFLATLTNQNTGKAREKPGYWIDGNIHAVEVTGSA VALYIIYHLLNNYNSNPQVTYLLDNHTIYILPRIAVDGAEKYLTTPYIVRSSIRHYPYPEEKDGLHWEDINGDGLILQMR LKDNCGAWKISSEDPRIMVPREPDEFGGTYYSILPEGMIKNYDGYNIKVAPSKGGIDFNRNYPHEWQPEGKQKGAGDFPF SEPETLAVAEFWREHPNINGFINYHTFSGVILRSYCTYPDEHFPVKDLEIYKLIGEKGTAITGYECISIYHNFLYPNSEK IYGGMVDYCYDRFGWFGFSIELWDAPTEAGVKKNDYIKWLQRHPVTDDLKMMQWNDEKLGGTGFIDWETFEHPQLGTVEI GGWNWKIWYNPPVEYLPKLCKEQCQFAISHALMSPRLAVSQVVVEHQGGDMYHLVVQLENQGFLPTYTSEKALEQKSVKP IEVILNLPGNVTLVSGKQKQEIEHLEGRASEAFNFFSFFTKLGGYRCHLEWVVKGVANSEIKVTAKAERAGVVKTVITLP E
Sequences:
>Translated_561_residues MTKSGFDFSHYYKYQEIVNFLHQMREKNPHLIELKVIGKSYGGLDIFLATLTNQNTGKAREKPGYWIDGNIHAVEVTGSA VALYIIYHLLNNYNSNPQVTYLLDNHTIYILPRIAVDGAEKYLTTPYIVRSSIRHYPYPEEKDGLHWEDINGDGLILQMR LKDNCGAWKISSEDPRIMVPREPDEFGGTYYSILPEGMIKNYDGYNIKVAPSKGGIDFNRNYPHEWQPEGKQKGAGDFPF SEPETLAVAEFWREHPNINGFINYHTFSGVILRSYCTYPDEHFPVKDLEIYKLIGEKGTAITGYECISIYHNFLYPNSEK IYGGMVDYCYDRFGWFGFSIELWDAPTEAGVKKNDYIKWLQRHPVTDDLKMMQWNDEKLGGTGFIDWETFEHPQLGTVEI GGWNWKIWYNPPVEYLPKLCKEQCQFAISHALMSPRLAVSQVVVEHQGGDMYHLVVQLENQGFLPTYTSEKALEQKSVKP IEVILNLPGNVTLVSGKQKQEIEHLEGRASEAFNFFSFFTKLGGYRCHLEWVVKGVANSEIKVTAKAERAGVVKTVITLP E >Mature_560_residues TKSGFDFSHYYKYQEIVNFLHQMREKNPHLIELKVIGKSYGGLDIFLATLTNQNTGKAREKPGYWIDGNIHAVEVTGSAV ALYIIYHLLNNYNSNPQVTYLLDNHTIYILPRIAVDGAEKYLTTPYIVRSSIRHYPYPEEKDGLHWEDINGDGLILQMRL KDNCGAWKISSEDPRIMVPREPDEFGGTYYSILPEGMIKNYDGYNIKVAPSKGGIDFNRNYPHEWQPEGKQKGAGDFPFS EPETLAVAEFWREHPNINGFINYHTFSGVILRSYCTYPDEHFPVKDLEIYKLIGEKGTAITGYECISIYHNFLYPNSEKI YGGMVDYCYDRFGWFGFSIELWDAPTEAGVKKNDYIKWLQRHPVTDDLKMMQWNDEKLGGTGFIDWETFEHPQLGTVEIG GWNWKIWYNPPVEYLPKLCKEQCQFAISHALMSPRLAVSQVVVEHQGGDMYHLVVQLENQGFLPTYTSEKALEQKSVKPI EVILNLPGNVTLVSGKQKQEIEHLEGRASEAFNFFSFFTKLGGYRCHLEWVVKGVANSEIKVTAKAERAGVVKTVITLPE
Specific function: Unknown
COG id: COG2866
COG function: function code E; Predicted carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI188536067, Length=115, Percent_Identity=33.0434782608696, Blast_Score=71, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25143424, Length=322, Percent_Identity=23.6024844720497, Blast_Score=88, Evalue=1e-17, Organism=Caenorhabditis elegans, GI32563693, Length=126, Percent_Identity=30.1587301587302, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI221330951, Length=133, Percent_Identity=35.3383458646617, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI221372162, Length=108, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI221372169, Length=108, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI221372165, Length=108, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI221372158, Length=108, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64359; Mature: 64228
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKSGFDFSHYYKYQEIVNFLHQMREKNPHLIELKVIGKSYGGLDIFLATLTNQNTGKAR CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCC EKPGYWIDGNIHAVEVTGSAVALYIIYHLLNNYNSNPQVTYLLDNHTIYILPRIAVDGAE CCCCEEECCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEEEEEECCCH KYLTTPYIVRSSIRHYPYPEEKDGLHWEDINGDGLILQMRLKDNCGAWKISSEDPRIMVP HHCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCEEEECCCCCEEECC REPDEFGGTYYSILPEGMIKNYDGYNIKVAPSKGGIDFNRNYPHEWQPEGKQKGAGDFPF CCCHHHCCEEEEECCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SEPETLAVAEFWREHPNINGFINYHTFSGVILRSYCTYPDEHFPVKDLEIYKLIGEKGTA CCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCEEEEEEECCCCCE ITGYECISIYHNFLYPNSEKIYGGMVDYCYDRFGWFGFSIELWDAPTEAGVKKNDYIKWL EECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEEEEEEEECCCCCCCCCCHHHHHHH QRHPVTDDLKMMQWNDEKLGGTGFIDWETFEHPQLGTVEIGGWNWKIWYNPPVEYLPKLC HHCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCEEEECCEEEEEEECCCHHHHHHHH KEQCQFAISHALMSPRLAVSQVVVEHQGGDMYHLVVQLENQGFLPTYTSEKALEQKSVKP HHHHHHHHHHHHHCCCHHHHHHHEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHCCCE IEVILNLPGNVTLVSGKQKQEIEHLEGRASEAFNFFSFFTKLGGYRCHLEWVVKGVANSE EEEEEECCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEHHHHCCCCCE IKVTAKAERAGVVKTVITLPE EEEEEECCCCCEEEEEEECCC >Mature Secondary Structure TKSGFDFSHYYKYQEIVNFLHQMREKNPHLIELKVIGKSYGGLDIFLATLTNQNTGKAR CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCC EKPGYWIDGNIHAVEVTGSAVALYIIYHLLNNYNSNPQVTYLLDNHTIYILPRIAVDGAE CCCCEEECCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEEEEEEECCCH KYLTTPYIVRSSIRHYPYPEEKDGLHWEDINGDGLILQMRLKDNCGAWKISSEDPRIMVP HHCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCEEEECCCCCEEECC REPDEFGGTYYSILPEGMIKNYDGYNIKVAPSKGGIDFNRNYPHEWQPEGKQKGAGDFPF CCCHHHCCEEEEECCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SEPETLAVAEFWREHPNINGFINYHTFSGVILRSYCTYPDEHFPVKDLEIYKLIGEKGTA CCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCEEEEEEECCCCCE ITGYECISIYHNFLYPNSEKIYGGMVDYCYDRFGWFGFSIELWDAPTEAGVKKNDYIKWL EECHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEEEEEEEECCCCCCCCCCHHHHHHH QRHPVTDDLKMMQWNDEKLGGTGFIDWETFEHPQLGTVEIGGWNWKIWYNPPVEYLPKLC HHCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCEEEECCEEEEEEECCCHHHHHHHH KEQCQFAISHALMSPRLAVSQVVVEHQGGDMYHLVVQLENQGFLPTYTSEKALEQKSVKP HHHHHHHHHHHHHCCCHHHHHHHEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHCCCE IEVILNLPGNVTLVSGKQKQEIEHLEGRASEAFNFFSFFTKLGGYRCHLEWVVKGVANSE EEEEEECCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEHHHHCCCCCE IKVTAKAERAGVVKTVITLPE EEEEEECCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA