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The map label for this gene is 113476166

Identifier: 113476166

GI number: 113476166

Start: 3936845

End: 3938164

Strand: Reverse

Name: 113476166

Synonym: Tery_2553

Alternate gene names: NA

Gene position: 3938164-3936845 (Counterclockwise)

Preceding gene: 113476169

Following gene: 113476165

Centisome position: 50.81

GC content: 40.38

Gene sequence:

>1320_bases
ATGTTAAACAGATACAATAGAACTGCAAATATTGACCGGCTATTTTGGCAAGAGTGGCAAAAGCATCAAGACTATCTCTA
CCATTGCTGTGTCAAATGGATGGGAGGTAATTCTATAAATGCTGAGGATGCTCTGAGTATGGCTATGTTGAAGGCTAGGG
AAAAAGTACAAAAGTGTCACAAAACAATTGATAACTTCAAAGCTTGGTTGGCAAAACTCACCTATAACCTTTGTATGGAT
CTACTGAAGCAGTCTGCTCGCTATCATCAAAAGGTTGAGGATCTAGACTTGGTTCTATCTCGCGCTGATGGGAGGACTCA
AAGAGGAGATCCATTTTTTGCTGTTGCCTACGGAGAGTTAGAAGATTTTTGTCGCTTGGCTATTGACAATTTGCCAAAGA
GACTACGGGAAACTTTTGCTCTCTTTTTTAAAGAATACTCTTATAAGGAAATAGCTACAGAGTTAAGTATTTCTGAGCCT
AATGTCCGTAAGCGTATTTCCCAGGGGCGGGCTATTTTGCGAGAAAGGTATGAGGAATACCAGAAACAAAAAGAAATAGT
TATTTTTGAGGAGCACAAAGTAGAAAATTCTCCAGCTCAAGAGTTGGAAACAGAAATTATTGCTACTGAGATGCCCCAAG
AGGCTGTTTTATCTGAAGAGAAAAGTGAGCCTATTTTAGTAGAGGCAACGGCTGAGAAGGAGTTAGGGAAAATAGAGACT
GTTGGCTATAGGAAACAAGAGCTTGTTGCTCCATCAGTGTTAGTGAAATCACTTAGGGACGCTAAGAAAAAGCACTTAGT
AGAGGCAACGGCTGAGGAGGAGTTAGGGAAAATAGAGACTGTTGGCTATAGGAAACAAGAGCTTGTTGCTCCATCAGTGT
TAGTGAAATCACTTAGGGACGCTAAGAAAAAGCACTTAGTAGAGGCAACGGCTGAGGAGGAGTTAGGGAAAATAGAGACT
GTTGGCTATAGGAAACAAGAGCTTGTTGCTCCATCAGTGTTAGTGAAATCATTTAAGTATGCTAATAAAAGGTACAAAGA
TAAGACACAACACAAATGTGGTCTACTGAGTACATGCACAAATATAGTACCGGTATTGCTGAGGGGCAGGATGAATATAA
GTATAGTCGGCTTCCTGCTAGCCCAACAATATAAGGAACCGGCCAGGGGGTTAATCCACAAAGGTCTAGAAGACATAACA
CATTTATACAACTTTGGCAACAGAAAAATAAAAGCTTTAGACAAACAGTTTAATTGGTTAGCAGCGGATAATTTGCTAAG
GCTTTCAGCAGAGAAACTGAGGTACAAATTCTGCTGTTAG

Upstream 100 bases:

>100_bases
ATATAGATAAAGTTAATTATATATATATATTAAAAAATGTAGATAAAATTAATTATATATAGTATATAGATAAAATTAAT
TATATATATATTAAAAAAAA

Downstream 100 bases:

>100_bases
TGGGGTTTTTTTGAAGCTAAAACTATTGTTTTTGAGTCAGTTTTAAGTTTATAGTTGCGCGATCGCTTTTTTGGGTCAAA
AGCTGGCCTATAGGATACCT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MLNRYNRTANIDRLFWQEWQKHQDYLYHCCVKWMGGNSINAEDALSMAMLKAREKVQKCHKTIDNFKAWLAKLTYNLCMD
LLKQSARYHQKVEDLDLVLSRADGRTQRGDPFFAVAYGELEDFCRLAIDNLPKRLRETFALFFKEYSYKEIATELSISEP
NVRKRISQGRAILRERYEEYQKQKEIVIFEEHKVENSPAQELETEIIATEMPQEAVLSEEKSEPILVEATAEKELGKIET
VGYRKQELVAPSVLVKSLRDAKKKHLVEATAEEELGKIETVGYRKQELVAPSVLVKSLRDAKKKHLVEATAEEELGKIET
VGYRKQELVAPSVLVKSFKYANKRYKDKTQHKCGLLSTCTNIVPVLLRGRMNISIVGFLLAQQYKEPARGLIHKGLEDIT
HLYNFGNRKIKALDKQFNWLAADNLLRLSAEKLRYKFCC

Sequences:

>Translated_439_residues
MLNRYNRTANIDRLFWQEWQKHQDYLYHCCVKWMGGNSINAEDALSMAMLKAREKVQKCHKTIDNFKAWLAKLTYNLCMD
LLKQSARYHQKVEDLDLVLSRADGRTQRGDPFFAVAYGELEDFCRLAIDNLPKRLRETFALFFKEYSYKEIATELSISEP
NVRKRISQGRAILRERYEEYQKQKEIVIFEEHKVENSPAQELETEIIATEMPQEAVLSEEKSEPILVEATAEKELGKIET
VGYRKQELVAPSVLVKSLRDAKKKHLVEATAEEELGKIETVGYRKQELVAPSVLVKSLRDAKKKHLVEATAEEELGKIET
VGYRKQELVAPSVLVKSFKYANKRYKDKTQHKCGLLSTCTNIVPVLLRGRMNISIVGFLLAQQYKEPARGLIHKGLEDIT
HLYNFGNRKIKALDKQFNWLAADNLLRLSAEKLRYKFCC
>Mature_439_residues
MLNRYNRTANIDRLFWQEWQKHQDYLYHCCVKWMGGNSINAEDALSMAMLKAREKVQKCHKTIDNFKAWLAKLTYNLCMD
LLKQSARYHQKVEDLDLVLSRADGRTQRGDPFFAVAYGELEDFCRLAIDNLPKRLRETFALFFKEYSYKEIATELSISEP
NVRKRISQGRAILRERYEEYQKQKEIVIFEEHKVENSPAQELETEIIATEMPQEAVLSEEKSEPILVEATAEKELGKIET
VGYRKQELVAPSVLVKSLRDAKKKHLVEATAEEELGKIETVGYRKQELVAPSVLVKSLRDAKKKHLVEATAEEELGKIET
VGYRKQELVAPSVLVKSFKYANKRYKDKTQHKCGLLSTCTNIVPVLLRGRMNISIVGFLLAQQYKEPARGLIHKGLEDIT
HLYNFGNRKIKALDKQFNWLAADNLLRLSAEKLRYKFCC

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50857; Mature: 50857

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRYNRTANIDRLFWQEWQKHQDYLYHCCVKWMGGNSINAEDALSMAMLKAREKVQKCH
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
KTIDNFKAWLAKLTYNLCMDLLKQSARYHQKVEDLDLVLSRADGRTQRGDPFFAVAYGEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHH
EDFCRLAIDNLPKRLRETFALFFKEYSYKEIATELSISEPNVRKRISQGRAILRERYEEY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
QKQKEIVIFEEHKVENSPAQELETEIIATEMPQEAVLSEEKSEPILVEATAEKELGKIET
HHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEECCHHHCCCHHH
VGYRKQELVAPSVLVKSLRDAKKKHLVEATAEEELGKIETVGYRKQELVAPSVLVKSLRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHH
AKKKHLVEATAEEELGKIETVGYRKQELVAPSVLVKSFKYANKRYKDKTQHKCGLLSTCT
HHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIVPVLLRGRMNISIVGFLLAQQYKEPARGLIHKGLEDITHLYNFGNRKIKALDKQFNWL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AADNLLRLSAEKLRYKFCC
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLNRYNRTANIDRLFWQEWQKHQDYLYHCCVKWMGGNSINAEDALSMAMLKAREKVQKCH
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
KTIDNFKAWLAKLTYNLCMDLLKQSARYHQKVEDLDLVLSRADGRTQRGDPFFAVAYGEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHH
EDFCRLAIDNLPKRLRETFALFFKEYSYKEIATELSISEPNVRKRISQGRAILRERYEEY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
QKQKEIVIFEEHKVENSPAQELETEIIATEMPQEAVLSEEKSEPILVEATAEKELGKIET
HHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEECCHHHCCCHHH
VGYRKQELVAPSVLVKSLRDAKKKHLVEATAEEELGKIETVGYRKQELVAPSVLVKSLRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHH
AKKKHLVEATAEEELGKIETVGYRKQELVAPSVLVKSFKYANKRYKDKTQHKCGLLSTCT
HHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIVPVLLRGRMNISIVGFLLAQQYKEPARGLIHKGLEDITHLYNFGNRKIKALDKQFNWL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AADNLLRLSAEKLRYKFCC
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA