| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is crp [C]
Identifier: 113476485
GI number: 113476485
Start: 4516986
End: 4517459
Strand: Reverse
Name: crp [C]
Synonym: Tery_2905
Alternate gene names: 113476485
Gene position: 4517459-4516986 (Counterclockwise)
Preceding gene: 113476494
Following gene: 113476484
Centisome position: 58.29
GC content: 34.18
Gene sequence:
>474_bases ATGCTTACAAGTGTCGAGCGTCTTTTGTTTATTAGAGCTGTACCAATTTTTAGAGAATTAAGAGATGATTTTCTAGTACG TTTAGCTTCTGTGATGAACGAGCTATCTTTCCCTACTAACCATACTATTTTTACTGAAGGGAAAGAAGGAAGATCTCTTT ATATCGTAGTATCTGGTAAAGTTAAAGTTCATTTGGAAGACCGTGAGTTAGCACACTTAGAACAAGGAGCTTGTTTTGGT GAAATGTCTTTGTTTGATGCTGAACCTCGCTCTGCTTCTGTTACTACTTTAGAAAATTGTGAATGTTTAGTTTTAACTCA AATACAACTTTATGACGCAATTGATGAAACACCAGAAATTGCAATTAATATTATTCGTCTATTGTCTCGTCGTATTCGTG AATTTAACCAAAGGCTTAATGCTAAGGAAAGTAGTACTTCTTCTAATAGTAATAGAATACCTGAAATGCGTTAG
Upstream 100 bases:
>100_bases CTATCAAATTTCATCTAAAATATTATTAACCATAAAAACTGGCTTCTACAACAATAATTATTAAATTTGTTTCTTTGTCA AGAATGAGGATGTAAATATT
Downstream 100 bases:
>100_bases AAATATGGAATAATATTGAGAAAATTAGTTGAGCTACAGATAAAGCTAACATGAATGAATTTATGAATAAATTGTAATAA GTAACAGAATATTAAATTGC
Product: cyclic nucleotide-binding protein
Products: NA
Alternate protein names: Cyclic AMP Receptor Protein; Transcriptional Regulator; Crp/Fnr Family Transcriptional Regulator
Number of amino acids: Translated: 157; Mature: 157
Protein sequence:
>157_residues MLTSVERLLFIRAVPIFRELRDDFLVRLASVMNELSFPTNHTIFTEGKEGRSLYIVVSGKVKVHLEDRELAHLEQGACFG EMSLFDAEPRSASVTTLENCECLVLTQIQLYDAIDETPEIAINIIRLLSRRIREFNQRLNAKESSTSSNSNRIPEMR
Sequences:
>Translated_157_residues MLTSVERLLFIRAVPIFRELRDDFLVRLASVMNELSFPTNHTIFTEGKEGRSLYIVVSGKVKVHLEDRELAHLEQGACFG EMSLFDAEPRSASVTTLENCECLVLTQIQLYDAIDETPEIAINIIRLLSRRIREFNQRLNAKESSTSSNSNRIPEMR >Mature_157_residues MLTSVERLLFIRAVPIFRELRDDFLVRLASVMNELSFPTNHTIFTEGKEGRSLYIVVSGKVKVHLEDRELAHLEQGACFG EMSLFDAEPRSASVTTLENCECLVLTQIQLYDAIDETPEIAINIIRLLSRRIREFNQRLNAKESSTSSNSNRIPEMR
Specific function: This Protein Complexes With Cyclic AMP And Binds To Specific DNA Sites Near The Promoter To Regulate The Transcription Of Several Catabolite-Sensitive Operons. The Protein Induces A Severe Bend In The DNA. Acts As A Negative Regulator Of Its Own Synthesi
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17973; Mature: 17973
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: PS00889 CNMP_BINDING_2 ; PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTSVERLLFIRAVPIFRELRDDFLVRLASVMNELSFPTNHTIFTEGKEGRSLYIVVSGK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECE VKVHLEDRELAHLEQGACFGEMSLFDAEPRSASVTTLENCECLVLTQIQLYDAIDETPEI EEEEECCCHHHHHHCCCCCCCCCEECCCCCCCCCEEECCCCEEEEEHHHHHHHHCCCHHH AINIIRLLSRRIREFNQRLNAKESSTSSNSNRIPEMR HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLTSVERLLFIRAVPIFRELRDDFLVRLASVMNELSFPTNHTIFTEGKEGRSLYIVVSGK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECE VKVHLEDRELAHLEQGACFGEMSLFDAEPRSASVTTLENCECLVLTQIQLYDAIDETPEI EEEEECCCHHHHHHCCCCCCCCCEECCCCCCCCCEEECCCCEEEEEHHHHHHHHCCCHHH AINIIRLLSRRIREFNQRLNAKESSTSSNSNRIPEMR HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA