| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476140
Identifier: 113476140
GI number: 113476140
Start: 3889733
End: 3890632
Strand: Reverse
Name: 113476140
Synonym: Tery_2522
Alternate gene names: NA
Gene position: 3890632-3889733 (Counterclockwise)
Preceding gene: 113476143
Following gene: 113476139
Centisome position: 50.2
GC content: 33.33
Gene sequence:
>900_bases ATGAGTCAGGGAAGTCAAAAGAATAACTCTTTTTGTTTTTGTACTGTAGCCTTTGGAAAAAATTATATACATTTGTCTAA ACTACTGGCCGATGATTTACATAAATTTGCACTAGGTCGCAATTTTATTATCTTCACTGATAATCCATTGGAATTTAAGG ATAAATCTAACGTTCAAGCAATTAAGCACTGGTGCAGAGGAGTCCTTCCATATAATGAAAGAAGATTTGCTATTTATTAT AGTCTTTCGATTTTTAATTCTGTAATTTACTTGGATGCCGACGTGAGAATTTTTTCCCCTCTTACAGTTGAGTTAGATTT TTATCCAGGTTTAACTGCACGTAGCTGTGGAAGTATGGAGAAGCACTTAAAGACGCAGTTTGATAGACCATTATTTTCAG CTTCTAAGGCCAAGAAAAAAGCTGTAATAGATAAAATGGCGGAGCAGGTGGGTGTAGACCTTTATTCTCAACAAGTGAAA TTTATTAACGAATTTTTGTTTGTGGTTACAGCTTATGAAGGACGAGAACTTGATTTTTTGAAATTGTGGGGAGAACTTGC TATTTATGCTGGTATCTTAGGAATGCATAAACACCCTACTTATGCTATGGCTCTAGCAGCGTTCAAAACAGGTTTCCCTA TTTACTACAGTGAAATGAATGGTCTTGATTTCTTTGACGATAGAATAGAAAAAGTTAAAATCAGTAAAGGACAATCTGTA CCAGAGGCTAGGCAAAAATACTTTGCTCAACAATATAACATAGAAAAAAAATCTCAAACAATTCTAGAACGTCTCATAAA ACGGATTTTTAGTTGGTTATCTTTAAAATACAATTTCATCGGTGTTAGGCTTATATATTACCTTAATTCTTCTATACTTA AAGATTATCCTAGTAGTTAA
Upstream 100 bases:
>100_bases AATCTACTCAATTGGTTATCTGAATTGGTCACAAAATTTTCCTAATGAAGTTATTCTTATTTAGTATAAACTTACTTCAA ACAAAGGAGTAACTGAAAAG
Downstream 100 bases:
>100_bases ACAAGAGACTTTTGGCAATATGTCTGAGAACTTAAAAAGTAAGTTATAATTCAAAATTGACAAGATCCTTAATTACTTAC TTTTAATGAAAAATTTATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MSQGSQKNNSFCFCTVAFGKNYIHLSKLLADDLHKFALGRNFIIFTDNPLEFKDKSNVQAIKHWCRGVLPYNERRFAIYY SLSIFNSVIYLDADVRIFSPLTVELDFYPGLTARSCGSMEKHLKTQFDRPLFSASKAKKKAVIDKMAEQVGVDLYSQQVK FINEFLFVVTAYEGRELDFLKLWGELAIYAGILGMHKHPTYAMALAAFKTGFPIYYSEMNGLDFFDDRIEKVKISKGQSV PEARQKYFAQQYNIEKKSQTILERLIKRIFSWLSLKYNFIGVRLIYYLNSSILKDYPSS
Sequences:
>Translated_299_residues MSQGSQKNNSFCFCTVAFGKNYIHLSKLLADDLHKFALGRNFIIFTDNPLEFKDKSNVQAIKHWCRGVLPYNERRFAIYY SLSIFNSVIYLDADVRIFSPLTVELDFYPGLTARSCGSMEKHLKTQFDRPLFSASKAKKKAVIDKMAEQVGVDLYSQQVK FINEFLFVVTAYEGRELDFLKLWGELAIYAGILGMHKHPTYAMALAAFKTGFPIYYSEMNGLDFFDDRIEKVKISKGQSV PEARQKYFAQQYNIEKKSQTILERLIKRIFSWLSLKYNFIGVRLIYYLNSSILKDYPSS >Mature_298_residues SQGSQKNNSFCFCTVAFGKNYIHLSKLLADDLHKFALGRNFIIFTDNPLEFKDKSNVQAIKHWCRGVLPYNERRFAIYYS LSIFNSVIYLDADVRIFSPLTVELDFYPGLTARSCGSMEKHLKTQFDRPLFSASKAKKKAVIDKMAEQVGVDLYSQQVKF INEFLFVVTAYEGRELDFLKLWGELAIYAGILGMHKHPTYAMALAAFKTGFPIYYSEMNGLDFFDDRIEKVKISKGQSVP EARQKYFAQQYNIEKKSQTILERLIKRIFSWLSLKYNFIGVRLIYYLNSSILKDYPSS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34637; Mature: 34506
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQGSQKNNSFCFCTVAFGKNYIHLSKLLADDLHKFALGRNFIIFTDNPLEFKDKSNVQA CCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHH IKHWCRGVLPYNERRFAIYYSLSIFNSVIYLDADVRIFSPLTVELDFYPGLTARSCGSME HHHHHCCCCCCCCCEEEEEEEHHHHCEEEEEECCEEEECCEEEEEECCCCCCHHHCCHHH KHLKTQFDRPLFSASKAKKKAVIDKMAEQVGVDLYSQQVKFINEFLFVVTAYEGRELDFL HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEEEECCCCCCHHH KLWGELAIYAGILGMHKHPTYAMALAAFKTGFPIYYSEMNGLDFFDDRIEKVKISKGQSV HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHEECCCCCCC PEARQKYFAQQYNIEKKSQTILERLIKRIFSWLSLKYNFIGVRLIYYLNSSILKDYPSS HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SQGSQKNNSFCFCTVAFGKNYIHLSKLLADDLHKFALGRNFIIFTDNPLEFKDKSNVQA CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHH IKHWCRGVLPYNERRFAIYYSLSIFNSVIYLDADVRIFSPLTVELDFYPGLTARSCGSME HHHHHCCCCCCCCCEEEEEEEHHHHCEEEEEECCEEEECCEEEEEECCCCCCHHHCCHHH KHLKTQFDRPLFSASKAKKKAVIDKMAEQVGVDLYSQQVKFINEFLFVVTAYEGRELDFL HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEEEECCCCCCHHH KLWGELAIYAGILGMHKHPTYAMALAAFKTGFPIYYSEMNGLDFFDDRIEKVKISKGQSV HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHEECCCCCCC PEARQKYFAQQYNIEKKSQTILERLIKRIFSWLSLKYNFIGVRLIYYLNSSILKDYPSS HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA