| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is yajQ [C]
Identifier: 113476339
GI number: 113476339
Start: 4249660
End: 4250151
Strand: Reverse
Name: yajQ [C]
Synonym: Tery_2743
Alternate gene names: 113476339
Gene position: 4250151-4249660 (Counterclockwise)
Preceding gene: 113476340
Following gene: 113476336
Centisome position: 54.84
GC content: 32.11
Gene sequence:
>492_bases ATGGCATCTACATCATCATTTGATATAGTCAGCGATTTTGATAGGCAAGAATTAGTTAATGCTATAGACCAAGCAGAGCG AGAAATTAAAGCTCGCTACGACTTGAAAGATTCTAATACATCATTAGAATTAGGCGAAGATACAATTACGATTAATACTA GTAGTCAATTTAGTTTAGATGCGGTTCATACTGTGTTACAAACTAAAGCAGCTAAACGGAATTTATCTTTAAAAATATTT GATTTTGGTAAAGTCGAATCTGCTAGTGGCAATAGAGTTAGGCAAGAAGTTAAATTACAAAAAGGCATTAGCCAAGAAAA TGCTAAAAAAATTACTAAGTTGATTAAGGATGAATTTAAAAAAGTTCAATCATCTATTCAAGGTGATGCCGTTAGAGTTT CTGCTAAGTCTAAAGATGAATTACAAGCAGTAATGCAAAGATTAAAAGCAGAAGATTTTCCCATGCCATTGCAATTTACT AACTATCGTTGA
Upstream 100 bases:
>100_bases CTGGTACAGCTATTTTGTTTATTCTCAGTTTAATTAGTGCCAATAATTTTTAGTAAACCTTGTTTTATTAGGTAAAATCA AAATAATAGATGAAAAAATT
Downstream 100 bases:
>100_bases GTAGAAAAGAAGGAGTAGGTTGCAGGTAGGGACGTTTTATGGAATGTCCCTACAGGGTAACGGAAAAAATTTGATGATTT ATGAGCGATAATTTGTTTTA
Product: putative nucleotide-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MASTSSFDIVSDFDRQELVNAIDQAEREIKARYDLKDSNTSLELGEDTITINTSSQFSLDAVHTVLQTKAAKRNLSLKIF DFGKVESASGNRVRQEVKLQKGISQENAKKITKLIKDEFKKVQSSIQGDAVRVSAKSKDELQAVMQRLKAEDFPMPLQFT NYR
Sequences:
>Translated_163_residues MASTSSFDIVSDFDRQELVNAIDQAEREIKARYDLKDSNTSLELGEDTITINTSSQFSLDAVHTVLQTKAAKRNLSLKIF DFGKVESASGNRVRQEVKLQKGISQENAKKITKLIKDEFKKVQSSIQGDAVRVSAKSKDELQAVMQRLKAEDFPMPLQFT NYR >Mature_162_residues ASTSSFDIVSDFDRQELVNAIDQAEREIKARYDLKDSNTSLELGEDTITINTSSQFSLDAVHTVLQTKAAKRNLSLKIFD FGKVESASGNRVRQEVKLQKGISQENAKKITKLIKDEFKKVQSSIQGDAVRVSAKSKDELQAVMQRLKAEDFPMPLQFTN YR
Specific function: Unknown
COG id: COG1666
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0234 family
Homologues:
Organism=Escherichia coli, GI87081737, Length=160, Percent_Identity=41.25, Blast_Score=117, Evalue=3e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2743_TRIEI (Q110Z7)
Other databases:
- EMBL: CP000393 - RefSeq: YP_722400.1 - ProteinModelPortal: Q110Z7 - SMR: Q110Z7 - STRING: Q110Z7 - GeneID: 4244776 - GenomeReviews: CP000393_GR - KEGG: ter:Tery_2743 - NMPDR: fig|203124.1.peg.3205 - eggNOG: COG1666 - HOGENOM: HBG290634 - OMA: LQFTNYR - PhylomeDB: Q110Z7 - ProtClustDB: PRK05412 - BioCyc: TERY203124:TERY_2743-MONOMER - HAMAP: MF_00632 - InterPro: IPR007551
Pfam domain/function: PF04461 DUF520
EC number: NA
Molecular weight: Translated: 18377; Mature: 18246
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTSSFDIVSDFDRQELVNAIDQAEREIKARYDLKDSNTSLELGEDTITINTSSQFSLD CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEECCCCCHHH AVHTVLQTKAAKRNLSLKIFDFGKVESASGNRVRQEVKLQKGISQENAKKITKLIKDEFK HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH KVQSSIQGDAVRVSAKSKDELQAVMQRLKAEDFPMPLQFTNYR HHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCEECCCC >Mature Secondary Structure ASTSSFDIVSDFDRQELVNAIDQAEREIKARYDLKDSNTSLELGEDTITINTSSQFSLD CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEECCCCCHHH AVHTVLQTKAAKRNLSLKIFDFGKVESASGNRVRQEVKLQKGISQENAKKITKLIKDEFK HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH KVQSSIQGDAVRVSAKSKDELQAVMQRLKAEDFPMPLQFTNYR HHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA