| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476446
Identifier: 113476446
GI number: 113476446
Start: 4460035
End: 4462080
Strand: Reverse
Name: 113476446
Synonym: Tery_2861
Alternate gene names: NA
Gene position: 4462080-4460035 (Counterclockwise)
Preceding gene: 113476447
Following gene: 113476445
Centisome position: 57.57
GC content: 32.11
Gene sequence:
>2046_bases ATGTCTAATAATAAAAAGGTAGAAACAGTAGCTATTAATTTTCATCAATTAGCAGAATCTAGTCTAGCCCAAGGAAAATT GGATGAAGCTTATGCAGCTTGTTTAAAAGCATTAAATAGCCAACCAGAATTTGCACCAGCTTACAAAACTATAGGCAATA TTTTACAGGTCAAAGGAGATATAGAGGCAGCCAAAAATTATTATTTTAAAGCCATAACAATATTTCCTGATTTTGCTGAA GCCCATGCTAATATTGGTAGTATGTACGCTAAACAAAGGGACTGGGAAAAAGCATTTTTTTATTACCAAAAAGCTATCCA TATTAAGCCTAACTTAGCGATAGTTTATCGAAATTTAGCGAAAGTCTGCGAGTGTACTGAAAAAGAAGAATTAGCCACAG AATATACTTATAAAGCACTTATCCTAGAACCGGAATCAGCTACAGCTATAGAGCATTTGAATATAGGAAAAAAATTATTA GAATTAAACAAAATAGAGGCAGCAATTAAATGTTACCGTAATGCTGTTAAAATTAATCCTAATTTGTCAGCAGGATATCA AAATTTAGGAGAATTGTTGGTAAAAAATGGGGAATTAGAGTCAGCATTAATAGCTTTACGCGAAGGAATTAAGATAGATG CTAAAAACCCTAGATGTTACTACTTACTCGGGGAAGTTTGGCAAAAACAGGGACAATATAAGTTAGCAATTTCAGATTAT AGTCGTGCTATAGAATTAAAACCAGAAAATCATTTATTCCACAAAAAATTAGGAGATGTTTGGGAAAAAATGGGTAAGCT AGATGTGGCAATATCCTGTTACGAAAAAGCTATAGAAATAAATCCAAATTTCTTTTGGAGTTACCATAGTTTAGGTAATG TCTATACTAAACAACAAAAATGGGATAAAGCGATCGCTGCTTACGACAAAGCAACTATTATTAACCCAAATTTCTCTAAT ACATACTATAATTTAGCTGATGCTTTTTTACACAATTCTCAAAAAGAGGAAGCTATTATTACTTACTTAGAAGCTATTAG ACTTAGACCAGAACATTCTTGGTATTCTCATCATTCAGTATTATGGAAACACTTACTAAAAAGTCGGCTTGAGGAAGTAT TAAATTTATATCAAGATGCCACAAAAAAAGAGCCAAATAGTATTTTGTGTCATCTTAACCTAGGAGAAATTTTTACAGAA AAAGGAAATATAAAAGAAGCAATTAACAGCTATCAAACAGCTTGTTACAACAAAACAAAAAAATCAAATCCTGCCTTTGT CGACAAGTATTGGAACTTTGATAATGTAGCGCGTCCTAATTTCATTATTATTGGTTCTCAAAAAAGTGGTACGACTTCTT TAGCAAGTTATATTAGTCAACACCCCCAAGTATTACCAGCTATTAAGAAAGAAACCCATTTTTGGTCACGGGAATTTAAT CAAGGAATAGATTGGTATCTGGCTCATTTTCCTCCCATTCCTAAGTCGCAAAATTTGATTACTGGGGAAGCTACTCCTAA TTATTTAGTCACTGATAAAATTCCAGAAAGAATCTATAGTTTACTGCCTAATATTAAACTATTGGTGATTTTAAGAAATC CAGTAGATAGAGCTTTTTCTCAATATCATCATTGGCAGAGATTAAACTGGGAAGACCGCTCTTTTGAAGTTGCAATTAAT CAGGAATTAGAAATACTGAAAACTACTCCTAAACAACCCCAAGGAGATAGAAAATATTGGCGACTATCAGGAAATTATAT AGGGAGAGGTGTTTATATAGAATTTATACAGAAATGGATGGGATTATTTCCTAAGAAACAATTTTTAATTTTGAGAGGAG AAGACCTTTATCAAACGCCCGATAATACCATGAAGCAAGTATTTGATTTTTTAGGTTTGCCAGAACATAAACTGGCAAAA TATAAAAAGTTAAATTCTGGTTCTTATACACCAATTTCTGATTTGCTGCGTCAAAGATTATCTAAATATTTTCAACCTCA TAATCAGAGATTAGAAGAGTATTTGGGTATAAAGTTTAATTGGTAA
Upstream 100 bases:
>100_bases AATTTATAAAATTTCTGGTTAAATACGGTAAATAATGGAATAGTTATAATCAGTCAAAAAAACTTAAAAACAAGCGTTTC AATAATAAAGTGATTAAAAT
Downstream 100 bases:
>100_bases TTATTTAAGGCTTGTATATTTAGAGAATAATTGGTAATTGCTTATTAAATATTAATTATTAACTATATTATCTTAGAAGT TAGGGAAAATATGGCAGATA
Product: sulfotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 681; Mature: 680
Protein sequence:
>681_residues MSNNKKVETVAINFHQLAESSLAQGKLDEAYAACLKALNSQPEFAPAYKTIGNILQVKGDIEAAKNYYFKAITIFPDFAE AHANIGSMYAKQRDWEKAFFYYQKAIHIKPNLAIVYRNLAKVCECTEKEELATEYTYKALILEPESATAIEHLNIGKKLL ELNKIEAAIKCYRNAVKINPNLSAGYQNLGELLVKNGELESALIALREGIKIDAKNPRCYYLLGEVWQKQGQYKLAISDY SRAIELKPENHLFHKKLGDVWEKMGKLDVAISCYEKAIEINPNFFWSYHSLGNVYTKQQKWDKAIAAYDKATIINPNFSN TYYNLADAFLHNSQKEEAIITYLEAIRLRPEHSWYSHHSVLWKHLLKSRLEEVLNLYQDATKKEPNSILCHLNLGEIFTE KGNIKEAINSYQTACYNKTKKSNPAFVDKYWNFDNVARPNFIIIGSQKSGTTSLASYISQHPQVLPAIKKETHFWSREFN QGIDWYLAHFPPIPKSQNLITGEATPNYLVTDKIPERIYSLLPNIKLLVILRNPVDRAFSQYHHWQRLNWEDRSFEVAIN QELEILKTTPKQPQGDRKYWRLSGNYIGRGVYIEFIQKWMGLFPKKQFLILRGEDLYQTPDNTMKQVFDFLGLPEHKLAK YKKLNSGSYTPISDLLRQRLSKYFQPHNQRLEEYLGIKFNW
Sequences:
>Translated_681_residues MSNNKKVETVAINFHQLAESSLAQGKLDEAYAACLKALNSQPEFAPAYKTIGNILQVKGDIEAAKNYYFKAITIFPDFAE AHANIGSMYAKQRDWEKAFFYYQKAIHIKPNLAIVYRNLAKVCECTEKEELATEYTYKALILEPESATAIEHLNIGKKLL ELNKIEAAIKCYRNAVKINPNLSAGYQNLGELLVKNGELESALIALREGIKIDAKNPRCYYLLGEVWQKQGQYKLAISDY SRAIELKPENHLFHKKLGDVWEKMGKLDVAISCYEKAIEINPNFFWSYHSLGNVYTKQQKWDKAIAAYDKATIINPNFSN TYYNLADAFLHNSQKEEAIITYLEAIRLRPEHSWYSHHSVLWKHLLKSRLEEVLNLYQDATKKEPNSILCHLNLGEIFTE KGNIKEAINSYQTACYNKTKKSNPAFVDKYWNFDNVARPNFIIIGSQKSGTTSLASYISQHPQVLPAIKKETHFWSREFN QGIDWYLAHFPPIPKSQNLITGEATPNYLVTDKIPERIYSLLPNIKLLVILRNPVDRAFSQYHHWQRLNWEDRSFEVAIN QELEILKTTPKQPQGDRKYWRLSGNYIGRGVYIEFIQKWMGLFPKKQFLILRGEDLYQTPDNTMKQVFDFLGLPEHKLAK YKKLNSGSYTPISDLLRQRLSKYFQPHNQRLEEYLGIKFNW >Mature_680_residues SNNKKVETVAINFHQLAESSLAQGKLDEAYAACLKALNSQPEFAPAYKTIGNILQVKGDIEAAKNYYFKAITIFPDFAEA HANIGSMYAKQRDWEKAFFYYQKAIHIKPNLAIVYRNLAKVCECTEKEELATEYTYKALILEPESATAIEHLNIGKKLLE LNKIEAAIKCYRNAVKINPNLSAGYQNLGELLVKNGELESALIALREGIKIDAKNPRCYYLLGEVWQKQGQYKLAISDYS RAIELKPENHLFHKKLGDVWEKMGKLDVAISCYEKAIEINPNFFWSYHSLGNVYTKQQKWDKAIAAYDKATIINPNFSNT YYNLADAFLHNSQKEEAIITYLEAIRLRPEHSWYSHHSVLWKHLLKSRLEEVLNLYQDATKKEPNSILCHLNLGEIFTEK GNIKEAINSYQTACYNKTKKSNPAFVDKYWNFDNVARPNFIIIGSQKSGTTSLASYISQHPQVLPAIKKETHFWSREFNQ GIDWYLAHFPPIPKSQNLITGEATPNYLVTDKIPERIYSLLPNIKLLVILRNPVDRAFSQYHHWQRLNWEDRSFEVAINQ ELEILKTTPKQPQGDRKYWRLSGNYIGRGVYIEFIQKWMGLFPKKQFLILRGEDLYQTPDNTMKQVFDFLGLPEHKLAKY KKLNSGSYTPISDLLRQRLSKYFQPHNQRLEEYLGIKFNW
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 9 TPR repeats [H]
Homologues:
Organism=Homo sapiens, GI32307148, Length=409, Percent_Identity=28.8508557457213, Blast_Score=159, Evalue=9e-39, Organism=Homo sapiens, GI32307150, Length=409, Percent_Identity=28.8508557457213, Blast_Score=159, Evalue=1e-38, Organism=Homo sapiens, GI104876423, Length=269, Percent_Identity=31.5985130111524, Blast_Score=117, Evalue=3e-26, Organism=Homo sapiens, GI4758766, Length=266, Percent_Identity=30.0751879699248, Blast_Score=115, Evalue=2e-25, Organism=Homo sapiens, GI116089312, Length=268, Percent_Identity=29.8507462686567, Blast_Score=114, Evalue=3e-25, Organism=Homo sapiens, GI5174463, Length=269, Percent_Identity=30.1115241635688, Blast_Score=113, Evalue=8e-25, Organism=Homo sapiens, GI5174467, Length=269, Percent_Identity=29.368029739777, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI5174465, Length=269, Percent_Identity=29.368029739777, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI4505353, Length=202, Percent_Identity=31.6831683168317, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI45267824, Length=268, Percent_Identity=29.4776119402985, Blast_Score=105, Evalue=2e-22, Organism=Homo sapiens, GI4826764, Length=268, Percent_Identity=29.8507462686567, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI12007650, Length=266, Percent_Identity=28.1954887218045, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI301336134, Length=396, Percent_Identity=24.7474747474747, Blast_Score=97, Evalue=7e-20, Organism=Homo sapiens, GI83415184, Length=396, Percent_Identity=24.7474747474747, Blast_Score=96, Evalue=9e-20, Organism=Homo sapiens, GI4505351, Length=201, Percent_Identity=29.8507462686567, Blast_Score=93, Evalue=1e-18, Organism=Homo sapiens, GI118766330, Length=256, Percent_Identity=26.953125, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI118766328, Length=256, Percent_Identity=26.953125, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI167466177, Length=250, Percent_Identity=25.2, Blast_Score=80, Evalue=7e-15, Organism=Homo sapiens, GI167466175, Length=250, Percent_Identity=25.2, Blast_Score=80, Evalue=7e-15, Organism=Homo sapiens, GI224809432, Length=309, Percent_Identity=23.6245954692557, Blast_Score=76, Evalue=1e-13, Organism=Homo sapiens, GI22749211, Length=342, Percent_Identity=23.3918128654971, Blast_Score=68, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115532690, Length=335, Percent_Identity=29.8507462686567, Blast_Score=150, Evalue=3e-36, Organism=Caenorhabditis elegans, GI115532692, Length=335, Percent_Identity=29.8507462686567, Blast_Score=150, Evalue=3e-36, Organism=Caenorhabditis elegans, GI17533853, Length=197, Percent_Identity=29.9492385786802, Blast_Score=98, Evalue=1e-20, Organism=Caenorhabditis elegans, GI71991175, Length=276, Percent_Identity=28.6231884057971, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71986098, Length=265, Percent_Identity=26.7924528301887, Blast_Score=95, Evalue=1e-19, Organism=Caenorhabditis elegans, GI25147174, Length=246, Percent_Identity=23.9837398373984, Blast_Score=80, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6319387, Length=194, Percent_Identity=26.2886597938144, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI17647755, Length=409, Percent_Identity=29.5843520782396, Blast_Score=162, Evalue=9e-40, Organism=Drosophila melanogaster, GI24585827, Length=409, Percent_Identity=29.5843520782396, Blast_Score=162, Evalue=9e-40, Organism=Drosophila melanogaster, GI24585829, Length=409, Percent_Identity=29.5843520782396, Blast_Score=162, Evalue=9e-40, Organism=Drosophila melanogaster, GI24643211, Length=272, Percent_Identity=30.5147058823529, Blast_Score=125, Evalue=1e-28, Organism=Drosophila melanogaster, GI161076610, Length=340, Percent_Identity=24.4117647058824, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI19920486, Length=340, Percent_Identity=24.4117647058824, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI281364285, Length=356, Percent_Identity=24.7191011235955, Blast_Score=91, Evalue=4e-18, Organism=Drosophila melanogaster, GI24581187, Length=356, Percent_Identity=24.7191011235955, Blast_Score=90, Evalue=4e-18, Organism=Drosophila melanogaster, GI281365711, Length=210, Percent_Identity=27.1428571428571, Blast_Score=89, Evalue=7e-18, Organism=Drosophila melanogaster, GI17736971, Length=210, Percent_Identity=27.1428571428571, Blast_Score=89, Evalue=7e-18, Organism=Drosophila melanogaster, GI24647123, Length=246, Percent_Identity=26.0162601626016, Blast_Score=80, Evalue=5e-15, Organism=Drosophila melanogaster, GI28573557, Length=122, Percent_Identity=36.8852459016393, Blast_Score=77, Evalue=5e-14, Organism=Drosophila melanogaster, GI24659892, Length=261, Percent_Identity=21.8390804597701, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI24656717, Length=365, Percent_Identity=21.9178082191781, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI18110006, Length=365, Percent_Identity=21.9178082191781, Blast_Score=68, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR013105 - InterPro: IPR019734 [H]
Pfam domain/function: PF00515 TPR_1; PF07719 TPR_2 [H]
EC number: NA
Molecular weight: Translated: 78991; Mature: 78860
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNNKKVETVAINFHQLAESSLAQGKLDEAYAACLKALNSQPEFAPAYKTIGNILQVKGD CCCCCEEEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCC IEAAKNYYFKAITIFPDFAEAHANIGSMYAKQRDWEKAFFYYQKAIHIKPNLAIVYRNLA HHHHCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHH KVCECTEKEELATEYTYKALILEPESATAIEHLNIGKKLLELNKIEAAIKCYRNAVKINP HHHCCCCHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC NLSAGYQNLGELLVKNGELESALIALREGIKIDAKNPRCYYLLGEVWQKQGQYKLAISDY CCCCCHHHHHHHHHCCCCHHHHHHHHHCCCEEECCCCEEEEEEHHHHHHCCCEEEEEECC SRAIELKPENHLFHKKLGDVWEKMGKLDVAISCYEKAIEINPNFFWSYHSLGNVYTKQQK CCEEEECCCCCHHHHHHHHHHHHHCCHHEEHHHHHHHEECCCCEEEEHHHHCCHHHHHHH WDKAIAAYDKATIINPNFSNTYYNLADAFLHNSQKEEAIITYLEAIRLRPEHSWYSHHSV HHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH LWKHLLKSRLEEVLNLYQDATKKEPNSILCHLNLGEIFTEKGNIKEAINSYQTACYNKTK HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCC KSNPAFVDKYWNFDNVARPNFIIIGSQKSGTTSLASYISQHPQVLPAIKKETHFWSREFN CCCCCEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC QGIDWYLAHFPPIPKSQNLITGEATPNYLVTDKIPERIYSLLPNIKLLVILRNPVDRAFS CCCCEEEECCCCCCCCCCEEECCCCCCEEECCHHHHHHHHHCCCCEEEEEECCCHHHHHH QYHHWQRLNWEDRSFEVAINQELEILKTTPKQPQGDRKYWRLSGNYIGRGVYIEFIQKWM HHHHHHCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHH GLFPKKQFLILRGEDLYQTPDNTMKQVFDFLGLPEHKLAKYKKLNSGSYTPISDLLRQRL CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHH SKYFQPHNQRLEEYLGIKFNW HHHHCCHHHHHHHHCCCEECC >Mature Secondary Structure SNNKKVETVAINFHQLAESSLAQGKLDEAYAACLKALNSQPEFAPAYKTIGNILQVKGD CCCCEEEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCC IEAAKNYYFKAITIFPDFAEAHANIGSMYAKQRDWEKAFFYYQKAIHIKPNLAIVYRNLA HHHHCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHH KVCECTEKEELATEYTYKALILEPESATAIEHLNIGKKLLELNKIEAAIKCYRNAVKINP HHHCCCCHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC NLSAGYQNLGELLVKNGELESALIALREGIKIDAKNPRCYYLLGEVWQKQGQYKLAISDY CCCCCHHHHHHHHHCCCCHHHHHHHHHCCCEEECCCCEEEEEEHHHHHHCCCEEEEEECC SRAIELKPENHLFHKKLGDVWEKMGKLDVAISCYEKAIEINPNFFWSYHSLGNVYTKQQK CCEEEECCCCCHHHHHHHHHHHHHCCHHEEHHHHHHHEECCCCEEEEHHHHCCHHHHHHH WDKAIAAYDKATIINPNFSNTYYNLADAFLHNSQKEEAIITYLEAIRLRPEHSWYSHHSV HHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH LWKHLLKSRLEEVLNLYQDATKKEPNSILCHLNLGEIFTEKGNIKEAINSYQTACYNKTK HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCC KSNPAFVDKYWNFDNVARPNFIIIGSQKSGTTSLASYISQHPQVLPAIKKETHFWSREFN CCCCCEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC QGIDWYLAHFPPIPKSQNLITGEATPNYLVTDKIPERIYSLLPNIKLLVILRNPVDRAFS CCCCEEEECCCCCCCCCCEEECCCCCCEEECCHHHHHHHHHCCCCEEEEEECCCHHHHHH QYHHWQRLNWEDRSFEVAINQELEILKTTPKQPQGDRKYWRLSGNYIGRGVYIEFIQKWM HHHHHHCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHH GLFPKKQFLILRGEDLYQTPDNTMKQVFDFLGLPEHKLAKYKKLNSGSYTPISDLLRQRL CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHH SKYFQPHNQRLEEYLGIKFNW HHHHCCHHHHHHHHCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2105307 [H]